BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012864
         (612 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]      133   3e-29
gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]      124   1e-26
ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arab...   119   3e-25
ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arab...   118   9e-25
ref|NP_565427.1| cold shock domain protein 3 [Arabidopsis thalia...   115   5e-24

>gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
          Length = 263

 Score =  133 bits (334), Expect = 3e-29
 Identities = 81/192 (42%), Positives = 94/192 (48%), Gaps = 43/192 (22%)
 Frame = +1

Query: 166 ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKK 345
           +TG V WFN  KGYGFITPD+ D E+LFVHQS+I S+G+R+L+ G+SVEF V    DG K
Sbjct: 11  STGKVNWFNDSKGYGFITPDD-DGEELFVHQSAILSEGFRSLTVGDSVEFAVTQGTDG-K 68

Query: 346 TQAVNVLRKGKXXXXXXXIIE------------------------------------CYT 417
           T+AVNV   G        I                                      CYT
Sbjct: 69  TKAVNVTAPGGAPLHRKEISSRGNGARRGGSCYHCGEVGHMAKDCSSSDRGDRSSGGCYT 128

Query: 418 CSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKST-------AGE 576
           C   GH ARDC QK+      G    GA   CYNC   GH ARDC+ KS        +G 
Sbjct: 129 CGDTGHFARDCVQKSSGNGGSGGERGGAGGECYNCGNTGHFARDCVQKSVGNVGDRGSGG 188

Query: 577 GGRCYNCDGKGH 612
           GG CYNC G GH
Sbjct: 189 GGVCYNCGGAGH 200



 Score = 68.6 bits (166), Expect = 9e-10
 Identities = 34/69 (49%), Positives = 37/69 (53%)
 Frame = +1

Query: 406 ECYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKSTAGEGGR 585
           ECY C   GH ARDC QK+   V D     G V  CYNC   GH+ARDC    T  + G 
Sbjct: 159 ECYNCGNTGHFARDCVQKSVGNVGDRGSGGGGV--CYNCGGAGHMARDC---PTKRQPGA 213

Query: 586 CYNCDGKGH 612
           CY C G GH
Sbjct: 214 CYECGGTGH 222


>gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]
          Length = 295

 Score =  124 bits (311), Expect = 1e-26
 Identities = 71/160 (44%), Positives = 89/160 (55%), Gaps = 11/160 (6%)
 Frame = +1

Query: 166 ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKK 345
           +TG V WF+  KGYGFITPD+   E LFVHQSSI SDG+R+L+ GESVE+ + L +DG K
Sbjct: 11  STGKVNWFSDGKGYGFITPDDGGDE-LFVHQSSIVSDGFRSLTVGESVEYAITLGSDG-K 68

Query: 346 TQAVNVLRKGKXXXXXXXIIE------CYTCSQVGHIARDCPQKNKILVTDGVVANGAVI 507
           T+AV V   G        I        C+ C ++GH+A+DC          G   +G   
Sbjct: 69  TKAVEVTAPGGGSLKNKEISSRGNGGGCFNCGEIGHMAKDCVGGKSF--GGGGRRSGGEG 126

Query: 508 RCYNCKRIGHVARDCLVKS-----TAGEGGRCYNCDGKGH 612
            CYNC  +GH ARDC   +       G GG CYNC   GH
Sbjct: 127 SCYNCGNVGHFARDCRQNAGGNSVGGGGGGACYNCGEVGH 166



 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 32/71 (45%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 409 CYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKSTAGEG--- 579
           CY C  VGH ARDC Q     V  G    G    CY C   GH+AR C  K  +G G   
Sbjct: 192 CYMCGDVGHFARDCRQNVGGDVGGG---GGGGNTCYTCGGFGHMARVCTSKRPSGGGGGV 248

Query: 580 GRCYNCDGKGH 612
           G CY C G GH
Sbjct: 249 GACYECGGIGH 259



 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +1

Query: 409 CYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKSTAGEGG-- 582
           CYTC   GH+AR C  K            G V  CY C  IGH+ARDC  + + G  G  
Sbjct: 223 CYTCGGFGHMARVCTSKRPS------GGGGGVGACYECGGIGHLARDCDRRGSGGGSGSS 276

Query: 583 RCYNCDGKGH 612
           +C+ C  +GH
Sbjct: 277 KCFTCGKEGH 286


>ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
           lyrata] gi|297312877|gb|EFH43300.1| hypothetical protein
           ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata]
          Length = 257

 Score =  119 bits (299), Expect = 3e-25
 Identities = 77/192 (40%), Positives = 90/192 (46%), Gaps = 43/192 (22%)
 Frame = +1

Query: 166 ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKK 345
           +TG V WFN  KGYGFITPD++ +E+LFVHQSSI S+GYR+L+EG+SVEF +   +DG K
Sbjct: 11  STGKVNWFNDSKGYGFITPDDR-SEELFVHQSSIVSEGYRSLAEGDSVEFAITQGSDG-K 68

Query: 346 TQAVNVLRKGKXXXXXXXIIE------------------------------------CYT 417
           T+AV V   G                                               CY 
Sbjct: 69  TKAVEVTALGGGALKKENNSRGNGARRGGGSGCYNCGELGHIGGGSGGGERGSRREGCYN 128

Query: 418 CSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDC-LVKSTAGE------ 576
           C   GH ARDC QK+         A      CYNC  IGH ARDC   K TAG       
Sbjct: 129 CGDAGHFARDCTQKSVGNGDQRGAAGAGKDGCYNCGDIGHFARDCGNQKVTAGSVRSGGG 188

Query: 577 GGRCYNCDGKGH 612
            G CY C G GH
Sbjct: 189 SGSCYTCGGVGH 200



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 28/68 (41%), Positives = 35/68 (51%)
 Frame = +1

