BLASTX nr result
ID: Coptis24_contig00012815
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00012815
(1619 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002509556.1| 26S proteasome regulatory subunit S3, putati... 539 e-151
ref|XP_002263731.1| PREDICTED: COP9 signalosome complex subunit ... 536 e-150
ref|XP_003524625.1| PREDICTED: COP9 signalosome complex subunit ... 522 e-146
ref|XP_003524624.1| PREDICTED: COP9 signalosome complex subunit ... 521 e-145
ref|XP_002300091.1| predicted protein [Populus trichocarpa] gi|2... 517 e-144
>ref|XP_002509556.1| 26S proteasome regulatory subunit S3, putative [Ricinus communis]
gi|223549455|gb|EEF50943.1| 26S proteasome regulatory
subunit S3, putative [Ricinus communis]
Length = 427
Score = 539 bits (1389), Expect = e-151
Identities = 281/422 (66%), Positives = 329/422 (77%), Gaps = 3/422 (0%)
Frame = +2
Query: 62 SVEKLVNEIQGLSNPRDDLKHLPSLLKKQEGXXXXXXXXXXXXXXDQLDPFLHSLGYLYV 241
S+E LV +IQGLS+ D+ L + LK+ + DQLDP +HSLGYLY
Sbjct: 5 SIESLVTQIQGLSSSATDISALHNYLKQADDSLHSDSPTRLLPFLDQLDPSVHSLGYLYF 64
Query: 242 LKAYTSAVSISKQQASGLVSTIARFIDSCEGEQIRLVPDKFISVCRRLKDELLLLKMPMR 421
L+A TS ISK+QA LV +ARF+ SC +QIRL PDKFISVC+R KD+++LL+ PMR
Sbjct: 65 LEACTSG-PISKEQARTLVLILARFVTSCAADQIRLAPDKFISVCKRFKDQVMLLEEPMR 123
Query: 422 GVAPLRTAIYKLQPSFGKLTTLHPDFLLLCLSAKCYKTGYSILDEDIFETDQPRDLFLYC 601
GVAPL A+ KLQ S LTTLHP+FL LCL +KCYKTG SIL++DIFE DQPRDLFLY
Sbjct: 124 GVAPLLAAVRKLQSSSVHLTTLHPEFLQLCLLSKCYKTGLSILEDDIFEVDQPRDLFLYS 183
Query: 602 YYGGMICIGQKCFRKAHELLHNVVTAPTSALNAISVEALKKYILVSLIQNGQFLKNLP-- 775
YYGGM+CIGQK FRKA ELLHNVVTAP S++NAI+VEA KKYIL SLI GQF +LP
Sbjct: 184 YYGGMVCIGQKRFRKALELLHNVVTAPMSSINAIAVEAYKKYILASLIHQGQFSTSLPKY 243
Query: 776 TSVVASRTRKVLCQHYYDLGEIYSNGKISELESFVETHREEFERENNLGLVKQVISSVYK 955
S A R K CQ Y +L YS GKI+ELE++V+T+RE+FE +NNLGLVKQV+SS+YK
Sbjct: 244 ASSAAQRNLKNFCQPYIELANSYSTGKIAELETYVQTNREKFESDNNLGLVKQVVSSMYK 303
Query: 956 RNIQRLTQTYLTLSLQDIANRVQLNTPKEAEMHVLQMIQDGEIFATINQKDGMVSFHEDH 1135
RNIQRLTQTYLTLSLQDIAN VQLN+PKEAEMHVLQMIQDGEI+ATINQKDGMV F ED
Sbjct: 304 RNIQRLTQTYLTLSLQDIANTVQLNSPKEAEMHVLQMIQDGEIYATINQKDGMVRFLEDP 363
Query: 1136 EQYKTCEMIEHIDSSIQRVVALSKKLNAVNEIMSWDAAYLAKAGNDHQRFDFDDLD-LPH 1312
EQYKTCEMIEHIDSSIQR++ LSKKL A++E+MS D YLAKAG + QRFDFDD D +P
Sbjct: 364 EQYKTCEMIEHIDSSIQRIMNLSKKLTAMDELMSCDPLYLAKAGRERQRFDFDDFDTVPQ 423
Query: 1313 RF 1318
+F
