BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012683
         (854 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004134418.1| PREDICTED: putative SWI/SNF-related matrix-a...   177   2e-42
ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricin...   177   2e-42
emb|CAN71217.1| hypothetical protein VITISV_033485 [Vitis vinifera]   176   5e-42
ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabid...   174   2e-41
ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis ...   174   2e-41

>ref|XP_004134418.1| PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin subfamily A member 3-like 3-like
            [Cucumis sativus] gi|449523563|ref|XP_004168793.1|
            PREDICTED: putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 3-like [Cucumis sativus]
          Length = 1113

 Score =  177 bits (450), Expect = 2e-42
 Identities = 96/137 (70%), Positives = 105/137 (76%), Gaps = 7/137 (5%)
 Frame = -3

Query: 639  DFYEALFKRSKVQF-------DQKNREYVLKEFSGSKENMVLLMSLKAGGVGLNLTAASN 481
            D  E   KR ++ F        QK+RE VLKEFS SKE  V+L+SLKAGGVGLNLTAASN
Sbjct: 977  DLLEIPLKRKRIGFFRFDGKLSQKHRERVLKEFSESKEIKVMLISLKAGGVGLNLTAASN 1036

Query: 480  VFLMDPWWNPVVEEQTIMRIHRIGQKXXXXXXRFIVKDTVEERMQEVQTRKERMIL*ALT 301
            VF+MDPWWNP VEEQ IMRIHRIGQK      RFIVKDTVEERMQ+VQ RK+RMI  ALT
Sbjct: 1037 VFIMDPWWNPAVEEQAIMRIHRIGQKRRVRVRRFIVKDTVEERMQQVQARKQRMIAGALT 1096

Query: 300  DREVRSVRIEELKMLFR 250
            D EVR+ RIEELKMLFR
Sbjct: 1097 DEEVRTARIEELKMLFR 1113


>ref|XP_002529311.1| DNA repair helicase rad5,16, putative [Ricinus communis]
            gi|223531235|gb|EEF33080.1| DNA repair helicase rad5,16,
            putative [Ricinus communis]
          Length = 1051

 Score =  177 bits (450), Expect = 2e-42
 Identities = 94/124 (75%), Positives = 100/124 (80%)
 Frame = -3

Query: 621  FKRSKVQFDQKNREYVLKEFSGSKENMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPVVE 442
            F R   +  QK RE  LKEF+ +KE MVLLMSLKAGGVGLNLTAASNVFLMDPWWNP VE
Sbjct: 928  FLRFDGKLVQKQRERTLKEFNETKEKMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVE 987

Query: 441  EQTIMRIHRIGQKXXXXXXRFIVKDTVEERMQEVQTRKERMIL*ALTDREVRSVRIEELK 262
            EQ IMRIHRIGQK      RFIVKDT+EERMQ+VQ RK+RMI  ALTD EVRS RIEELK
Sbjct: 988  EQAIMRIHRIGQKRTVTVRRFIVKDTLEERMQQVQARKQRMIAGALTDEEVRSARIEELK 1047

Query: 261  MLFR 250
            MLFR
Sbjct: 1048 MLFR 1051


>emb|CAN71217.1| hypothetical protein VITISV_033485 [Vitis vinifera]
          Length = 1249

 Score =  176 bits (447), Expect = 5e-42
 Identities = 91/115 (79%), Positives = 98/115 (85%)
 Frame = -3

Query: 594  QKNREYVLKEFSGSKENMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPVVEEQTIMRIHR 415
            QK RE +LKEFS ++E MVLLMSLKAGGVGLNLTAASNVFLMDPWWNP VEEQ IMRIHR
Sbjct: 1135 QKQRERILKEFSETEEKMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHR 1194

Query: 414  IGQKXXXXXXRFIVKDTVEERMQEVQTRKERMIL*ALTDREVRSVRIEELKMLFR 250
            IGQ+      RFIVKDTVEERMQ+VQ RK+RMI  ALTD EVR+ RIEELKMLFR
Sbjct: 1195 IGQERTVRVRRFIVKDTVEERMQQVQARKQRMITGALTDEEVRTARIEELKMLFR 1249


>ref|NP_199166.1| Helicase protein with RING/U-box domain [Arabidopsis thaliana]
            gi|60390960|sp|Q9FIY7.1|SM3L3_ARATH RecName:
            Full=Putative SWI/SNF-related matrix-associated
            actin-dependent regulator of chromatin subfamily A member
            3-like 3; Short=SMARCA3-like protein 3
            gi|10178192|dbj|BAB11616.1| DNA repair protein-like
            [Arabidopsis thaliana] gi|332007595|gb|AED94978.1|
            Helicase protein with RING/U-box domain [Arabidopsis
            thaliana]
          Length = 1277

 Score =  174 bits (441), Expect = 2e-41
 Identities = 91/124 (73%), Positives = 100/124 (80%)
 Frame = -3

Query: 621  FKRSKVQFDQKNREYVLKEFSGSKENMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPVVE 442
            F R   +  QK RE VLKEF+ +K+  +LLMSLKAGGVGLNLTAAS+VFLMDPWWNP VE
Sbjct: 1154 FLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVE 1213

Query: 441  EQTIMRIHRIGQKXXXXXXRFIVKDTVEERMQEVQTRKERMIL*ALTDREVRSVRIEELK 262
            EQ IMRIHRIGQK      RFIVKDTVEERMQ+VQ RK+RMI  ALTD EVRS R+EELK
Sbjct: 1214 EQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRSARLEELK 1273

Query: 261  MLFR 250
            MLFR
Sbjct: 1274 MLFR 1277


>ref|XP_002865418.1| SNF2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]
            gi|297311253|gb|EFH41677.1| SNF2 domain-containing
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1305

 Score =  174 bits (441), Expect = 2e-41
 Identities = 91/124 (73%), Positives = 100/124 (80%)
 Frame = -3

Query: 621  FKRSKVQFDQKNREYVLKEFSGSKENMVLLMSLKAGGVGLNLTAASNVFLMDPWWNPVVE 442
            F R   +  QK RE VLKEF+ +K+  +LLMSLKAGGVGLNLTAAS+VFLMDPWWNP VE
Sbjct: 1182 FLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVE 1241

Query: 441  EQTIMRIHRIGQKXXXXXXRFIVKDTVEERMQEVQTRKERMIL*ALTDREVRSVRIEELK 262
            EQ IMRIHRIGQK      RFIVKDTVEERMQ+VQ RK+RMI  ALTD EVRS R+EELK
Sbjct: 1242 EQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGALTDEEVRSARLEELK 1301

Query: 261  MLFR 250
            MLFR
Sbjct: 1302 MLFR 1305