BLASTX nr result

ID: Coptis24_contig00011843 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011843
         (854 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN77684.1| hypothetical protein VITISV_040766 [Vitis vinifera]   228   1e-57
ref|XP_002283854.1| PREDICTED: transportin-3 [Vitis vinifera] gi...   227   2e-57
gb|AAX95769.2| hypothetical protein LES1_20t00006 [Solanum lycop...   220   4e-55
ref|XP_002511481.1| transportin, putative [Ricinus communis] gi|...   217   2e-54
ref|XP_002318009.1| predicted protein [Populus trichocarpa] gi|2...   216   4e-54

>emb|CAN77684.1| hypothetical protein VITISV_040766 [Vitis vinifera]
          Length = 798

 Score =  228 bits (581), Expect = 1e-57
 Identities = 113/157 (71%), Positives = 135/157 (85%)
 Frame = +1

Query: 1    GITIQHREACSSILTFLSDVFDLGNSTLGEQYKSVRDNVVVPRGPSLTRILIASLTGALP 180
            G+T+QHREA +SILTFLSD+FDL  ++ GEQY+S+RD V++PRG S+TRILIA LTGALP
Sbjct: 641  GVTVQHREASNSILTFLSDIFDLAKTSPGEQYQSIRDTVIIPRGASITRILIACLTGALP 700

Query: 181  RSRLEAVTCSLLSLTRAYDFKSLEWAKQSISLIPLAAVTEVEKTRFLQSLSEAASGADSS 360
             SRLE VT +LL+LTRAY  K++EWAK  ISL+PL AVTEVE+TRFLQ+LS  A+GAD +
Sbjct: 701  SSRLETVTYALLALTRAYGMKAVEWAKDCISLVPLTAVTEVERTRFLQTLSNVATGADIN 760

Query: 361  ALTVAVEELSDVCRRNRAVQEIVHGALRPLELNLAPV 471
             LTV++EELSDVCRRNR VQEIV GALRP ELNLAPV
Sbjct: 761  TLTVSMEELSDVCRRNRTVQEIVQGALRPXELNLAPV 797


>ref|XP_002283854.1| PREDICTED: transportin-3 [Vitis vinifera]
            gi|297733855|emb|CBI15102.3| unnamed protein product
            [Vitis vinifera]
          Length = 960

 Score =  227 bits (579), Expect = 2e-57
 Identities = 113/157 (71%), Positives = 135/157 (85%)
 Frame = +1

Query: 1    GITIQHREACSSILTFLSDVFDLGNSTLGEQYKSVRDNVVVPRGPSLTRILIASLTGALP 180
            G+T+QHREA +SILTFLSD+FDL  ++ GEQY+S+RD V++PRG S+TRILIA LTGALP
Sbjct: 803  GVTVQHREASNSILTFLSDIFDLAKTSPGEQYQSIRDTVIIPRGASITRILIACLTGALP 862

Query: 181  RSRLEAVTCSLLSLTRAYDFKSLEWAKQSISLIPLAAVTEVEKTRFLQSLSEAASGADSS 360
             SRLE VT +LL+LTRAY  K++EWAK  ISL+PL AVTEVE+TRFLQ+LS  A+GAD +
Sbjct: 863  SSRLETVTYALLALTRAYGMKAVEWAKDCISLVPLTAVTEVERTRFLQTLSNVATGADIN 922

Query: 361  ALTVAVEELSDVCRRNRAVQEIVHGALRPLELNLAPV 471
             LTV++EELSDVCRRNR VQEIV GALRP ELNLAPV
Sbjct: 923  TLTVSMEELSDVCRRNRTVQEIVQGALRPHELNLAPV 959


>gb|AAX95769.2| hypothetical protein LES1_20t00006 [Solanum lycopersicum]
          Length = 618

 Score =  220 bits (560), Expect = 4e-55
 Identities = 106/157 (67%), Positives = 134/157 (85%)
 Frame = +1