Query: 409 CYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKSTAGEGGRC 588
           CY C  +GH ARDC   N+ +    V + G    CY C  +GH+AR+C  K     G  C
Sbjct: 160 CYNCGDIGHFARDCG--NQKVTAGSVRSGGGSGSCYTCGGVGHIARECATKRQPSRG--C 215

Query: 589 YNCDGKGH 612
           Y C G GH
Sbjct: 216 YQCGGSGH 223



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
 Frame = +1

Query: 409 CYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKSTAGEGG-- 582
           CYTC  VGHIAR+C  K +        + G    CY C   GH+ARDC  +++ G GG  
Sbjct: 192 CYTCGGVGHIARECATKRQ-------PSRG----CYQCGGSGHLARDCDQRASGGNGGGN 240

Query: 583 RCYNCDGKGH 612
           +CY+C  +GH
Sbjct: 241 KCYSCGKEGH 250


>ref|XP_002886133.1| hypothetical protein ARALYDRAFT_480687 [Arabidopsis lyrata subsp.
           lyrata] gi|297331973|gb|EFH62392.1| hypothetical protein
           ARALYDRAFT_480687 [Arabidopsis lyrata subsp. lyrata]
          Length = 299

 Score =  118 bits (295), Expect = 9e-25
 Identities = 71/160 (44%), Positives = 87/160 (54%), Gaps = 13/160 (8%)
 Frame = +1

Query: 172 GIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKKTQ 351
           G V WF   KGYGFITPD+   E+LFVHQSSI SDGYR+L+ GESVE+ + L +DG KT+
Sbjct: 11  GKVNWFGDGKGYGFITPDDGG-EELFVHQSSIVSDGYRSLTVGESVEYSITLGSDG-KTK 68

Query: 352 AVNVLRKG------KXXXXXXXIIECYTCSQVGHIARDCP--QKNKILVTDGVVANGAVI 507
           AVNV   G      K          C+ C +VGH+A+DC      +     G   +G   
Sbjct: 69  AVNVTAPGGGSLNKKENSSRGNGGSCFNCGEVGHMAKDCDGGGGGRSYGGGGGRRSGGEG 128

Query: 508 RCYNCKRIGHVARDCLV-----KSTAGEGGRCYNCDGKGH 612
            CY C  +GH ARDC           G GG CY+C   GH
Sbjct: 129 TCYVCGDVGHFARDCRQSGGGNSGGGGGGGPCYSCGEVGH 168



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 30/77 (38%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
 Frame = +1

Query: 409 CYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKSTAGEG--- 579
           CYTC  VGHIAR C  K          + GA   CY C   GH+ARDC  + +   G   
Sbjct: 225 CYTCGGVGHIARVCTSKRP--------SGGA---CYECGETGHLARDCDRRGSGSSGGGG 273

Query: 580 ------GRCYNCDGKGH 612
                 G+C+NC  +GH
Sbjct: 274 GGGGGSGKCFNCGKEGH 290



 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 28/74 (37%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +1

Query: 409 CYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCL------VKSTA 570
           CY+C +VGH+A+DC   +      G         CY C  +GH ARDC       V    
Sbjct: 160 CYSCGEVGHLAKDCRGGSGGNRYGGGGRGSGSDGCYLCGGVGHFARDCRQNGGGNVGGGG 219

Query: 571 GEGGRCYNCDGKGH 612
           G G  CY C G GH
Sbjct: 220 GGGNTCYTCGGVGH 233


>ref|NP_565427.1| cold shock domain protein 3 [Arabidopsis thaliana]
           gi|75165198|sp|Q94C69.1|CSP3_ARATH RecName: Full=Cold
           shock domain-containing protein 3; Short=AtCSP3
           gi|14334920|gb|AAK59638.1| putative glycine-rich,
           zinc-finger DNA-binding protein [Arabidopsis thaliana]
           gi|17104541|gb|AAL34159.1| putative glycine-rich,
           zinc-finger DNA-binding protein [Arabidopsis thaliana]
           gi|148726892|dbj|BAF63841.1| cold shock domain protein 3
           [Arabidopsis thaliana] gi|330251603|gb|AEC06697.1| cold
           shock domain protein 3 [Arabidopsis thaliana]
          Length = 301

 Score =  115 bits (289), Expect = 5e-24
 Identities = 68/161 (42%), Positives = 87/161 (54%), Gaps = 14/161 (8%)
 Frame = +1

Query: 172 GIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKKTQ 351
           G V WF+  KGYGFITPD+   E+LFVHQSSI SDG+R+L+ GESVE+++ L +DG KT+
Sbjct: 13  GKVSWFSDGKGYGFITPDDGG-EELFVHQSSIVSDGFRSLTLGESVEYEIALGSDG-KTK 70

Query: 352 AVNVLRKG------KXXXXXXXIIECYTCSQVGHIARDCP--QKNKILVTDGVVANGAVI 507
           A+ V   G      K          C+ C +VGH+A+DC      K     G   +G   
Sbjct: 71  AIEVTAPGGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEG 130

Query: 508 RCYNCKRIGHVARDCLVKSTAGEGG------RCYNCDGKGH 612
            CY C  +GH ARDC        GG       CY+C   GH
Sbjct: 131 ECYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGH 171



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 30/71 (42%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 409 CYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKSTAGEGG-- 582
           CY C  VGH ARDC Q        G    G    CY C  +GH+A+ C  K  +G GG  
Sbjct: 198 CYMCGGVGHFARDCRQNG------GGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGG 251

Query: 583 -RCYNCDGKGH 612
             CY C G GH
Sbjct: 252 RACYECGGTGH 262