BLASTX nr result

ID: Coptis24_contig00012593 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012593
         (568 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325709.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
ref|XP_002518012.1| conserved hypothetical protein [Ricinus comm...    79   4e-13
ref|XP_003525160.1| PREDICTED: protein SUPPRESSOR OF GENE SILENC...    78   1e-12
emb|CBI27700.3| unnamed protein product [Vitis vinifera]               77   3e-12
ref|XP_002267929.1| PREDICTED: protein SUPPRESSOR OF GENE SILENC...    77   3e-12

>ref|XP_002325709.1| predicted protein [Populus trichocarpa] gi|222862584|gb|EEF00091.1|
           predicted protein [Populus trichocarpa]
          Length = 303

 Score = 80.1 bits (196), Expect = 2e-13
 Identities = 35/54 (64%), Positives = 42/54 (77%)
 Frame = +3

Query: 3   LHKHFANQGTDRHTWETNHVLYYPGGKCQLYGYMALKEDIDNFNRHCQAQLLLE 164
           LHKHFA QGTDR+ W+   VL+Y GGK QLYGYMALKED+D FN+H Q +  L+
Sbjct: 48  LHKHFAEQGTDRNAWDRRRVLFYQGGKRQLYGYMALKEDLDLFNQHSQGKSRLK 101


>ref|XP_002518012.1| conserved hypothetical protein [Ricinus communis]
           gi|223542994|gb|EEF44530.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 634

 Score = 79.3 bits (194), Expect = 4e-13
 Identities = 33/54 (61%), Positives = 43/54 (79%)
 Frame = +3

Query: 3   LHKHFANQGTDRHTWETNHVLYYPGGKCQLYGYMALKEDIDNFNRHCQAQLLLE 164
           LHKHF +QGTDR+ W+   VL+YPGGK QLYGYMA+KED++ FN+H Q +  L+
Sbjct: 384 LHKHFVDQGTDRNAWDRRRVLFYPGGKRQLYGYMAVKEDLEIFNQHSQGRSKLK 437


>ref|XP_003525160.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Glycine
           max]
          Length = 645

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
 Frame = +3

Query: 3   LHKHFANQGTDRHTWETNHV-LYYPGGKCQLYGYMALKEDIDNFNRHCQAQLLLE 164
           LHKHFA QGTDR  W ++H  L+ PGG+ QLYGYMA+KED+D FNRHCQ +  L+
Sbjct: 389 LHKHFAEQGTDRDAWFSHHRRLFLPGGRRQLYGYMAIKEDLDFFNRHCQGKSRLK 443


>emb|CBI27700.3| unnamed protein product [Vitis vinifera]
          Length = 469

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 33/54 (61%), Positives = 40/54 (74%)
 Frame = +3

Query: 3   LHKHFANQGTDRHTWETNHVLYYPGGKCQLYGYMALKEDIDNFNRHCQAQLLLE 164
           LHKHFA QGTDR  W+   V +YPGGK QLYGYMA+KED+  FN+H Q +  L+
Sbjct: 244 LHKHFAEQGTDREAWDRRRVPFYPGGKRQLYGYMAIKEDLTLFNQHSQGKSKLK 297


>ref|XP_002267929.1| PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Vitis
           vinifera]
          Length = 718

 Score = 76.6 bits (187), Expect = 3e-12
 Identities = 33/54 (61%), Positives = 40/54 (74%)
 Frame = +3

Query: 3   LHKHFANQGTDRHTWETNHVLYYPGGKCQLYGYMALKEDIDNFNRHCQAQLLLE 164
           LHKHFA QGTDR  W+   V +YPGGK QLYGYMA+KED+  FN+H Q +  L+
Sbjct: 468 LHKHFAEQGTDREAWDRRRVPFYPGGKRQLYGYMAIKEDLTLFNQHSQGKSKLK 521


Top