Query: 1   GITIQHREACSSILTFLSDVFDLGNSTLGEQYKSVRDNVVVPRGPSLTRILIASLTGALP 180
           GIT+QHREAC+SIL F+SD+FDL NST GE   S+RD+V++PRGP++TRIL+A LTGALP
Sbjct: 461 GITVQHREACNSILNFVSDIFDLSNSTNGESCLSIRDSVIIPRGPTITRILVACLTGALP 520

Query: 181 RSRLEAVTCSLLSLTRAYDFKSLEWAKQSISLIPLAAVTEVEKTRFLQSLSEAASGADSS 360
            SRLE VT +LL+LTRAY  K+LEWAK+ +SLIP  AVTE+E+TRFLQ+LS+AASGA+ +
Sbjct: 521 SSRLETVTYALLALTRAYGLKALEWAKECVSLIPSTAVTELERTRFLQALSDAASGANMN 580

Query: 361 ALTVAVEELSDVCRRNRAVQEIVHGALRPLELNLAPV 471
            L V ++E+S+VCRRNR VQEIV GALRPL+LN+  V
Sbjct: 581 GLVVPIDEISEVCRRNRTVQEIVQGALRPLDLNIVAV 617


>ref|XP_002511481.1| transportin, putative [Ricinus communis] gi|223550596|gb|EEF52083.1|
            transportin, putative [Ricinus communis]
          Length = 967

 Score =  217 bits (553), Expect = 2e-54
 Identities = 109/157 (69%), Positives = 131/157 (83%)
 Frame = +1

Query: 1    GITIQHREACSSILTFLSDVFDLGNSTLGEQYKSVRDNVVVPRGPSLTRILIASLTGALP 180
            GIT+QHREA +SILTFLSD+FDL  S++GE Y SVRD+V++PRG S+TRIL+ASLTGALP
Sbjct: 810  GITVQHREASNSILTFLSDIFDLAKSSVGEHYLSVRDSVIIPRGASITRILVASLTGALP 869

Query: 181  RSRLEAVTCSLLSLTRAYDFKSLEWAKQSISLIPLAAVTEVEKTRFLQSLSEAASGADSS 360
             SR+E V  +LL++TR Y  +++EWA +SISLIPL AVTEVE+ RF Q+LS+AASG D +
Sbjct: 870  SSRIETVAYALLAVTRTYGARAVEWAMESISLIPLTAVTEVERARFFQALSDAASGIDVN 929

Query: 361  ALTVAVEELSDVCRRNRAVQEIVHGALRPLELNLAPV 471
            AL   VEELSDVCRRNR VQEIV GALRPLELNL  V
Sbjct: 930  ALMAPVEELSDVCRRNRTVQEIVQGALRPLELNLVTV 966


>ref|XP_002318009.1| predicted protein [Populus trichocarpa] gi|222858682|gb|EEE96229.1|
           predicted protein [Populus trichocarpa]
          Length = 554

 Score =  216 bits (551), Expect = 4e-54
 Identities = 107/157 (68%), Positives = 131/157 (83%)
 Frame = +1

Query: 1   GITIQHREACSSILTFLSDVFDLGNSTLGEQYKSVRDNVVVPRGPSLTRILIASLTGALP 180
           G+T+QHREA +SILTFLSD+FDL  S++GEQY ++RD+V++PRG S+TRIL+ASLTGALP
Sbjct: 397 GVTVQHREASNSILTFLSDIFDLAKSSMGEQYLTIRDSVIIPRGSSITRILVASLTGALP 456

Query: 181 RSRLEAVTCSLLSLTRAYDFKSLEWAKQSISLIPLAAVTEVEKTRFLQSLSEAASGADSS 360
            SRLE VT +LL+LTRAY   +LEWA++S+SLIP   VTEVE+T+  Q+L++AASG D  
Sbjct: 457 SSRLETVTYALLALTRAYGASALEWARESVSLIPSTVVTEVEQTKIFQALTDAASGVDIK 516

Query: 361 ALTVAVEELSDVCRRNRAVQEIVHGALRPLELNLAPV 471
            L  AVEELSDVCRRNR VQEIV GALRPLELNL  V
Sbjct: 517 TLMGAVEELSDVCRRNRTVQEIVQGALRPLELNLVTV 553


Top