BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00012063
         (3082 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    66   5e-24
ref|XP_003596392.1| hypothetical protein MTR_2g076760 [Medicago ...    90   1e-21
emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulga...    65   1e-20
ref|XP_003599061.1| hypothetical protein MTR_3g027260 [Medicago ...    90   1e-20
ref|XP_003626631.1| hypothetical protein MTR_8g005090 [Medicago ...    92   2e-20

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score = 65.9 bits (159), Expect(3) = 5e-24
 Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 13/230 (5%)
 Frame = +1

Query: 1585 MKILFWNLRGIANEKAQDRLSRLVNKWDPEIIGIAGLMINTDSXXXXXXXXXXXXTAEIT 1764
            M+IL WN +G+ N      L  +   + PE+I +       +                + 
Sbjct: 1    MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60

Query: 1765 EFQTSG----YYGSAIYHNPLS*ASEINTFQWKWREMSSHW-CMLNQATYTEGHYGRIWL 1929
                SG     +  ++    L     +      W++   +  C+  +    E   G +W 
Sbjct: 61   PIGKSGGLALMWKDSVQIKVLQSDKRLIDALLIWQDKEFYLTCIYGEPVQAER--GELWE 118

Query: 1930 VLI--------P*TSLGDFNAYLISPTEKMGGLTPSNTAMRDFREAIDQNHLIEAPSTGF 2085
             L         P    GDFN  L+ P+EK+GG     ++  +FR+ ++   L E   +G+
Sbjct: 119  RLTRLGLSRSGPWMLTGDFNE-LVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGY 177

Query: 2086 KFTWWNKQLGVNKVLGKLDRAFVNADWTSSFASWRYTALGRICSDHSPLV 2235
            +F+W+  +     V  +LDR   N  W   F   + T L +ICSDHSPL+
Sbjct: 178  QFSWYGNR-NDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLI 226



 Score = 51.2 bits (121), Expect(3) = 5e-24
 Identities = 25/63 (39%), Positives = 37/63 (58%)
 Frame = +2

Query: 2777 YTLDLDLINLMP*TITQAENGALIQTPTPDEIKRAVFYLNPDSAPGPDGFNGCFFQYCWS 2956
            YT++ +L NL P  ++   N  L+   T +E++RA F +NP   PGPDG NG  +Q  W 
Sbjct: 404  YTVE-ELENLTP-LVSDQMNNNLLAPITKEEVQRATFSINPHKCPGPDGMNGFLYQQFWE 461

Query: 2957 IVG 2965
             +G
Sbjct: 462  TMG 464



 Score = 43.1 bits (100), Expect(3) = 5e-24
 Identities = 32/156 (20%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
 Frame = +3

Query: 2268 APFRFFKMWTTHPGFMELVEQSWGESITGHSIFILTQXXXXXXXXXXHWNKHTFGHLGTK 2447
            A F++ K W    GF +L+   W +  T  +  ++ +           W +         
Sbjct: 238  AGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMM-EKIASCRREISKWKR--------- 287

Query: 2448 IATKTKLLEDLQVNFELDSSNEALA---GMVLQ*ESKVENLLQQEEMLWKQKSRAKMDLE 2618
            ++  +  +   ++ F+LD++ + +      + + + ++      EE  W++KSR      
Sbjct: 288  VSKPSSAVRIQELQFKLDAATKQIPFDRRELARLKKELSQEYNNEEQFWQEKSRIMWMRN 347

Query: 2619 YDRNAKYYHALVNNTVNHY*VQELGCGYS*STGRDW 2726
             DRN KY+HA   N      +Q+L        GR+W
Sbjct: 348  GDRNTKYFHAATKNRRAQNRIQKL----IDEEGREW 379


>ref|XP_003596392.1| hypothetical protein MTR_2g076760 [Medicago truncatula]
           gi|355485440|gb|AES66643.1| hypothetical protein
           MTR_2g076760 [Medicago truncatula]
          Length = 513

 Score = 89.7 bits (221), Expect(2) = 1e-21
 Identities = 47/117 (40%), Positives = 70/117 (59%)
 Frame = +2

