BLASTX nr result
ID: Coptis24_contig00012659
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00012659
(1914 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003633575.1| PREDICTED: uncharacterized protein LOC100855... 84 2e-32
emb|CBI24866.3| unnamed protein product [Vitis vinifera] 84 2e-32
ref|XP_002313291.1| predicted protein [Populus trichocarpa] gi|2... 74 4e-26
ref|XP_002299951.1| predicted protein [Populus trichocarpa] gi|2... 78 2e-24
ref|XP_002513178.1| poly-A binding protein, putative [Ricinus co... 74 4e-21
>ref|XP_003633575.1| PREDICTED: uncharacterized protein LOC100855398 [Vitis vinifera]
Length = 700
Score = 84.0 bits (206), Expect(2) = 2e-32
Identities = 54/119 (45%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Frame = -1
Query: 357 SMLKRNTSTTYDSASDNEGYDDVNV-GHRVMSASQTGTSFGNKDDDSLMVQYSVANDTND 181
+ML+ T DSASDNEGYDDVN+ G R+M SQ+GT+ GNK DDSLMVQYSVA + ++
Sbjct: 355 TMLESETGLASDSASDNEGYDDVNLMGRRIMDVSQSGTTGGNKGDDSLMVQYSVAKNADE 414
Query: 180 LARN-RVKDQ--------NPXXXXXXXXXXXTWKPP-HYQASQEMKEFKNLEGVQNRVT 34
R R DQ TWKPP HYQ +E++E + VQ T
Sbjct: 415 GMRTMRSIDQGQPSAVANTSRKIVNISVNVNTWKPPAHYQGPREVEEVDGQKPVQGNET 473
Score = 83.6 bits (205), Expect(2) = 2e-32
Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Frame = -3
Query: 673 LKSLCNVVSTSNRDSSVDDQPQRISSVARFPSAVTTIFKXXXXXXXXXXXVRGFANVFDR 494
LK L +VVSTS DSS+DD+PQR+ SVAR PSA+ T K VR NVFDR
Sbjct: 237 LKRLRSVVSTSTGDSSLDDRPQRLQSVARMPSAMATAIKAVAEAAEDVIKVRSSGNVFDR 296
Query: 493 L---DHGLNVSRVTNYGSEVKATPMEDAEYEDFNDNVIETQSTHPKRNKYVE 347
L G+++S V++ + + T ED YEDF +T+STH +R+ Y E
Sbjct: 297 LGRGPRGMDLSEVSDQQAGFRETGTEDGGYEDFKQIPEKTRSTHLQRSAYSE 348
>emb|CBI24866.3| unnamed protein product [Vitis vinifera]
Length = 694
Score = 84.0 bits (206), Expect(2) = 2e-32
Identities = 54/119 (45%), Positives = 67/119 (56%), Gaps = 11/119 (9%)
Frame = -1
Query: 357 SMLKRNTSTTYDSASDNEGYDDVNV-GHRVMSASQTGTSFGNKDDDSLMVQYSVANDTND 181
+ML+ T DSASDNEGYDDVN+ G R+M SQ+GT+ GNK DDSLMVQYSVA + ++
Sbjct: 349 TMLESETGLASDSASDNEGYDDVNLMGRRIMDVSQSGTTGGNKGDDSLMVQYSVAKNADE 408
Query: 180 LARN-RVKDQ--------NPXXXXXXXXXXXTWKPP-HYQASQEMKEFKNLEGVQNRVT 34
R R DQ TWKPP HYQ +E++E + VQ T
Sbjct: 409 GMRTMRSIDQGQPSAVANTSRKIVNISVNVNTWKPPAHYQGPREVEEVDGQKPVQGNET 467
Score = 83.6 bits (205), Expect(2) = 2e-32
Identities = 50/112 (44%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Frame = -3
Query: 673 LKSLCNVVSTSNRDSSVDDQPQRISSVARFPSAVTTIFKXXXXXXXXXXXVRGFANVFDR 494
LK L +VVSTS DSS+DD+PQR+ SVAR PSA+ T K VR NVFDR
Sbjct: 231 LKRLRSVVSTSTGDSSLDDRPQRLQSVARMPSAMATAIKAVAEAAEDVIKVRSSGNVFDR 290
Query: 493 L---DHGLNVSRVTNYGSEVKATPMEDAEYEDFNDNVIETQSTHPKRNKYVE 347
L G+++S V++ + + T ED YEDF +T+STH +R+ Y E
Sbjct: 291 LGRGPRGMDLSEVSDQQAGFRETGTEDGGYEDFKQIPEKTRSTHLQRSAYSE 342
>ref|XP_002313291.1| predicted protein [Populus trichocarpa] gi|222849699|gb|EEE87246.1|
predicted protein [Populus trichocarpa]
Length = 762
Score = 73.9 bits (180), Expect(2) = 4e-26
Identities = 46/112 (41%), Positives = 59/112 (52%), Gaps = 6/112 (5%)
Frame = -1
