BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012836
         (885 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI24303.3| unnamed protein product [Vitis vinifera]              322   7e-86
ref|XP_002266622.1| PREDICTED: THO complex subunit 7 homolog iso...   322   7e-86
ref|XP_003543006.1| PREDICTED: THO complex subunit 7 homolog [Gl...   311   1e-82
ref|XP_003593729.1| THO complex subunit-like protein [Medicago t...   310   3e-82
gb|ABK96424.1| unknown [Populus trichocarpa x Populus deltoides]      310   3e-82

>emb|CBI24303.3| unnamed protein product [Vitis vinifera]
          Length = 267

 Score =  322 bits (825), Expect = 7e-86
 Identities = 166/242 (68%), Positives = 193/242 (79%)
 Frame = +1

Query: 10  MLTKGRKVSGRGEQVVPSYAFGPLEDDTIIKHXXXXXXXXXXGEPPLKKLQKKFISFALE 189
           ML KGRKVSGRGE +   YAFGP EDDTIIKH          GEPPLKKLQKKF SF LE
Sbjct: 28  MLVKGRKVSGRGEAMAAHYAFGP-EDDTIIKHRLLTRTTTTRGEPPLKKLQKKFTSFTLE 86

Query: 190 VDKDADNYNVCDKLYKNLLQEMNTFELPLLKSKAVIDANVREKDNFNELQDGLRRQILQA 369
           ++KD DN++ C++L K  LQEM TFE+PLLKSKAVIDAN+REK+NFNEL+D + R ILQA
Sbjct: 87  IEKDTDNFSDCERLSKAFLQEMTTFEIPLLKSKAVIDANLREKENFNELKDDINRMILQA 146

Query: 370 EGDIEELKQQLEESKIERKHKEECEKIRRLVNLQPPRAETQKVITELEKEIGMLEAENTA 549
           + DIE+LK+QLEESKIER+HKEECE IRRL+ +QPPR+ET+K+I+ELE EI  LEAENTA
Sbjct: 147 QADIEDLKKQLEESKIERQHKEECEAIRRLIAMQPPRSETEKIISELENEIAALEAENTA 206

Query: 550 GSRTLELRKKQFSLLLHVVDELQNTIEDEQKSXXXXXXXXXXXXKTGLEDGVSGGSEAMV 729
           GSRTLELRKKQF+LLLHVVDELQNTIE+EQK+            K G+EDG +G SEAM 
Sbjct: 207 GSRTLELRKKQFALLLHVVDELQNTIEEEQKNLIEEIRSLTEEHKNGMEDG-NGVSEAMA 265

Query: 730 VD 735
           VD
Sbjct: 266 VD 267


>ref|XP_002266622.1| PREDICTED: THO complex subunit 7 homolog isoform 1 [Vitis vinifera]
           gi|359479144|ref|XP_003632225.1| PREDICTED: THO complex
           subunit 7 homolog isoform 2 [Vitis vinifera]
           gi|359479146|ref|XP_003632226.1| PREDICTED: THO complex
           subunit 7 homolog isoform 3 [Vitis vinifera]
          Length = 240

 Score =  322 bits (825), Expect = 7e-86
 Identities = 166/242 (68%), Positives = 193/242 (79%)
 Frame = +1

Query: 10  MLTKGRKVSGRGEQVVPSYAFGPLEDDTIIKHXXXXXXXXXXGEPPLKKLQKKFISFALE 189
           ML KGRKVSGRGE +   YAFGP EDDTIIKH          GEPPLKKLQKKF SF LE
Sbjct: 1   MLVKGRKVSGRGEAMAAHYAFGP-EDDTIIKHRLLTRTTTTRGEPPLKKLQKKFTSFTLE 59

