BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012260
         (1820 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524216.1| zinc finger protein, putative [Ricinus commu...   416   e-114
ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like ...   400   e-109
ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like ...   390   e-106
ref|XP_003552863.1| PREDICTED: poly(A) RNA polymerase cid11-like...   373   e-101
ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidop...   373   e-101

>ref|XP_002524216.1| zinc finger protein, putative [Ricinus communis]
            gi|223536493|gb|EEF38140.1| zinc finger protein, putative
            [Ricinus communis]
          Length = 493

 Score =  416 bits (1070), Expect = e-114
 Identities = 233/482 (48%), Positives = 310/482 (64%), Gaps = 8/482 (1%)
 Frame = -3

Query: 1713 SALELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRW 1534
            S LE +L++ L VIKP  ED   R  +I + +  +AS+ESLRGATVEPFGSFVSNL++RW
Sbjct: 5    SVLEPILRDTLEVIKPLREDWAVRSKIIEELKDVIASIESLRGATVEPFGSFVSNLFTRW 64

Query: 1533 GDLDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNY 1354
            GDLDISI L +GS +S   KKRKQ +LR+  +AL+++G  R  QF+P+ARVPLL FES  
Sbjct: 65   GDLDISIMLANGSYISSAAKKRKQNVLREFHKALRQKGGWRRLQFVPNARVPLLKFESGR 124

Query: 1353 QSISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSL 1174
            Q+ISCD+SI NL GQ+KS FL W+ QID RFRDMVLLVKEWAK+ +IN+PKTGTLNSYSL
Sbjct: 125  QNISCDVSIDNLQGQIKSNFLFWLNQIDGRFRDMVLLVKEWAKAHNINNPKTGTLNSYSL 184

Query: 1173 SLLVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGN 994
            SLLVIFHFQTC PAILPPL+E+Y  N+  DLTGVR  AE +I++ C  NIAR+ ++K   
Sbjct: 185  SLLVIFHFQTCVPAILPPLKEIYPRNVVDDLTGVRTVAEERIKETCNANIARYMSDKYRA 244

Query: 993  INRSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQ 814
            +NRS+LSELFISFF KFS I+  A+   ICT+TGQW  I S   W+ K++ L I DPFEQ
Sbjct: 245  VNRSSLSELFISFFAKFSGISLKAADLGICTFTGQWLDIRSTMRWLPKTYALFIEDPFEQ 304

Query: 813  AENAARAVGKKELIMISEAFNET-SCMLLGNQEQSFLVTCLVRPQIRSQFS----PNKGN 649
             ENAARAV    L+ I+EAF  T   ++L NQ ++ L+  LVRP+I +  +     N   
Sbjct: 305  PENAARAVSAGNLVKIAEAFQTTYHKLVLANQNRTSLLGTLVRPEILNCIAGTPVRNLSY 364

Query: 648  STFRSGGFGHRADVSSTTRP-VRGQYQGMPLDSYSSPVYSQRQQFCSPVHPIENRFQNWQ 472
            ++        +   S  + P V+ Q+Q M  + +     +QRQ+        + R QN +
Sbjct: 365  TSLHYQSTHPQISKSMYSSPQVQHQFQNMRQEKHQKIFTAQRQEKHPHSSNSQYRVQNTR 424

Query: 471  STLHPSPVVSSQRHLSYSTVRPIQNH--YENRQMESPSLPNVYLPRXXXXXXXXXXXVWR 298
               HPS  ++ Q H S+     ++ H  Y   Q +  ++      +           +WR
Sbjct: 425  LEKHPS-YLAKQGHESHPENTRLERHPNYFAMQKQESNVNTSTRKKPAQYYHGQGQQLWR 483

Query: 297  PR 292
            P+
Sbjct: 484  PK 485


>ref|XP_002277771.2| PREDICTED: poly(A) RNA polymerase GLD2-like [Vitis vinifera]
            gi|296086183|emb|CBI31624.3| unnamed protein product
            [Vitis vinifera]
          Length = 453

 Score =  400 bits (1029), Expect = e-109
 Identities = 210/362 (58%), Positives = 264/362 (72%), Gaps = 4/362 (1%)
 Frame = -3