Query: 357 SMLKRNTSTTYDSASDNEGYDDVNV-GHRVMSASQTGTSFGNKDDDSLMVQYSVANDTND 181
+M++ T D SDNEGYDD NV HRVM S TGTS+G+K +D+LM +Y++A D
Sbjct: 389 NMMEHEAGLTSDLMSDNEGYDDANVVDHRVMDVSHTGTSYGSKGEDALMSKYNLAKD-QS 447
Query: 180 LARNRVKDQNPXXXXXXXXXXXTWKPPHYQ-----ASQEMKEFKNLEGVQNR 40
A +K N TW+PPHYQ A K +N EG R
Sbjct: 448 AANTSLKIVN------ISVNVNTWRPPHYQEPRDAAMDNQKSVQNNEGNAGR 493
Score = 72.4 bits (176), Expect(2) = 4e-26
Identities = 38/107 (35%), Positives = 61/107 (57%)
Frame = -3
Query: 673 LKSLCNVVSTSNRDSSVDDQPQRISSVARFPSAVTTIFKXXXXXXXXXXXVRGFANVFDR 494
LK L +VVSTS D+S+ D+P+R+ S+AR P+ + T+ K V+ +VFDR
Sbjct: 275 LKRLRSVVSTSTEDTSLVDRPRRLQSIARVPNPMATVLKAVQEAAEDVVKVKSSGSVFDR 334
Query: 493 LDHGLNVSRVTNYGSEVKATPMEDAEYEDFNDNVIETQSTHPKRNKY 353
L ++ S T +E + +ED EYE+ N + S +P+R+K+
Sbjct: 335 LGRDMDASLTTEQVTEFRDAAVEDDEYEELNGIQEQNHSNYPQRSKF 381
>ref|XP_002299951.1| predicted protein [Populus trichocarpa] gi|222847209|gb|EEE84756.1|
predicted protein [Populus trichocarpa]
Length = 678
Score = 78.2 bits (191), Expect(2) = 2e-24
Identities = 40/106 (37%), Positives = 63/106 (59%)
Frame = -3
Query: 670 KSLCNVVSTSNRDSSVDDQPQRISSVARFPSAVTTIFKXXXXXXXXXXXVRGFANVFDRL 491
K L +VVS S D+S+ D+P+R+ S+AR P+ + T+ K V+ +VFDRL
Sbjct: 236 KRLRSVVSASTEDTSLVDRPRRLQSIARVPNPMATVLKAVREAAEDVVKVKSSGSVFDRL 295
Query: 490 DHGLNVSRVTNYGSEVKATPMEDAEYEDFNDNVIETQSTHPKRNKY 353
++ S +T +E + +ED EYEDFN+ +T S +P+R+KY
Sbjct: 296 GRDMDASLITEQVAEFRDHAVEDDEYEDFNEIQEQTHSNYPRRSKY 341
Score = 62.8 bits (151), Expect(2) = 2e-24
Identities = 42/107 (39%), Positives = 54/107 (50%), Gaps = 1/107 (0%)
Frame = -1
Query: 360 TSMLKRNTSTTYDSASDNEGYDDVN-VGHRVMSASQTGTSFGNKDDDSLMVQYSVANDTN 184
T+M T SD E YDD + VGHRVM SQTGT G+K DSLM Y+VA D +
Sbjct: 348 TNMTGHEAGLTTGLMSDYEVYDDSSPVGHRVMDVSQTGTYLGSKGKDSLMSNYNVAKDQD 407
Query: 183 DLARNRVKDQNPXXXXXXXXXXXTWKPPHYQASQEMKEFKNLEGVQN 43
++ TW+PPHYQ S++ NL+ VQ+
Sbjct: 408 ---QSVSAANTSRKIVNISVNVNTWRPPHYQESRD-TVMDNLKSVQD 450
>ref|XP_002513178.1| poly-A binding protein, putative [Ricinus communis]
gi|223547676|gb|EEF49169.1| poly-A binding protein,
putative [Ricinus communis]
Length = 514
Score = 73.6 bits (179), Expect(2) = 4e-21
Identities = 47/111 (42%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Frame = -1
Query: 354 MLKRNTSTTYDSASDNEGYDDVNV-GHRVMSASQTGTSFGNKDDDSLMVQYSVAN--DTN 184
+++ T DS DNE YDD +V GH VM S+TGTS G+K +DSLMVQYSV D +
Sbjct: 168 IMESETGLVGDSMFDNEVYDDDDVMGHGVMDVSETGTSGGSKREDSLMVQYSVGRSADND 227
Query: 183 DLARNRVKDQN-----PXXXXXXXXXXXTWKPPHYQASQEMKEFKNLEGVQ 46
D+ R KD++ TWKPPH Q S+ E N VQ
Sbjct: 228 DMRTTRNKDRDQPVSAAKAVVNIPMNLNTWKPPHCQESRRFPEMGNWNSVQ 278
Score = 56.2 bits (134), Expect(2) = 4e-21
Identities = 34/105 (32%), Positives = 57/105 (54%)
Frame = -3
Query: 676 TLKSLCNVVSTSNRDSSVDDQPQRISSVARFPSAVTTIFKXXXXXXXXXXXVRGFANVFD 497
++K L +VVS S +SS+ D+P+RI S+AR P+ + T+ K V+ NVFD
Sbjct: 57 SMKRLRSVVSISTAESSLVDRPRRIQSIARVPNPMATVIKAVQEAAEDVVKVKSSRNVFD 116
Query: 496 RLDHGLNVSRVTNYGSEVKATPMEDAEYEDFNDNVIETQSTHPKR 362
RL ++ T+ ++ +E YE+ N N +T+S + +R
Sbjct: 117 RLGREMD---TTDQIRDISHDAVESEVYEEVNPNPDQTESFYLQR 158