Sbjct: 424 KF 425
>ref|XP_002263731.1| PREDICTED: COP9 signalosome complex subunit 3 [Vitis vinifera]
gi|296090247|emb|CBI40066.3| unnamed protein product
[Vitis vinifera]
Length = 424
Score = 536 bits (1380), Expect = e-150
Identities = 282/424 (66%), Positives = 328/424 (77%), Gaps = 3/424 (0%)
Frame = +2
Query: 56 MESVEKLVNEIQGLSNPRDDLKHLPSLLKKQEGXXXXXXXXXXXXXXDQLDPFLHSLGYL 235
M+SVE +V +IQGLS D+ L SLLK Q +QLDP +H+LGYL
Sbjct: 1 MDSVEAVVTQIQGLSGGSGDISLLHSLLK-QADDLLHNESTRLAPFLEQLDPSIHTLGYL 59
Query: 236 YVLKAYTSAVSISKQQASGLVSTIARFIDSCEGEQIRLVPDKFISVCRRLKDELLLLKMP 415
Y+L+A TS I K+QA+ LV +IA FI++C EQI L PDKF+S+C+RLKD+++LL+ P
Sbjct: 60 YLLEACTST-PIPKEQANQLVLSIANFINNCSAEQIHLAPDKFVSLCKRLKDQVILLEAP 118
Query: 416 MRGVAPLRTAIYKLQPSFGKLTTLHPDFLLLCLSAKCYKTGYSILDEDIFETDQPRDLFL 595
MRGVAP+ TA+ KLQ + LT LHPDFLLLCL AKCYKTG IL++DIFE DQPRD FL
Sbjct: 119 MRGVAPMLTAVRKLQSASELLTVLHPDFLLLCLLAKCYKTGLCILEDDIFEVDQPRDFFL 178
Query: 596 YCYYGGMICIGQKCFRKAHELLHNVVTAPTSALNAISVEALKKYILVSLIQNGQFLKNLP 775
YCYYGGMICIGQK FRKA ELLHNVVTAP S +NAI+VEA KKYILVSLI NGQF P
Sbjct: 179 YCYYGGMICIGQKRFRKALELLHNVVTAPMSTINAIAVEAYKKYILVSLIHNGQFSTTFP 238
Query: 776 --TSVVASRTRKVLCQHYYDLGEIYSNGKISELESFVETHREEFERENNLGLVKQVISSV 949
TS VA R K Q Y DL YS+GKISE E ++T+RE+FE + NLGLVKQV+SS+
Sbjct: 239 KYTSSVAQRNLKNFSQPYLDLANSYSSGKISEPEKCIQTNREKFEADKNLGLVKQVVSSM 298
Query: 950 YKRNIQRLTQTYLTLSLQDIANRVQLNTPKEAEMHVLQMIQDGEIFATINQKDGMVSFHE 1129
YKRNIQRLTQTYLTLSLQDIAN VQLN+PKEAEMHVLQMIQDGEIFATINQKDGMV F E
Sbjct: 299 YKRNIQRLTQTYLTLSLQDIANTVQLNSPKEAEMHVLQMIQDGEIFATINQKDGMVRFQE 358
Query: 1130 DHEQYKTCEMIEHIDSSIQRVVALSKKLNAVNEIMSWDAAYLAKAGNDHQRFDFDDLD-L 1306
D EQYKTCEMIEHIDSSIQR++ LSKKL ++E++S D YLAKAG + QRFDFDD D +
Sbjct: 359 DPEQYKTCEMIEHIDSSIQRIMTLSKKLTTMDELISCDPLYLAKAGRERQRFDFDDYDTV 418
Query: 1307 PHRF 1318
P +F
Sbjct: 419 PQKF 422
>ref|XP_003524625.1| PREDICTED: COP9 signalosome complex subunit 3-like isoform 2 [Glycine
max]
Length = 423
Score = 522 bits (1345), Expect = e-146
Identities = 271/423 (64%), Positives = 327/423 (77%), Gaps = 2/423 (0%)
Frame = +2
Query: 56 MESVEKLVNEIQGLSNPRDDLKHLPSLLKKQEGXXXXXXXXXXXXXXDQLDPFLHSLGYL 235
M+ +E LV +IQGLS+ DL L ++LK Q QLDP +HSLG+L
Sbjct: 1 MDPLEALVAQIQGLSSSPGDLTRLHTVLK-QADDSLRSESTRLAPILTQLDPSIHSLGFL 59
Query: 236 YVLKAYTSAVSISKQQASGLVSTIARFIDSCEGEQIRLVPDKFISVCRRLKDELLLLKMP 415
Y+L+A + ++K QA +V + RFI +C EQIRL PDKF+SVCRRLKD+++LL+ P