Query: 374 LSQWSTYFCPDSQRQSHALVWIRLPELGQEY*DPEALMSIARGVGYLMLIDDKILRREYG 553
           L +W+  F    QR +HA VWIRL EL QEY     L  I+  +G  ++ID+   +R YG
Sbjct: 150 LFEWTKDFNMHKQRNTHAQVWIRLMELPQEYWMDRTLREISSAIGTPLIIDNATTKRLYG 209

Query: 554 YFARILVDINLSKAIPDQIYVKTKNVNFWQTVEVGKLPNMCTHCKIVGHLVTECRKL 724
           ++ARILVD++ ++ +  +I V+ +   F   V    LP+ C+HC+ +GH VT CR L
Sbjct: 210 HYARILVDMDFARKMFHEITVEREGYAFNVEVAYEWLPDFCSHCQNIGHDVTVCRWL 266



 Score = 42.4 bits (98), Expect(2) = 1e-21
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
 Frame = +3

Query: 204 LPEPEKMGEFPAITIPQQAYERGLNYCKHCLIGQVDLQK----IPIERVCMLAEEKWQLS 371
           LP P   GE  +ITI QQ YE+GL  CKH L G++ L K       + + +  +++W+ +
Sbjct: 50  LPTPLIRGESVSITITQQIYEKGLEVCKHNLRGRLVLSKGDKPYTTKDIHLKLQKQWKTT 109

Query: 372 G 374
           G
Sbjct: 110 G 110


>emb|CCA66188.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1381

 Score = 65.5 bits (158), Expect(2) = 1e-20
 Identities = 44/138 (31%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
 Frame = +3

Query: 2271 PFRFFKMWTTHPGFMELVEQSWGESITGHSIFILTQXXXXXXXXXXHWNKHTFGHLGTKI 2450
            PFRF   W +HPG +++++  W    +G+    LT            WN   FGH+   I
Sbjct: 238  PFRFQNCWLSHPGCLQIIKDVWASHTSGN----LTDKLKETKKRLKIWNSSEFGHIDRNI 293

Query: 2451 ATKTKLLEDLQVNFELDSSNEALAGMVLQ*ESKVENL---------LQQEEMLWKQKSRA 2603
                  LED   N +L S+     G  LQ E   E           L+++E  W Q SRA
Sbjct: 294  EE----LEDRIHNLDLISN-----GRDLQLEELAERRSSQMELWVWLRRKEAFWAQNSRA 344

Query: 2604 KMDLEYDRNAKYYHALVN 2657
            K   E D+N KY+H L +
Sbjct: 345  KWIKEGDKNTKYFHTLAS 362



 Score = 63.5 bits (153), Expect(2) = 1e-20
 Identities = 58/240 (24%), Positives = 101/240 (42%), Gaps = 23/240 (9%)
 Frame = +1

Query: 1585 MKILFWNLRGIANEKAQDRLSRLVNKWDPEIIGIAGLMINTDSXXXXXXXXXXXXTAEIT 1764
            M I+ WN+RG+     +  L +L+++ DP+ I     +  T               ++  
Sbjct: 1    MIIISWNIRGLNARVKKSSLRKLISRHDPKFI----FLQETKMESLNPKTIRSIWNSDDI 56

Query: 1765 EFQTSGYYGSAIYHNPLS*ASEINTFQWKWREMSSHWCMLNQATYTEGHYG--------- 1917
            ++      G++     L    +I+ F     +  ++W  LN    ++   G         
Sbjct: 57   DWLFIPSIGNS---GGLLSMWKIDYFSLTSHKSENNWIALNGKIPSKNFQGVLVNVYNPC 113

Query: 1918 ------RIWLVLI--------P*TSLGDFNAYLISPTEKMGGLTPSNTAMRDFREAIDQN 2055
                  ++W  +         P   +GDFN  L  P+++  G++ S   + DF+  I Q 
Sbjct: 114  CRVSRSKVWTSISDYWAESQSPMLMVGDFNEVL-DPSDRGSGIS-SQLGVLDFKNFIQQT 171

Query: 2056 HLIEAPSTGFKFTWWNKQLGVNKVLGKLDRAFVNADWTSSFASWRYTALGRICSDHSPLV 2235
            HL+E  ++   FTW++ Q        KLDR  VN +W S F S + + L R  SDH PL+
Sbjct: 172  HLMEISASDGWFTWFSGQ-----AKSKLDRLLVNPEWVSLFPSLQVSILRRNLSDHCPLL 226


