BLASTX nr result
ID: Coptis24_contig00011767
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00011767
(1381 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 172 1e-40
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 170 7e-40
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin... 163 9e-38
emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera] 152 2e-34
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 147 5e-33
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 172 bits (437), Expect = 1e-40
Identities = 126/385 (32%), Positives = 190/385 (49%), Gaps = 43/385 (11%)
Frame = +1
Query: 13 DYIRFGVVCRSWQSVYIENMRQYCPPPQLPFLMLTTKLDSDDEDENQTPSFYSLSERRVC 192
DY+RF VC +W++ + P QLP+LML + + F+SLS +
Sbjct: 24 DYVRFRAVCHNWRASVPKTPHHL--PTQLPWLMLP-----QSQPHHTHRPFFSLSLNKFH 76
Query: 193 NIRVT-LPHNTVCRGSSHGWLVMTDQNYRDVRLFNPFLVVNNEIKLP------------- 330
+++ H RGSSHGWL++ D+ ++ L NP + +++ LP
Sbjct: 77 FLQLPEASHRRRRRGSSHGWLLILDEA-PEIFLLNP--LTRSKVHLPPLSTFPNVVRFNF 133
Query: 331 -----EFKLDTTC---------------LYKVVLSANPASNANCVVMAVYGGCSRLAFFM 450
E+ L T+ + K +LS++PA+ ++ + + + LA
Sbjct: 134 ADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPANGSDFIAVVILNQTGDLALCR 193
Query: 451 PGDTTWTCDISLDGYHLSDYDCVFENVIWYKDLLYVVTWGGTLFACDVYRPQPQLSRVAA 630
D +WT L D E+VI+++ L Y V G++ CDV P++S +
Sbjct: 194 KSDDSWT--------FLEDAQSYSEDVIFHRGLFYAVNKYGSIAVCDVSGSSPRVS-IIE 244
Query: 631 SPKARFPSMRIYLVESSGDLLQVRRRLD--------SKGSTYFTAEFEIFKLDSMAFKWD 786
P+ +F YLVES +LL V R LD Y T F++ +LDS A +W+
Sbjct: 245 MPQ-QFGGDLQYLVESGEELLLVTRYLDLTYDVEXDQTSLIYRTTRFQVCRLDSKAPRWE 303
Query: 787 EVKSLCGRALFLGDNSSICLSPSDFPGCKTNCIYFTDDYFE-VHDVAGPDVFYDTGVFSL 963
V SL RALFLG+N S+ LS DFPGCK NCIY+TDDY E +D G + D G+F+L
Sbjct: 304 VVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGE--QDLGIFNL 361
Query: 964 EDGSIERHCPIQTNMKFPPPIWIEP 1038
EDGSIE +++PPP+W+ P
Sbjct: 362 EDGSIEPLPCSHFRIRWPPPLWVTP 386
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 170 bits (431), Expect = 7e-40
Identities = 125/385 (32%), Positives = 189/385 (49%), Gaps = 43/385 (11%)
Frame = +1
Query: 13 DYIRFGVVCRSWQSVYIENMRQYCPPPQLPFLMLTTKLDSDDEDENQTPSFYSLSERRVC 192
DY+RF VC +W++ + P QLP+LML + + F+SLS +
Sbjct: 24 DYVRFRAVCHNWRASVPKTPHHL--PTQLPWLMLP-----QSQPHHTHRPFFSLSLNKFH 76
Query: 193 NIRVT-LPHNTVCRGSSHGWLVMTDQNYRDVRLFNPFLVVNNEIKLP------------- 330
+++ H RGSSHGWL++ D+ ++ L NP + +++ LP
Sbjct: 77 FLQLPEASHRRRRRGSSHGWLLILDEA-PEIFLLNP--LTRSKVHLPPLSTFPNVVRFNF 133
Query: 331 -----EFKLDTTC---------------LYKVVLSANPASNANCVVMAVYGGCSRLAFFM 450
