BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012612
         (1683 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding prote...   629   e-178
emb|CBI16387.3| unnamed protein product [Vitis vinifera]              617   e-174
ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding prote...   609   e-172
ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP...   570   e-160
ref|XP_003597428.1| RNA-binding protein [Medicago truncatula] gi...   565   e-158

>ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform
            1 [Vitis vinifera]
          Length = 447

 Score =  629 bits (1623), Expect = e-178
 Identities = 316/449 (70%), Positives = 352/449 (78%), Gaps = 1/449 (0%)
 Frame = +1

Query: 19   SQQQQQWTMSGGGAQQAATWSVPPTSNYNHHNYQPTTLEEIRTLWIGDLQYWVEENYLNT 198
            + QQQQW M    A  A   S+     Y     QPT++EE+RTLWIGDLQYWV+ENYL++
Sbjct: 5    AHQQQQW-MHPSHASAATVSSMASAQPYT----QPTSVEEVRTLWIGDLQYWVDENYLHS 59

Query: 199  CFAHTGEVMSIKIIRNKITQQPEGYGFVEFASHGAAERVLQTYNGTLMPGTDQPFRLNWA 378
            CFAHTGEV+SIKIIRNKIT QPEGYGFVEF SH AAER+LQ YNGT MPGT+Q FRLNWA
Sbjct: 60   CFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWA 119

Query: 379  SFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYG 558
            SFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGR+KGYG
Sbjct: 120  SFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYG 179

Query: 559  FVKFADEMERNRAMSEMNGVYCSSRPMRISAATPKKATGFQQPY-TAPKAVYPTPAFGTA 735
            FVKF+DEMERNRAM+EMNGVYCS+RPMRISAATPKK TGFQQ Y  A KA+YP PA+ T 
Sbjct: 180  FVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTP 239

Query: 736  AVQPFPAVDNDITNTTIFVGGLDPNVTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTR 915
             +Q  PA DNDI NTTIFVG LDPNVTEEEL+QIF+QFG+LVY K   G+GCGFVQFGTR
Sbjct: 240  PLQALPA-DNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTR 298

Query: 916  QSAEAAIQRLNGTMIGQQTVRLSWGRSMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXX 1095
             SAE AIQR+ GT+IGQ  VR+SWGRS TAKQD PG+W Q ADP+QWS            
Sbjct: 299  TSAEEAIQRMQGTVIGQLVVRISWGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDA 358

Query: 1096 XXXXXXPDPXXXXXXXXXXXXXXXXXVEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDK 1275
                   DP                  EG+Q++ AMAGAVP+VEQ++ELYDPLATPDVDK
Sbjct: 359  YPYGATQDPSLYAYGAYAGYLQYPQQAEGVQDLAAMAGAVPAVEQRDELYDPLATPDVDK 418

Query: 1276 LNSAYLAVHGSAMVGRPLWLKTSALYQQA 1362
            LN+AYLAVHGSA++GR LWLKTS   Q A
Sbjct: 419  LNAAYLAVHGSAILGRSLWLKTSPFSQMA 447


>emb|CBI16387.3| unnamed protein product [Vitis vinifera]
          Length = 445

 Score =  617 bits (1590), Expect = e-174
 Identities = 313/449 (69%), Positives = 348/449 (77%), Gaps = 1/449 (0%)
 Frame = +1

Query: 19   SQQQQQWTMSGGGAQQAATWSVPPTSNYNHHNYQPTTLEEIRTLWIGDLQYWVEENYLNT 198
            + QQQQW M    A  A   S+     Y     QPT++EE+RTLWIGDLQYWV+ENYL++
Sbjct: 5    AHQQQQW-MHPSHASAATVSSMASAQPYT----QPTSVEEVRTLWIGDLQYWVDENYLHS 59

Query: 199  CFAHTGEVMSIKIIRNKITQQPEGYGFVEFASHGAAERVLQTYNGTLMPGTDQPFRLNWA 378
            CFAHTGEV+SIKIIRNKIT QPEGYGFVEF SH AAER+LQ YNGT MPGT+Q FRLNWA
Sbjct: 60   CFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWA 119

Query: 379  SFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYG 558
            SFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGR+KGYG
Sbjct: 120  SFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYG 179

Query: 559  FVKFADEMERNRAMSEMNGVYCSSRPMRISAATPKKATGFQQPY-TAPKAVYPTPAFGTA 735
            FVKF+DEMERNRAM+EMNGVYCS+RPMRISAATPKK TGFQQ Y  A KA+YP PA+ T 
Sbjct: 180  FVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTP 239

Query: 736  AVQPFPAVDNDITNTTIFVGGLDPNVTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTR 915
             +Q  PA DNDI NTTIFVG LDPNVTEEEL+QIF+QFG+LVY K   G+GCGFVQFGTR
Sbjct: 240  PLQALPA-DNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTR 298

