BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012649
         (220 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|2...    89   4e-16
ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containi...    88   8e-16
emb|CBI38708.3| unnamed protein product [Vitis vinifera]               88   8e-16
ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containi...    81   8e-14
ref|XP_003619886.1| Pentatricopeptide repeat-containing protein ...    80   2e-13

>ref|XP_002301440.1| predicted protein [Populus trichocarpa] gi|222843166|gb|EEE80713.1|
           predicted protein [Populus trichocarpa]
          Length = 503

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 44/73 (60%), Positives = 56/73 (76%)
 Frame = -2

Query: 219 VVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLEIENVEGIKGLIN 40
           VVYRTLL+ALCDNG +EEA+++LGK+LRKGLK PK+      L++    E++E  K LIN
Sbjct: 226 VVYRTLLDALCDNGQVEEAMEILGKILRKGLKAPKRYRHRLDLSQCNNCEDIEATKLLIN 285

Query: 39  EALIKGAVPSLVS 1
           EALI+G VPSL S
Sbjct: 286 EALIRGGVPSLAS 298


>ref|XP_002268415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Vitis vinifera]
          Length = 503

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = -2

Query: 213 YRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLEIENVEGIKGLINEA 34
           YRTLL+ALCDNGH+EEA+++LGKVL+KGLK PK+      L+     E++E  KGLINEA
Sbjct: 228 YRTLLDALCDNGHVEEALEILGKVLKKGLKAPKRCRGHLDLSYCCNGEDIERTKGLINEA 287

Query: 33  LIKGAVPSLVS 1
           LI+G VPS+ S
Sbjct: 288 LIRGGVPSMAS 298


>emb|CBI38708.3| unnamed protein product [Vitis vinifera]
          Length = 466

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 43/71 (60%), Positives = 55/71 (77%)
 Frame = -2

Query: 213 YRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLEIENVEGIKGLINEA 34
           YRTLL+ALCDNGH+EEA+++LGKVL+KGLK PK+      L+     E++E  KGLINEA
Sbjct: 228 YRTLLDALCDNGHVEEALEILGKVLKKGLKAPKRCRGHLDLSYCCNGEDIERTKGLINEA 287

Query: 33  LIKGAVPSLVS 1
           LI+G VPS+ S
Sbjct: 288 LIRGGVPSMAS 298


>ref|XP_003534128.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g05600-like [Glycine max]
          Length = 502

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 41/73 (56%), Positives = 54/73 (73%)
 Frame = -2

Query: 219 VVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLEIENVEGIKGLIN 40
           VVYRTLL+ALCD G  EEA ++LGK+LRKGLK PK+      L +  + +++E  K +I+
Sbjct: 226 VVYRTLLDALCDAGKFEEAEEILGKILRKGLKAPKRCHSRLDLDQLSDGKDIESAKRMIH 285

Query: 39  EALIKGAVPSLVS 1
           EALIKG+VPSL S
Sbjct: 286 EALIKGSVPSLAS 298


>ref|XP_003619886.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355494901|gb|AES76104.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 576

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 39/73 (53%), Positives = 55/73 (75%)
 Frame = -2

Query: 219 VVYRTLLEALCDNGHLEEAVQLLGKVLRKGLKTPKQRLQGFTLTRFLEIENVEGIKGLIN 40
           V+YRTLL+ALCDNG  +EAV++LGK+LRKGLK PK+      +T+  + ++VE  K  I+
Sbjct: 208 VIYRTLLDALCDNGKFDEAVEILGKILRKGLKAPKRCYNRLDITQCGDGKDVEVTKRWIH 267

Query: 39  EALIKGAVPSLVS 1
           EAL++G+VPS  S
Sbjct: 268 EALVRGSVPSTAS 280