Query: 1713 SALELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRW 1534
            + LE++LK+IL VI P  ED   R  +I DFR AV SVESLRGATVEPFGSF+SNLY++W
Sbjct: 5    NVLEIVLKDILLVINPSREDWAIRNQLIADFRTAVDSVESLRGATVEPFGSFLSNLYTQW 64

Query: 1533 GDLDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNY 1354
            GDLDISIELP+G+ +S  GK+ KQ LL  +L AL+ +G  R  QFIP+ARVP++ FES +
Sbjct: 65   GDLDISIELPNGAYISSAGKRHKQTLLGHVLNALRSKGGWRKLQFIPNARVPIIKFESYH 124

Query: 1353 QSISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSL 1174
             +ISCD+SI+NL GQ+KSKFL WI+ ID RFRD+VLLVKEWA++ DIN+ KTGTLNSYSL
Sbjct: 125  PNISCDVSINNLKGQMKSKFLFWISGIDGRFRDLVLLVKEWARAHDINNSKTGTLNSYSL 184

Query: 1173 SLLVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGN 994
            SLLV+FH QTC PAILPPL+E+Y GN+A DL GVR   E QI++    NI RF+ ++   
Sbjct: 185  SLLVVFHLQTCRPAILPPLKEIYPGNVADDLIGVRAVVEGQIEETSAANINRFKRDRSRA 244

Query: 993  INRSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQ 814
             NRS+LSELFISF  KF  I + AS+  IC YTGQW  I S   WM +++ L + DPFEQ
Sbjct: 245  PNRSSLSELFISFLAKFVDITSRASEQGICPYTGQWVDIDSNMRWMPRTYELFVEDPFEQ 304

Query: 813  AENAARAVGKKELIMISEAFNETSCMLL-GNQEQSFLVTCLVRPQIRSQF---SPNKGNS 646
             EN AR V  ++L  ISEAF  T   L   NQ+Q  L+  LVRPQI +QF   +P++ +S
Sbjct: 305  PENTARGVRSRQLQRISEAFQTTHQRLTSANQDQHSLIDTLVRPQI-AQFIRRAPSRNSS 363

Query: 645  TF 640
             +
Sbjct: 364  AY 365


>ref|XP_004150639.1| PREDICTED: poly(A) RNA polymerase GLD2-like [Cucumis sativus]
            gi|449516431|ref|XP_004165250.1| PREDICTED: poly(A) RNA
            polymerase GLD2-like [Cucumis sativus]
          Length = 464

 Score =  390 bits (1001), Expect = e-106
 Identities = 224/477 (46%), Positives = 289/477 (60%), Gaps = 5/477 (1%)
 Frame = -3

Query: 1707 LELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRWGD 1528
            L+ ++K+IL V++P ++D  +R+ VIN+ R  V S+ESLRGAT+EPFGSFVSNL+SRWGD
Sbjct: 6    LDRVIKDILRVVEPLQDDWTARFQVINELRNVVQSIESLRGATIEPFGSFVSNLFSRWGD 65

Query: 1527 LDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNYQS 1348
            LD+S++L +GS  S  GKKRKQ LLRDI  A ++ G     Q IPHARVP+L  E    +
Sbjct: 66   LDLSVQLNNGSYTSTAGKKRKQTLLRDIQNASRKNGRWYKLQLIPHARVPILKIEHIQHN 125

Query: 1347 ISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSLSL 1168
            ISCDISI NLVGQ+KSK LLW+ +ID RF DMVLLVKEWAK+ DIN+ K GT NSYSLSL
Sbjct: 126  ISCDISIDNLVGQIKSKILLWVNEIDGRFHDMVLLVKEWAKAHDINNSKQGTFNSYSLSL 185

Query: 1167 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGNIN 988
            LVIFHFQTC PAI PPL+++Y GN+  +L GVR   E +I   C TNIARF++      N
Sbjct: 186  LVIFHFQTCSPAIFPPLRDIYPGNVVDNLKGVRAEVENEIARTCATNIARFKSR---TAN 242