Query: 190 VDKDADNYNVCDKLYKNLLQEMNTFELPLLKSKAVIDANVREKDNFNELQDGLRRQILQA 369
           ++KD DN++ C++L K  LQEM TFE+PLLKSKAVIDAN+REK+NFNEL+D + R ILQA
Sbjct: 60  IEKDTDNFSDCERLSKAFLQEMTTFEIPLLKSKAVIDANLREKENFNELKDDINRMILQA 119

Query: 370 EGDIEELKQQLEESKIERKHKEECEKIRRLVNLQPPRAETQKVITELEKEIGMLEAENTA 549
           + DIE+LK+QLEESKIER+HKEECE IRRL+ +QPPR+ET+K+I+ELE EI  LEAENTA
Sbjct: 120 QADIEDLKKQLEESKIERQHKEECEAIRRLIAMQPPRSETEKIISELENEIAALEAENTA 179

Query: 550 GSRTLELRKKQFSLLLHVVDELQNTIEDEQKSXXXXXXXXXXXXKTGLEDGVSGGSEAMV 729
           GSRTLELRKKQF+LLLHVVDELQNTIE+EQK+            K G+EDG +G SEAM 
Sbjct: 180 GSRTLELRKKQFALLLHVVDELQNTIEEEQKNLIEEIRSLTEEHKNGMEDG-NGVSEAMA 238

Query: 730 VD 735
           VD
Sbjct: 239 VD 240


>ref|XP_003543006.1| PREDICTED: THO complex subunit 7 homolog [Glycine max]
          Length = 242

 Score =  311 bits (798), Expect = 1e-82
 Identities = 159/243 (65%), Positives = 189/243 (77%), Gaps = 1/243 (0%)
 Frame = +1

Query: 10  MLTKGRKVSGRGEQVVPSYAFGPLEDDTIIKHXXXXXXXXXXGEPPLKKLQKKFISFALE 189
           ML K RKVS RGE V  +YAFGP EDD IIKH          G+PPLKKLQKKF SF  E
Sbjct: 1   MLGKTRKVSARGESVAANYAFGPSEDDVIIKHRLLTRTTTTRGDPPLKKLQKKFTSFVSE 60

Query: 190 VDKDADN-YNVCDKLYKNLLQEMNTFELPLLKSKAVIDANVREKDNFNELQDGLRRQILQ 366
           VDKD DN YN CDKL +  LQE+ TFE+PLLKSKA+++AN+REK+NFNEL++ + RQILQ
Sbjct: 61  VDKDEDNNYNECDKLARAFLQELTTFEIPLLKSKAIVEANIREKENFNELKEEMNRQILQ 120

Query: 367 AEGDIEELKQQLEESKIERKHKEECEKIRRLVNLQPPRAETQKVITELEKEIGMLEAENT 546
           A+ DIE+LK+QLEESK+ER+HKEECE IR+L+ +QPPR+ET KVI+ELE EI  L+AENT
Sbjct: 121 AQDDIEDLKKQLEESKVERRHKEECEAIRKLIAMQPPRSETMKVISELENEIAALDAENT 180

Query: 547 AGSRTLELRKKQFSLLLHVVDELQNTIEDEQKSXXXXXXXXXXXXKTGLEDGVSGGSEAM 726
           AGSR LELRKKQF+LLLHVVDELQNTIE+EQKS            K G+ED  +GG+EAM
Sbjct: 181 AGSRLLELRKKQFALLLHVVDELQNTIEEEQKSLVEEMRMATEELKNGMED-TNGGAEAM 239

Query: 727 VVD 735
            +D
Sbjct: 240 AID 242


>ref|XP_003593729.1| THO complex subunit-like protein [Medicago truncatula]
           gi|355482777|gb|AES63980.1| THO complex subunit-like
           protein [Medicago truncatula]
           gi|388493192|gb|AFK34662.1| unknown [Medicago
           truncatula]
          Length = 242

 Score =  310 bits (794), Expect = 3e-82
 Identities = 159/237 (67%), Positives = 185/237 (78%)
 Frame = +1