Query: 916  QSAEAAIQRLNGTMIGQQTVRLSWGRSMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXX 1095
             SAE AIQR+ GT+IGQ  VR+SWGRS TAKQD PG+W Q ADP+QWS            
Sbjct: 299  TSAEEAIQRMQGTVIGQLVVRISWGRSPTAKQDLPGSWGQQADPSQWSSAYYGYGQGYDA 358

Query: 1096 XXXXXXPDPXXXXXXXXXXXXXXXXXVEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDK 1275
                   DP                  +    + AMAGAVP+VEQ++ELYDPLATPDVDK
Sbjct: 359  YPYGATQDPSLYAYGAYAGYLQYPQ--QARYYLAAMAGAVPAVEQRDELYDPLATPDVDK 416

Query: 1276 LNSAYLAVHGSAMVGRPLWLKTSALYQQA 1362
            LN+AYLAVHGSA++GR LWLKTS   Q A
Sbjct: 417  LNAAYLAVHGSAILGRSLWLKTSPFSQMA 445


>ref|XP_003632115.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like isoform
            2 [Vitis vinifera]
          Length = 438

 Score =  609 bits (1570), Expect = e-172
 Identities = 311/449 (69%), Positives = 346/449 (77%), Gaps = 1/449 (0%)
 Frame = +1

Query: 19   SQQQQQWTMSGGGAQQAATWSVPPTSNYNHHNYQPTTLEEIRTLWIGDLQYWVEENYLNT 198
            + QQQQW M    A  A   S+     Y     QPT++EE+RTLWIGDLQYWV+ENYL++
Sbjct: 5    AHQQQQW-MHPSHASAATVSSMASAQPYT----QPTSVEEVRTLWIGDLQYWVDENYLHS 59

Query: 199  CFAHTGEVMSIKIIRNKITQQPEGYGFVEFASHGAAERVLQTYNGTLMPGTDQPFRLNWA 378
            CFAHTGEV+SIKIIRNKIT QPEGYGFVEF SH AAER+LQ YNGT MPGT+Q FRLNWA
Sbjct: 60   CFAHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERILQAYNGTQMPGTEQTFRLNWA 119

Query: 379  SFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYG 558
            SFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGR+KGYG
Sbjct: 120  SFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGYG 179

Query: 559  FVKFADEMERNRAMSEMNGVYCSSRPMRISAATPKKATGFQQPY-TAPKAVYPTPAFGTA 735
            FVKF+DEMERNRAM+EMNGVYCS+RPMRISAATPKK TGFQQ Y  A KA+YP PA+ T 
Sbjct: 180  FVKFSDEMERNRAMTEMNGVYCSTRPMRISAATPKKTTGFQQQYAAAAKALYPAPAYTTP 239

Query: 736  AVQPFPAVDNDITNTTIFVGGLDPNVTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTR 915
             +Q  PA DNDI NTTIFVG LDPNVTEEEL+QIF+QFG+LVY K   G+GCGFVQFGTR
Sbjct: 240  PLQALPA-DNDINNTTIFVGNLDPNVTEEELKQIFSQFGELVYVKIPAGRGCGFVQFGTR 298

Query: 916  QSAEAAIQRLNGTMIGQQTVRLSWGRSMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXX 1095
             SAE AIQR+ GT+IGQ  VR+SWGRS TAKQ         ADP+QWS            
Sbjct: 299  TSAEEAIQRMQGTVIGQLVVRISWGRSPTAKQ---------ADPSQWSSAYYGYGQGYDA 349

Query: 1096 XXXXXXPDPXXXXXXXXXXXXXXXXXVEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDK 1275
                   DP                  EG+Q++ AMAGAVP+VEQ++ELYDPLATPDVDK
Sbjct: 350  YPYGATQDPSLYAYGAYAGYLQYPQQAEGVQDLAAMAGAVPAVEQRDELYDPLATPDVDK 409

Query: 1276 LNSAYLAVHGSAMVGRPLWLKTSALYQQA 1362
            LN+AYLAVHGSA++GR LWLKTS   Q A
Sbjct: 410  LNAAYLAVHGSAILGRSLWLKTSPFSQMA 438


>ref|XP_004152401.1| PREDICTED: polyadenylate-binding protein RBP47B'-like [Cucumis
            sativus]
          Length = 422

 Score =  570 bits (1468), Expect = e-160
 Identities = 294/430 (68%), Positives = 326/430 (75%)
 Frame = +1

Query: 70   ATWSVPPTSNYNHHNYQPTTLEEIRTLWIGDLQYWVEENYLNTCFAHTGEVMSIKIIRNK 249
            AT +  PT    HH  QPTT+EE+RTLWIGDLQYWV+E+YLN+CFAHTGEV+SIKIIRNK
Sbjct: 2    ATLAGQPT----HH--QPTTVEEVRTLWIGDLQYWVDESYLNSCFAHTGEVISIKIIRNK 55

Query: 250  ITQQPEGYGFVEFASHGAAERVLQTYNGTLMPGTDQPFRLNWASFGIGERRPDAGPEHSI 429
            IT QPEGYGFVEF SH AAER+LQTYNGT MPGT+Q FRLNWASFGIGERRPDAGPEHSI
Sbjct: 56   ITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSI 115