Query: 987  RSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQAE 808
            RS+LSELF+SF  KFS I++ AS+  IC YTGQW  I S   W+ K++ + + DPFEQ E
Sbjct: 243  RSSLSELFVSFLAKFSDISSKASELGICPYTGQWLKIESNMRWLPKTYAIFVEDPFEQPE 302

Query: 807  NAARAVGKKELIMISEAFNETSCMLLG-NQEQSFLVTCLVRPQIRSQFSPNKGNSTFRSG 631
            N ARA+  ++L+ ISEAF  T   L    Q +S ++  L RPQI SQ   N       SG
Sbjct: 303  NTARAINARQLMRISEAFRMTHLRLTSVYQNRSSILNDLARPQI-SQLIINS------SG 355

Query: 630  GFGHRADVSSTTRPVRGQYQGMPLDSYSSPVYSQRQQFCSPVHPIENRFQN--WQSTLHP 457
                 A       P+R Q                + +   P   I+++FQN   +  +  
Sbjct: 356  SASAPAFNVENYTPIRPQV--------------HQARVMQPRPWIQHQFQNNIPRFNMGN 401

Query: 456  SPVVSSQR-HLSYSTVRPIQNHYENRQMESPSLPNVY-LPRXXXXXXXXXXXVWRPR 292
             P ++SQ  H   S   P+  H   +     S PNV  +              WRPR
Sbjct: 402  FPAINSQAPHAGTSQSHPLVQHKTPKTKRIVSSPNVLNVGEPSKTYSGQGQQKWRPR 458


>ref|XP_003552863.1| PREDICTED: poly(A) RNA polymerase cid11-like [Glycine max]
          Length = 415

 Score =  373 bits (958), Expect = e-101
 Identities = 188/363 (51%), Positives = 252/363 (69%), Gaps = 10/363 (2%)
 Frame = -3

Query: 1713 SALELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRW 1534
            S L++++ +IL V+ P +ED + R+ +IND R+ V SVESLRGATVEPFGSFVSNL++RW
Sbjct: 5    STLDIVVNDILRVVTPVQEDWEIRFAIINDLRSIVESVESLRGATVEPFGSFVSNLFTRW 64

Query: 1533 GDLDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNY 1354
            GDLDISIEL +G  +S  GKK+KQ  L D+L+AL+ +G   + QFI +ARVP+L F+S  
Sbjct: 65   GDLDISIELSNGLHISSAGKKQKQTFLGDVLKALRMKGGGSNLQFISNARVPILKFKSYR 124

Query: 1353 QSISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSL 1174
            Q +SCDISI+NL GQ+KSK LLWI +ID RFR MVLLVKEWAK+  IN+ K GT NSYSL
Sbjct: 125  QGVSCDISINNLPGQMKSKILLWINKIDGRFRHMVLLVKEWAKAHKINNSKAGTFNSYSL 184

Query: 1173 SLLVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGN 994
            SLLVIF+FQTC PAI PPL+++Y GN+  DL GVR  AE  I   C  NI RF +N+  +
Sbjct: 185  SLLVIFYFQTCIPAIFPPLKDIYPGNMVDDLIGVRSDAENLIAQTCDANINRFISNRARS 244

Query: 993  INRSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQ 814
            INR +++ELF+ F  KF+++++MA K  IC Y+G+WE I     W+ K++ + + DPFEQ
Sbjct: 245  INRKSVAELFVEFIGKFAKMDSMAVKMGICPYSGKWEQIEDNMIWLPKTYAIFVEDPFEQ 304

Query: 813  AENAARAVGKKELIMISEAF----------NETSCMLLGNQEQSFLVTCLVRPQIRSQFS 664
             +N AR+V   +L  I+EAF          N+    LL N   + ++ C+ RP     F 
Sbjct: 305  PQNTARSVSAGQLKKITEAFARTHDLLTSTNQNQISLLSNMAPAHVIRCITRPYGGGYFH 364

Query: 663  PNK 655
            P +
Sbjct: 365  PTQ 367


>ref|NP_181504.2| Nucleotidyltransferase family protein [Arabidopsis thaliana]
            gi|53850481|gb|AAU95417.1| At2g39740 [Arabidopsis
            thaliana] gi|55733735|gb|AAV59264.1| At2g39740
            [Arabidopsis thaliana] gi|330254623|gb|AEC09717.1|
            Nucleotidyltransferase family protein [Arabidopsis
            thaliana]
          Length = 511

