BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012322
         (427 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EIE25472.1| DEAD-box RNA helicase [Coccomyxa subellipsoidea C...    69   4e-24
ref|XP_001690022.1| DEAD-box RNA helicase [Chlamydomonas reinhar...    74   9e-23
gb|EME28570.1| ATP-dependent RNA helicase [Galdieria sulphuraria]      66   8e-22
ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox...    70   1e-21
ref|XP_003366776.1| ATP-dependent RNA helicase Dbp2 [Trichinella...    66   4e-21

>gb|EIE25472.1| DEAD-box RNA helicase [Coccomyxa subellipsoidea C-169]
          Length = 461

 Score = 68.6 bits (166), Expect(2) = 4e-24
 Identities = 33/52 (63%), Positives = 37/52 (71%)
 Frame = +2

Query: 167 CH*TAENLRLNGWPALSILGDNAQSERDWVRAEFKSDRSLIMIATDVDARGL 322
           C      LR  GWPALSI GD +Q ERDWV AEFK+ +S IM+ATDV ARGL
Sbjct: 301 CDAVTRQLRTEGWPALSIHGDKSQQERDWVLAEFKAGKSPIMLATDVAARGL 352



 Score = 67.8 bits (164), Expect(2) = 4e-24
 Identities = 34/61 (55%), Positives = 44/61 (72%)
 Frame = +3

Query: 3   VIIGSSDLKANPSINQVIEVVTDGEMHNRLIKLLNELMDGSRILIFVETKKGCDHVTRQL 182
           V IGS DLKAN  I+Q  + +++ + +  L +LL   MDGSR+LIF ETK+GCD VTRQL
Sbjct: 249 VTIGSRDLKANHLIDQHFQFLSEDDKYRALSRLLEREMDGSRLLIFCETKRGCDAVTRQL 308

Query: 183 R 185
           R
Sbjct: 309 R 309


>ref|XP_001690022.1| DEAD-box RNA helicase [Chlamydomonas reinhardtii]
           gi|158284010|gb|EDP09760.1| DEAD-box RNA helicase
           [Chlamydomonas reinhardtii]
          Length = 513

 Score = 73.9 bits (180), Expect(2) = 9e-23
 Identities = 39/61 (63%), Positives = 46/61 (75%)
 Frame = +3

Query: 3   VIIGSSDLKANPSINQVIEVVTDGEMHNRLIKLLNELMDGSRILIFVETKKGCDHVTRQL 182
           VIIGS DLKAN +I QV+E+V     + RL KLL+  MDG RILIFVETK+GCD + RQL
Sbjct: 315 VIIGSPDLKANHNIRQVVEMVEGFAKYPRLRKLLDGEMDGRRILIFVETKRGCDELVRQL 374

Query: 183 R 185
           R
Sbjct: 375 R 375



 Score = 57.8 bits (138), Expect(2) = 9e-23
 Identities = 28/52 (53%), Positives = 34/52 (65%)
 Frame = +2

Query: 167 CH*TAENLRLNGWPALSILGDNAQSERDWVRAEFKSDRSLIMIATDVDARGL 322
           C      LR +G+PAL + GD +Q ERDWV  EFK+    IM+ATDV ARGL
Sbjct: 367 CDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHPIMLATDVAARGL 418


>gb|EME28570.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
          Length = 540

 Score = 65.9 bits (159), Expect(2) = 8e-22
 Identities = 28/48 (58%), Positives = 39/48 (81%)
 Frame = +2

Query: 185 NLRLNGWPALSILGDNAQSERDWVRAEFKSDRSLIMIATDVDARGLGR 328
           +LR NGWPAL++ GD +Q ERDWV ++F+S +  +M+ATDV ARGLG+
Sbjct: 389 SLRGNGWPALAVHGDKSQQERDWVLSQFRSGKQPLMVATDVAARGLGK 436



 Score = 62.8 bits (151), Expect(2) = 8e-22
 Identities = 33/61 (54%), Positives = 42/61 (68%)
 Frame = +3

Query: 3   VIIGSSDLKANPSINQVIEVVTDGEMHNRLIKLLNELMDGSRILIFVETKKGCDHVTRQL 182
           V IG+ DL AN +I+Q IEV  + +   RL KLL ++M+G RILIF ETKK  D +TR L
Sbjct: 331 VTIGTLDLTANKNIDQTIEVCEESDKPLRLSKLLEKVMNGGRILIFTETKKKADELTRSL 390

Query: 183 R 185
           R
Sbjct: 391 R 391


>ref|XP_002955411.1| DEAD-box RNA helicase, ATP-dependent [Volvox carteri f.
           nagariensis] gi|300259253|gb|EFJ43482.1| DEAD-box RNA
           helicase, ATP-dependent [Volvox carteri f. nagariensis]
          Length = 535

 Score = 70.5 bits (171), Expect(2) = 1e-21
 Identities = 36/61 (59%), Positives = 45/61 (73%)
 Frame = +3

Query: 3   VIIGSSDLKANPSINQVIEVVTDGEMHNRLIKLLNELMDGSRILIFVETKKGCDHVTRQL 182
           VIIGS +LKAN +I Q++E+V     + RL KLL+  MDG RILIF ETK+GCD + RQL
Sbjct: 319 VIIGSPELKANHNIRQIVEMVEGYAKYPRLRKLLDTEMDGRRILIFCETKRGCDELVRQL 378

Query: 183 R 185
           R
Sbjct: 379 R 379



 Score = 57.8 bits (138), Expect(2) = 1e-21
 Identities = 28/52 (53%), Positives = 34/52 (65%)
 Frame = +2

Query: 167 CH*TAENLRLNGWPALSILGDNAQSERDWVRAEFKSDRSLIMIATDVDARGL 322
           C      LR +G+PAL + GD +Q ERDWV  EFK+    IM+ATDV ARGL
Sbjct: 371 CDELVRQLRTDGYPALGLHGDKSQQERDWVLQEFKNGTHPIMLATDVAARGL 422


>ref|XP_003366776.1| ATP-dependent RNA helicase Dbp2 [Trichinella spiralis]
           gi|316957983|gb|EFV47245.1| ATP-dependent RNA helicase
           Dbp2 [Trichinella spiralis]
          Length = 146

 Score = 65.9 bits (159), Expect(2) = 4e-21
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = +2

Query: 188 LRLNGWPALSILGDNAQSERDWVRAEFKSDRSLIMIATDVDARGLGRI 331
           LR  GWP LSI GD AQ ERDWV  EF++ +S I+IATDV ARGLG++
Sbjct: 91  LRQKGWPVLSIHGDKAQGERDWVLNEFRTGKSPIVIATDVAARGLGKL 138



 Score = 60.5 bits (145), Expect(2) = 4e-21
 Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 2/63 (3%)
 Frame = +3

Query: 3   VIIGSSDLKANPSINQVIEVVTDGEMHNRLIKLLNELMDGS--RILIFVETKKGCDHVTR 176
           V IGS  L AN +I QV+E+V++ E H RL+KLL E+   S  ++LIFVETK+  D +TR
Sbjct: 30  VNIGSLQLAANHNIEQVVEIVSEFEKHERLLKLLQEVTKDSDPKVLIFVETKRKADELTR 89

Query: 177 QLR 185
            LR
Sbjct: 90  WLR 92