Query: 430  FVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNRAMSEM 609
            FVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADE ERNRAMSEM
Sbjct: 116  FVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADENERNRAMSEM 175

Query: 610  NGVYCSSRPMRISAATPKKATGFQQPYTAPKAVYPTPAFGTAAVQPFPAVDNDITNTTIF 789
            NGVYCS+RPMRISAATPKK  G QQ Y+  KA+YP PA+ T +V   PA D D  NTTIF
Sbjct: 176  NGVYCSTRPMRISAATPKKTIGVQQQYSLGKAMYPVPAY-TTSVPVLPA-DYDANNTTIF 233

Query: 790  VGGLDPNVTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTRQSAEAAIQRLNGTMIGQQ 969
            VG LDPN+TEEEL+Q F QFG++ Y K   GKGCGFVQFGTR SAE AIQ++ G +IGQQ
Sbjct: 234  VGNLDPNITEEELKQTFLQFGEIAYVKIPAGKGCGFVQFGTRASAEEAIQKMQGKIIGQQ 293

Query: 970  TVRLSWGRSMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXXXXXXXXPDPXXXXXXXXX 1149
             VR SWGR+  AKQD    W Q  DPNQWS                   DP         
Sbjct: 294  VVRTSWGRNPAAKQDLT-TWGQQVDPNQWS-AYYGYGGTYDAYGYGVVQDPSLYGYGAYS 351

Query: 1150 XXXXXXXXVEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDKLNSAYLAVHGSAMVGRPL 1329
                    V+G+Q++  +AGAVPSVEQ EE  D L TPDVD LN AYL+ H SA++G PL
Sbjct: 352  GYASYPQQVDGVQDLATVAGAVPSVEQGEEWNDTLDTPDVDCLNDAYLSKHESAILGWPL 411

Query: 1330 WLKTSALYQQ 1359
            WL TS+L +Q
Sbjct: 412  WLTTSSLVRQ 421


>ref|XP_003597428.1| RNA-binding protein [Medicago truncatula] gi|355486476|gb|AES67679.1|
            RNA-binding protein [Medicago truncatula]
          Length = 428

 Score =  565 bits (1456), Expect = e-158
 Identities = 284/426 (66%), Positives = 325/426 (76%), Gaps = 10/426 (2%)
 Frame = +1

Query: 115  YQPTTLEEIRTLWIGDLQYWVEENYLNTCFAHTGEVMSIKIIRNKITQQPEGYGFVEFAS 294
            +QP +LEE+RTLWIGDLQYWV+ENYL  CF+HTGEV+SIKIIRNKIT QPEGYGF+EF S
Sbjct: 6    HQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVS 65

Query: 295  HGAAERVLQTYNGTLMPGTDQPFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQ 474
            H AAERVLQTYNGT MPGT+Q FRLNWASFGIGERRPDAGP+HSIFVGDLAPDVTDYLLQ
Sbjct: 66   HSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQ 125

Query: 475  ETFRAQYPSVRGAKVVTDPNTGRSKGYGFVKFADEMERNRAMSEMNGVYCSSRPMRISAA 654
            ETFR  Y SVRGAKVVTDPNTGRSKGYGFVKF+DE ERNRAMSEMNGVYCS+RPMRISAA
Sbjct: 126  ETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185

Query: 655  TPKKATGFQQ-PYTA-------PKAVYPTPAFGTAAVQPFPAVDNDITNTTIFVGGLDPN 810
            TPKK TG+QQ PY A       PKA+YP PA+ TA V   P  + D+ NTTI+VG LD N
Sbjct: 186  TPKKTTGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPP-EYDVNNTTIYVGNLDLN 244

Query: 811  VTEEELRQIFAQFGDLVYAKTIPGKGCGFVQFGTRQSAEAAIQRLNGTMIGQQTVRLSWG 990
            V+EEEL+Q F QFG++V  K  PGK CGFVQFG R SAE AIQ++ G ++GQQ +R+SWG
Sbjct: 245  VSEEELKQNFLQFGEIVSVKVHPGKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWG 304

Query: 991  RSMTAKQDQPGAWAQPADPNQWSXXXXXXXXXXXXXXXXXXPDPXXXXXXXXXXXXXXXX 1170
            R  TA+QD PG W Q  D +QWS                   DP                
Sbjct: 305  RPQTARQDVPGGWGQQVDQSQWSAYYGYGQPGYEAYAYGAAQDPSMYAYAGYASYAQYPQ 364

Query: 1171 XVEGMQEMVAMAGAVPSVEQKEELYDPLATPDVDKLNSAYLAVHGSAMVGRPLWLKT--S 1344
             VEG Q++ AM  +VP++EQ+EELYDPLA PDVDKLN+AYL+VHG+A++GR LW KT  S
Sbjct: 365  QVEGAQDVSAM--SVPTLEQREELYDPLAMPDVDKLNAAYLSVHGNAILGRSLWHKTHSS 422

Query: 1345 ALYQQA 1362
            +L QQA
Sbjct: 423  SLQQQA 428