Sbjct: 60 YILEASMTG-PVTKTQAEVVVPIVTRFIGACSTEQIRLAPDKFLSVCRRLKDQVMLLEAP 118
Query: 416 MRGVAPLRTAIYKLQPSFGKLTTLHPDFLLLCLSAKCYKTGYSILDEDIFETDQPRDLFL 595
+RGVAPL A+ KLQ S LT LH +FLLLCL AKCYKTG SILD+D+FE DQPRDLFL
Sbjct: 119 IRGVAPLFNALRKLQASAEHLTPLHSEFLLLCLLAKCYKTGLSILDDDVFEVDQPRDLFL 178
Query: 596 YCYYGGMICIGQKCFRKAHELLHNVVTAPTSALNAISVEALKKYILVSLIQNGQFLKNLP 775
YCYYGGMICIGQK F+KA +LLHNVVTAP S +NAI+VEA KKYILVSLI++GQF +LP
Sbjct: 179 YCYYGGMICIGQKRFQKALDLLHNVVTAPMSTINAIAVEAYKKYILVSLIRHGQFSTSLP 238
Query: 776 --TSVVASRTRKVLCQHYYDLGEIYSNGKISELESFVETHREEFERENNLGLVKQVISSV 949
+S A R K CQ Y +L Y GKI+ELE++V+ + E+FE +NNLGLVKQV+SS+
Sbjct: 239 KYSSSTAQRNLKNFCQPYVELANSYGTGKIAELEAYVKANAEKFESDNNLGLVKQVVSSM 298
Query: 950 YKRNIQRLTQTYLTLSLQDIANRVQLNTPKEAEMHVLQMIQDGEIFATINQKDGMVSFHE 1129
YKRNIQRLTQTYLTLSLQDIAN VQLN+PKEAEMHVLQMIQDGEI+ATINQKDGMV F E
Sbjct: 299 YKRNIQRLTQTYLTLSLQDIANTVQLNSPKEAEMHVLQMIQDGEIYATINQKDGMVRFLE 358
Query: 1130 DHEQYKTCEMIEHIDSSIQRVVALSKKLNAVNEIMSWDAAYLAKAGNDHQRFDFDDLDLP 1309
D EQYKTCEMIEHIDSSIQR++ALS+KL A +E +S D YL+KAG + QR+DFDD D+P
Sbjct: 359 DPEQYKTCEMIEHIDSSIQRIMALSRKLTATDEQISCDQLYLSKAGRERQRYDFDDFDVP 418
Query: 1310 HRF 1318
+F
Sbjct: 419 QKF 421
>ref|XP_003524624.1| PREDICTED: COP9 signalosome complex subunit 3-like isoform 1 [Glycine
max]
Length = 423
Score = 521 bits (1342), Expect = e-145
Identities = 270/423 (63%), Positives = 327/423 (77%), Gaps = 2/423 (0%)
Frame = +2
Query: 56 MESVEKLVNEIQGLSNPRDDLKHLPSLLKKQEGXXXXXXXXXXXXXXDQLDPFLHSLGYL 235
M+ +E LV +IQGLS+ DL L ++LK Q QLDP +HSLG+L
Sbjct: 1 MDPLEALVAQIQGLSSSPGDLTRLHTVLK-QADDSLRSESTRLAPILTQLDPSIHSLGFL 59
Query: 236 YVLKAYTSAVSISKQQASGLVSTIARFIDSCEGEQIRLVPDKFISVCRRLKDELLLLKMP 415
Y+L+A + ++K QA +V + RFI +C EQIRL PDKF+SVC+RLKD+++LL+ P
Sbjct: 60 YILEASMTG-PVTKTQAEVVVPIVTRFIGACSTEQIRLAPDKFLSVCKRLKDQVMLLEAP 118
Query: 416 MRGVAPLRTAIYKLQPSFGKLTTLHPDFLLLCLSAKCYKTGYSILDEDIFETDQPRDLFL 595
+RGVAPL A+ KLQ S LT LH +FLLLCL AKCYKTG SILD+D+FE DQPRDLFL
Sbjct: 119 IRGVAPLFNALRKLQASAEHLTPLHSEFLLLCLLAKCYKTGLSILDDDVFEVDQPRDLFL 178
Query: 596 YCYYGGMICIGQKCFRKAHELLHNVVTAPTSALNAISVEALKKYILVSLIQNGQFLKNLP 775
YCYYGGMICIGQK F+KA +LLHNVVTAP S +NAI+VEA KKYILVSLI++GQF +LP
Sbjct: 179 YCYYGGMICIGQKRFQKALDLLHNVVTAPMSTINAIAVEAYKKYILVSLIRHGQFSTSLP 238
Query: 776 --TSVVASRTRKVLCQHYYDLGEIYSNGKISELESFVETHREEFERENNLGLVKQVISSV 949