>ref|XP_003599061.1| hypothetical protein MTR_3g027260 [Medicago truncatula]
           gi|355488109|gb|AES69312.1| hypothetical protein
           MTR_3g027260 [Medicago truncatula]
          Length = 572

 Score = 89.7 bits (221), Expect(2) = 1e-20
 Identities = 49/131 (37%), Positives = 77/131 (58%), Gaps = 4/131 (3%)
 Frame = +2

Query: 374 LSQWSTYFCPDSQRQSHALVWIRLPELGQEY*DPEALMSIARGVGYLMLIDDKILRREYG 553
           L +WS  F   +QR +HA VWIRL  L QEY     L  IA  +G  +LID+   +R +G
Sbjct: 157 LFEWSKDFNLYTQRSTHAQVWIRLMALPQEYWMDRTLREIASAIGTPLLIDNATSKRLFG 216

Query: 554 YFARILVDINLSKAIPDQIYVKTKNVNFWQTVEVGKLPNMCTHCKIVGHLVTECR----K 721
           ++ARILVD++ ++ +  +I V+ +   F   V   ++P+ CT+CK +GH ++ CR    +
Sbjct: 217 HYARILVDMDFTRKLFYEIVVEREGFAFSVEVVYDRMPDFCTNCKNIGHHISVCRWIHPR 276

Query: 722 LKGVMNLNKEK 754
            +   N+ KEK
Sbjct: 277 KENENNIEKEK 287



 Score = 38.9 bits (89), Expect(2) = 1e-20
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
 Frame = +3

Query: 201 ELPEPEKMGEFPAITIPQQAYERGLNYCKHCLIGQVDLQK----IPIERVCMLAEEKWQL 368
           +LP+P   GE  +I I Q  YE+G+ +CK  L G++ L K     P   + +  ++ W+ 
Sbjct: 56  DLPQPSIRGETLSINISQGMYEKGMAFCKRNLRGRLVLNKGDKPYPKRDIELKLQKLWKT 115

Query: 369 SG 374
           SG
Sbjct: 116 SG 117


>ref|XP_003626631.1| hypothetical protein MTR_8g005090 [Medicago truncatula]
           gi|92896032|gb|ABE93038.1| N-6 Adenine-specific DNA
           methylase [Medicago truncatula]
           gi|355520653|gb|AET01107.1| hypothetical protein
           MTR_8g005090 [Medicago truncatula]
          Length = 532

 Score = 92.0 bits (227), Expect(2) = 2e-20
 Identities = 58/163 (35%), Positives = 87/163 (53%), Gaps = 10/163 (6%)
 Frame = +2

Query: 311 FAEDSNRTCLYAGRREV---AAFWLSQWSTYFCPDSQRQSHALVWIRLPELGQEY*DPEA 481
           FA +S+   ++A    +       L +W   F    Q+ +HA VWIR  EL QEY     
Sbjct: 132 FASESDMRYVWANGTTILKPGVLRLFEWRKDFNMHRQKNTHAQVWIRWIELPQEYSMDRT 191

Query: 482 LMSIARGVGYLMLIDDKILRREYGYFARILVDINLSKAIPDQIYVKTKNVNFWQTVEVGK 661
           L  I+  VG  +LID+   +R YG++ RILVD++ SK +  +I V+ +  +F   V    
Sbjct: 192 LREISSAVGTPLLIDNATSKRLYGHYTRILVDMDCSKKLYYEILVEREGSSFPVEVVYEW 251

Query: 662 LPNMCTHCKIVGHLVTECRKL-------KGVMNLNKEKAKDAV 769
           +P+ CTHC+ +GHLVT CR L       + V  ++K K K+ V
Sbjct: 252 MPDYCTHCQSLGHLVTNCRWLYPKKHVQEPVAIIDKGKTKEPV 294



 Score = 36.2 bits (82), Expect(2) = 2e-20
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 204 LPEPEKMGEFPAITIPQQAYERGLNYCKHCLIGQVDLQK 320
           LP+P   G+  +I I Q  YE+G++YCK  L G++ L K
Sbjct: 56  LPQPSIKGKQLSIKISQPIYEKGVDYCKRNLRGRLILNK 94