Query: 25  RKVSGRGEQVVPSYAFGPLEDDTIIKHXXXXXXXXXXGEPPLKKLQKKFISFALEVDKDA 204
           RKVS RGE V  +YAFGP  DD IIKH          GEPPLKKLQKKF SF  EVDKD 
Sbjct: 6   RKVSARGEPVAANYAFGPSIDDVIIKHRLLTRTTTTRGEPPLKKLQKKFTSFVSEVDKDE 65

Query: 205 DNYNVCDKLYKNLLQEMNTFELPLLKSKAVIDANVREKDNFNELQDGLRRQILQAEGDIE 384
           DNYN C+KL +  LQE+ TFE+PLLKSKA+++ANVREKDNFNEL+D + RQI QA+ DIE
Sbjct: 66  DNYNDCEKLARAFLQELTTFEIPLLKSKAIVEANVREKDNFNELKDEMNRQIAQAQVDIE 125

Query: 385 ELKQQLEESKIERKHKEECEKIRRLVNLQPPRAETQKVITELEKEIGMLEAENTAGSRTL 564
           +LK+QLEESK+ER+HKEECE IR+L+ +QPPR+ETQKV++ELEKEI  L+AENTAGSR L
Sbjct: 126 DLKKQLEESKVERRHKEECEAIRKLIAVQPPRSETQKVLSELEKEIAALDAENTAGSRLL 185

Query: 565 ELRKKQFSLLLHVVDELQNTIEDEQKSXXXXXXXXXXXXKTGLEDGVSGGSEAMVVD 735
           ELRKKQFSLLL VVDELQNTIE++QKS            K G+ED  SGGS+AM VD
Sbjct: 186 ELRKKQFSLLLQVVDELQNTIEEDQKSLVEEMRLATEELKNGMED-ASGGSDAMAVD 241


>gb|ABK96424.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 240

 Score =  310 bits (794), Expect = 3e-82
 Identities = 160/241 (66%), Positives = 186/241 (77%)
 Frame = +1

Query: 13  LTKGRKVSGRGEQVVPSYAFGPLEDDTIIKHXXXXXXXXXXGEPPLKKLQKKFISFALEV 192
           + KGRK+SGRGE V  +YAFGPLEDD IIKH          GEPPLKKLQKKF S+  E+
Sbjct: 1   MLKGRKISGRGETVAANYAFGPLEDDVIIKHRLLTRTTTTRGEPPLKKLQKKFASYVSEI 60

Query: 193 DKDADNYNVCDKLYKNLLQEMNTFELPLLKSKAVIDANVREKDNFNELQDGLRRQILQAE 372
           +KD DNYN C KL K  LQE++TFE+PLLKSKAVID+NVREK+NFNEL+D + RQILQA+
Sbjct: 61  EKDEDNYNDCVKLSKAFLQELSTFEIPLLKSKAVIDSNVREKENFNELKDDINRQILQAQ 120

Query: 373 GDIEELKQQLEESKIERKHKEECEKIRRLVNLQPPRAETQKVITELEKEIGMLEAENTAG 552
            DIE+LK+QLEESKIER+HKEECE IR+L+  QPPR+  QKVIT+LEKEI  LEAENTA 
Sbjct: 121 ADIEDLKKQLEESKIERQHKEECEAIRKLIATQPPRSLMQKVITDLEKEIAALEAENTAS 180

Query: 553 SRTLELRKKQFSLLLHVVDELQNTIEDEQKSXXXXXXXXXXXXKTGLEDGVSGGSEAMVV 732
           SR LELRKKQF LLLHVVDELQNTIE+++K+            K G+ED   G SEAM V
Sbjct: 181 SRLLELRKKQFVLLLHVVDELQNTIEEDEKNLIEEMRVATEEQKNGMED-AGGVSEAMAV 239

Query: 733 D 735
           D
Sbjct: 240 D 240