+S A R K CQ Y +L Y GKI+ELE++V+ + E+FE +NNLGLVKQV+SS+
Sbjct: 239 KYSSSTAQRNLKNFCQPYVELANSYGTGKIAELEAYVKANAEKFESDNNLGLVKQVVSSM 298
Query: 950 YKRNIQRLTQTYLTLSLQDIANRVQLNTPKEAEMHVLQMIQDGEIFATINQKDGMVSFHE 1129
YKRNIQRLTQTYLTLSLQDIAN VQLN+PKEAEMHVLQMIQDGEI+ATINQKDGMV F E
Sbjct: 299 YKRNIQRLTQTYLTLSLQDIANTVQLNSPKEAEMHVLQMIQDGEIYATINQKDGMVRFLE 358
Query: 1130 DHEQYKTCEMIEHIDSSIQRVVALSKKLNAVNEIMSWDAAYLAKAGNDHQRFDFDDLDLP 1309
D EQYKTCEMIEHIDSSIQR++ALS+KL A +E +S D YL+KAG + QR+DFDD D+P
Sbjct: 359 DPEQYKTCEMIEHIDSSIQRIMALSRKLTATDEQISCDQLYLSKAGRERQRYDFDDFDVP 418
Query: 1310 HRF 1318
+F
Sbjct: 419 QKF 421
>ref|XP_002300091.1| predicted protein [Populus trichocarpa] gi|222847349|gb|EEE84896.1|
predicted protein [Populus trichocarpa]
Length = 423
Score = 517 bits (1331), Expect = e-144
Identities = 271/424 (63%), Positives = 328/424 (77%), Gaps = 3/424 (0%)
Frame = +2
Query: 56 MESVEKLVNEIQGLSNPRDDLKHLPSLLKKQEGXXXXXXXXXXXXXXDQLDPFLHSLGYL 235
M +VE LV +IQGLS+ DL L + LK Q +QLDP LHSLGYL
Sbjct: 1 MATVESLVAQIQGLSSSAGDLSLLLTHLK-QADEFLHNESTRLLPFLEQLDPTLHSLGYL 59
Query: 236 YVLKAYTSAVSISKQQASGLVSTIARFIDSCEGEQIRLVPDKFISVCRRLKDELLLLKMP 415
Y+L+A TS ++ QA LV ++RF+ SC +QIRL P+KFI+VC+ KD++L+L+ P
Sbjct: 60 YILEACTSW-PVTNDQARRLVLILSRFLTSCVADQIRLAPEKFIAVCKSFKDQVLMLEAP 118
Query: 416 MRGVAPLRTAIYKLQPSFGKLTTLHPDFLLLCLSAKCYKTGYSILDEDIFETDQPRDLFL 595
+RGV PL A+ KL+ S LTTLHPDFL LCL AKCYKTG SIL++DIFE DQPRD +L
Sbjct: 119 IRGVVPLLEAVKKLRSS-EHLTTLHPDFLQLCLLAKCYKTGLSILEDDIFEVDQPRDFYL 177
Query: 596 YCYYGGMICIGQKCFRKAHELLHNVVTAPTSALNAISVEALKKYILVSLIQNGQFLKNLP 775
YCYYGGMICIGQK F+KA ELLHNVVTAP S++NAI+VEA KKY+LVSLI NGQF +LP
Sbjct: 178 YCYYGGMICIGQKRFQKALELLHNVVTAPMSSINAIAVEAFKKYVLVSLIYNGQFSTSLP 237
Query: 776 --TSVVASRTRKVLCQHYYDLGEIYSNGKISELESFVETHREEFERENNLGLVKQVISSV 949
TS A R K +CQ Y +L YS GKISELE +++T+RE+F+ +NNLGLVKQV++S+
Sbjct: 238 KYTSSAAQRNLKTICQPYIELANTYSIGKISELEPYIQTNREKFDSDNNLGLVKQVVTSM 297
Query: 950 YKRNIQRLTQTYLTLSLQDIANRVQLNTPKEAEMHVLQMIQDGEIFATINQKDGMVSFHE 1129
YKRNIQRLTQTYLTLSLQDIAN VQL++PKEAEMHVLQMIQDGEI+ATINQ+DGMV F E
Sbjct: 298 YKRNIQRLTQTYLTLSLQDIANTVQLSSPKEAEMHVLQMIQDGEIYATINQRDGMVRFLE 357
Query: 1130 DHEQYKTCEMIEHIDSSIQRVVALSKKLNAVNEIMSWDAAYLAKAGNDHQRFDFDDLD-L 1306
D EQYKTCEMIEHIDSSIQR++ LSKKL A++E++S D YLAK G + QRFDFDD D +
Sbjct: 358 DPEQYKTCEMIEHIDSSIQRIMTLSKKLTAMDELISCDPLYLAKVGRERQRFDFDDFDPV 417
Query: 1307 PHRF 1318
P +F
Sbjct: 418 PQKF 421