BLASTX nr result

ID: Coptis24_contig00012708 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012708
         (632 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003593490.1| hypothetical protein MTR_2g012750 [Medicago ...    62   7e-08

>ref|XP_003593490.1| hypothetical protein MTR_2g012750 [Medicago truncatula]
           gi|355482538|gb|AES63741.1| hypothetical protein
           MTR_2g012750 [Medicago truncatula]
          Length = 265

 Score = 62.4 bits (150), Expect = 7e-08
 Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
 Frame = -3

Query: 618 RGESPVKRSDQHWLNNRSDVGGKSVYAGQVTRPRNLMQNGVM------RDQGEXXXXXXX 457
           R ESP ++S    L        +++ + ++ + R+ M NG +      RD GE       
Sbjct: 139 RRESPARKSPARRLEQSP--AKRNIGSSRIVQRRDQMGNGGIKNQPHRRDAGEVSGRRSR 196

Query: 456 SPATRIDVGGNNRPGISRSQSGKRVVRSLGRNAVLAPEIG-QNLEGSKEKWQVKESLEDP 280
           SPATR D  G+ R  + RS S ++  +S G+     PE G + +E         ESLE+P
Sbjct: 197 SPATRTD-NGSTRSVVGRSLSARKTNQSPGKGRTAVPENGGRKMESKWPSTANDESLENP 255

Query: 279 LVSLECFIFL 250
           LVSLECFIFL
Sbjct: 256 LVSLECFIFL 265


Top