BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012741
         (515 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD21778.1| putative non-LTR retroelement reverse transcripta...   183   1e-44
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   181   4e-44
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   181   4e-44
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   180   9e-44
ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...   177   1e-42

>gb|AAD21778.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1715

 Score =  183 bits (465), Expect = 1e-44
 Identities = 88/160 (55%), Positives = 119/160 (74%), Gaps = 1/160 (0%)
 Frame = -3

Query: 513  ISPSQSAFVKGRQIFDNIVLAHEIVRTLK-RKKGASGCMAIKLDLSKAFDKVEWSFLLET 337
            IS SQ+AFV G+ I DN+++AHE++ +LK R++  SG +A+K D+SKA+D+VEW+FL + 
Sbjct: 895  ISDSQAAFVPGQNISDNVLVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKV 954

Query: 336  MEALGFSEKWRNWINQCISTTSLSFKINGSPMGFLKPERGIRQGDPLSPFLFIICMEVFS 157
            M  LGF+ +W  WI  C+++ S    INGSP G + P RGIRQGDPLSP+LF+ C EV S
Sbjct: 955  MIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLS 1014

Query: 156  RLLSKAEKEKQIHGVKISRSDNPMSHLLFADDSFIFCRAN 37
             +L KAE  KQIHG+KI++    +SHLLFADDS  FCRA+
Sbjct: 1015 NMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRAS 1054


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  181 bits (460), Expect = 4e-44
 Identities = 90/172 (52%), Positives = 120/172 (69%), Gaps = 1/172 (0%)
 Frame = -3

Query: 513  ISPSQSAFVKGRQIFDNIVLAHEIVRTLKRKK-GASGCMAIKLDLSKAFDKVEWSFLLET 337
            ISP+QSAFV GR I DNI++A+E+   ++ K+ G  G  A KLD+SKA+D+VEWSFL + 
Sbjct: 734  ISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDM 793

Query: 336  MEALGFSEKWRNWINQCISTTSLSFKINGSPMGFLKPERGIRQGDPLSPFLFIICMEVFS 157
            M  LGF   W N I +C+ST +   ++NG       PERG+RQGDPLSP+LF++C E FS
Sbjct: 794  MLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFS 853

Query: 156  RLLSKAEKEKQIHGVKISRSDNPMSHLLFADDSFIFCRANIAETHHLKDILE 1
             LLSK E+E ++HG++I +    +SHLLFADDS I CRAN  E   L+ IL+
Sbjct: 854  ALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQ 905


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  181 bits (460), Expect = 4e-44
 Identities = 90/172 (52%), Positives = 120/172 (69%), Gaps = 1/172 (0%)
 Frame = -3

Query: 513  ISPSQSAFVKGRQIFDNIVLAHEIVRTLKRKK-GASGCMAIKLDLSKAFDKVEWSFLLET 337
            ISP+QSAFV GR I DNI++A+E+   ++ K+ G  G  A KLD+SKA+D+VEWSFL + 
Sbjct: 730  ISPAQSAFVPGRLISDNILIAYEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDM 789

Query: 336  MEALGFSEKWRNWINQCISTTSLSFKINGSPMGFLKPERGIRQGDPLSPFLFIICMEVFS 157
            M  LGF   W N I +C+ST +   ++NG       PERG+RQGDPLSP+LF++C E FS
Sbjct: 790  MLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFS 849

Query: 156  RLLSKAEKEKQIHGVKISRSDNPMSHLLFADDSFIFCRANIAETHHLKDILE 1
             LLSK E+E ++HG++I +    +SHLLFADDS I CRAN  E   L+ IL+
Sbjct: 850  ALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQ 901


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  180 bits (457), Expect = 9e-44
 Identities = 90/172 (52%), Positives = 119/172 (69%), Gaps = 1/172 (0%)
 Frame = -3

Query: 513  ISPSQSAFVKGRQIFDNIVLAHEIVRTLKRKK-GASGCMAIKLDLSKAFDKVEWSFLLET 337
            ISP+QSAFV GR I DNI++A E+   ++ K+ G  G  A KLD+SKA+D+VEWSFL + 
Sbjct: 762  ISPAQSAFVPGRLISDNILIADEMTHYMRNKRSGQVGYAAFKLDMSKAYDRVEWSFLHDM 821

Query: 336  MEALGFSEKWRNWINQCISTTSLSFKINGSPMGFLKPERGIRQGDPLSPFLFIICMEVFS 157
            M  LGF   W N I +C+ST +   ++NG       PERG+RQGDPLSP+LF++C E FS
Sbjct: 822  MLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGLRQGDPLSPYLFLLCAEGFS 881

Query: 156  RLLSKAEKEKQIHGVKISRSDNPMSHLLFADDSFIFCRANIAETHHLKDILE 1
             LLSK E+E ++HG++I +    +SHLLFADDS I CRAN  E   L+ IL+
Sbjct: 882  ALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANGGEAQQLQTILQ 933


>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
           gi|241926916|gb|EES00061.1| hypothetical protein
           SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score =  177 bits (448), Expect = 1e-42
 Identities = 92/172 (53%), Positives = 119/172 (69%), Gaps = 1/172 (0%)
 Frame = -3

Query: 513 ISPSQSAFVKGRQIFDNIVLAHEIVRTLKR-KKGASGCMAIKLDLSKAFDKVEWSFLLET 337
           IS SQSAFV GR I DN++LA+EIV  LK  KKGA G  AIKLD+SKA+D+VEWSFL   
Sbjct: 114 ISNSQSAFVPGRLITDNVLLAYEIVHHLKSIKKGAGGLAAIKLDMSKAYDRVEWSFLENM 173

Query: 336 MEALGFSEKWRNWINQCISTTSLSFKINGSPMGFLKPERGIRQGDPLSPFLFIICMEVFS 157
           M  +GF EKW   I +C++T +   K+N S    + P+RG+RQGDPLSP+LFIIC E  S
Sbjct: 174 MRKMGFDEKWVQLIMKCVTTVTYKIKVNDSYTQKIFPQRGLRQGDPLSPYLFIICAEGLS 233

Query: 156 RLLSKAEKEKQIHGVKISRSDNPMSHLLFADDSFIFCRANIAETHHLKDILE 1
            +L KAE++ +I G+KI R    ++HL FADDS I  RA  ++   L+ IL+
Sbjct: 234 AMLQKAEQKGKIEGIKICRGAPKVNHLFFADDSLILMRARASDALELRRILD 285