 Score =  373 bits (958), Expect = e-101
 Identities = 221/505 (43%), Positives = 295/505 (58%), Gaps = 30/505 (5%)
 Frame = -3

Query: 1707 LELLLKEILSVIKPFEEDVQSRYYVINDFRAAVASVESLRGATVEPFGSFVSNLYSRWGD 1528
            L+  L+EIL VIKP   D  +R  VI+  R  + SVE LRGATV+PFGSFVSNL++RWGD
Sbjct: 7    LDPTLQEILQVIKPTRADRDTRITVIDQLRDVLQSVECLRGATVQPFGSFVSNLFTRWGD 66

Query: 1527 LDISIELPSGSLVSPTGKKRKQRLLRDILRALQRRGVVRSTQFIPHARVPLLIFESNYQS 1348
            LDIS++L SGS +  TGKK+KQ LL  +LRAL+  G+    QF+ HARVP+L   S +Q 
Sbjct: 67   LDISVDLFSGSSILFTGKKQKQTLLGHLLRALRASGLWYKLQFVIHARVPILKVVSGHQR 126

Query: 1347 ISCDISISNLVGQVKSKFLLWITQIDERFRDMVLLVKEWAKSQDINSPKTGTLNSYSLSL 1168
            ISCDISI NL G +KS+FL WI++ID RFRD+VLLVKEWAK+ +IN  KTGT NSYSLSL
Sbjct: 127  ISCDISIDNLDGLLKSRFLFWISEIDGRFRDLVLLVKEWAKAHNINDSKTGTFNSYSLSL 186

Query: 1167 LVIFHFQTCEPAILPPLQELYAGNIAHDLTGVRVTAERQIQDICLTNIARFRTNKMGNIN 988
            LVIFHFQTC PAILPPL+ +Y  +   DLTGVR TAE  I  +   NIARF++ +  ++N
Sbjct: 187  LVIFHFQTCVPAILPPLRVIYPKSAVDDLTGVRKTAEESIAQVTAANIARFKSERAKSVN 246

Query: 987  RSTLSELFISFFNKFSRINTMASKYAICTYTGQWEPITSKESWMAKSHPLVIGDPFEQAE 808
            RS+LSEL +SFF KFS IN  A ++ +C +TG+WE I+S  +W+ K++ L + DPFEQ  
Sbjct: 247  RSSLSELLVSFFAKFSDINVKAQEFGVCPFTGRWETISSNTTWLPKTYSLFVEDPFEQPV 306

Query: 807  NAARAVGKKELIMISEAFNETSCMLLGNQEQSFLVTCLVRPQIR-SQFSPNKGNSTFRSG 631
            NAAR+V ++ L  I++ F  TS  L+    ++ ++  L    I+ S +      S   + 
Sbjct: 307  NAARSVSRRNLDRIAQVFQITSRRLVSECNRNSIIGILTGQHIQESLYRTISLPSQHHAN 366

Query: 630  GFGHRADVSSTTRPVRGQYQGMPLDSYSSP--------VYSQRQQFCSPVHPIE------ 493
            G  +  ++    RP   Q Q     SY++P          S+ QQ  +  +P        
Sbjct: 367  GMHNVRNLHGQARPQNQQMQQNWSQSYNTPNPPHWPPLTQSRPQQNWTQNNPRNLQGQPP 426

Query: 492  NRFQNW-----QSTLHPSPVVSSQRHLSYSTVRPIQN---------HYENRQMESPSLPN 355
             + Q W       T   SP  S  R L  ++    QN         H        P+  N
Sbjct: 427  VQGQTWPVITQTQTQQKSPYKSGNRPLKNTSAGSSQNQGHIGKPSGHMNGVNSARPAYTN 486

Query: 354  -VYLPRXXXXXXXXXXXVWRPRHSE 283
             V   R           +WRPRH +
Sbjct: 487  GVNSARPPSKIPSQGGQIWRPRHEQ 511