E+ L T+ + K +LS++PA+ ++ + + + LA
Sbjct: 134 ADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPANGSDFIAVVILNQTGDLALCR 193
Query: 451 PGDTTWTCDISLDGYHLSDYDCVFENVIWYKDLLYVVTWGGTLFACDVYRPQPQLSRVAA 630
D +WT L D E+VI+++ L Y V G++ CDV P++S +
Sbjct: 194 KSDDSWT--------FLEDAQSYAEDVIFHRGLFYAVNKYGSIAVCDVSGSSPRVS-IIE 244
Query: 631 SPKARFPSMRIYLVESSGDLLQVRRRLD--------SKGSTYFTAEFEIFKLDSMAFKWD 786
P+ +F YLVES +LL V R LD Y T F++ +LD A +W+
Sbjct: 245 MPQ-QFGGDLQYLVESGEELLLVTRYLDLTYDVEPDQTSLIYRTTRFQVCRLDLKAPRWE 303
Query: 787 EVKSLCGRALFLGDNSSICLSPSDFPGCKTNCIYFTDDYFE-VHDVAGPDVFYDTGVFSL 963
V SL RALFLG+N S+ LS DFPGCK NCIY+TDDY E +D G + D G+F+L
Sbjct: 304 VVSSLGDRALFLGENLSLSLSSVDFPGCKGNCIYYTDDYSEDNYDGIGGE--QDLGIFNL 361
Query: 964 EDGSIERHCPIQTNMKFPPPIWIEP 1038
EDGSIE +++PPP+W+ P
Sbjct: 362 EDGSIEPLPCSHFRIRWPPPLWVTP 386
>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
Length = 393
Score = 163 bits (413), Expect = 9e-38
Identities = 133/390 (34%), Positives = 184/390 (47%), Gaps = 48/390 (12%)
Frame = +1
Query: 13 DYIRFGVVCRSWQSVYIENMRQYCPPPQLPFLMLTTKLDSDDEDENQTPSFYSLSERRVC 192
DY+RF VCRSW+S + PPQLP+LML+ + +F+ LS +
Sbjct: 25 DYLRFRSVCRSWRSSVPKIPLHL--PPQLPWLMLSRR------------AFFDLSLNKTH 70
Query: 193 NIRVTLPHNTVCRGSSHGWLVMTDQNYRDVRLFNP------------------------- 297
+ H T GSSHGWLVM D+ + +RL NP
Sbjct: 71 LLNPQPSHRTRICGSSHGWLVMLDETPQ-IRLLNPLTRATRPLPPLHAFPNVVAFDHANV 129
Query: 298 ---FLVVNNEIKLPEFKLDTTC---LYKVVLSANPASNANCVVMAVYGGCSRLAFFMPGD 459
+L+ N L F L C L KVVLSA+P N + +A+ G + LAF G
Sbjct: 130 GREYLIQNPYGGLYAFNLRQMCNSFLGKVVLSASPTLNDDFAALAIVGQ-NNLAFCRNGY 188
Query: 460 TTWTCDISLDGYHLSDYDCVFENVIWYKDLLYVVTWGGTLFACDVYRP--QPQLSRVAAS 633
+W I L+G + +C +E+V+ Y L + V+ GGT+ CD P++S + +
Sbjct: 189 DSW---IFLNGEE-EEMNC-WEDVVNYNGLFFAVSKGGTIAVCDAGEGCFPPRVSIIQTT 243
Query: 634 PKARFPSMRIYLVESSGDLLQVRRRLDSKGS---------TYFTAEFEIFKLDSMAFKWD 786
F Y V S+GD+L + R LD S Y T FE+FK++ W
Sbjct: 244 TPFGFAGDIHYAVFSAGDMLLLIRVLDQDFSDHAGEESDLVYRTVGFEVFKMNWGLLTWQ 303
Query: 787 EVKSLCGRALFLGDNSSICLSPSDFPGCKTNCIYFTDDYFEVH--DVAGPDVFYDTGVFS 960
V++L R LF+G NSS+ SDF GC +CIYFTDDY E + D G +D GVF
Sbjct: 304 RVETLGERVLFVGGNSSLSFCASDFVGCSADCIYFTDDYSESNDDDACGK---HDLGVFR 360
Query: 961 LEDGSIERHCPIQTN----MKFPPPIWIEP 1038
L D SIE N +++P PIW+ P
Sbjct: 361 LRDKSIEPLPCFNQNSCSRLRWPLPIWVSP 390
>emb|CAN67605.1| hypothetical protein VITISV_030993 [Vitis vinifera]
Length = 1290
Score = 152 bits (385), Expect = 2e-34
Identities = 116/373 (31%), Positives = 177/373 (47%), Gaps = 27/373 (7%)
Frame = +1
Query: 4 NIKDYIRFGVVCRSWQSVYIENMRQYCPPPQLPFLMLTTKLDSDDEDENQTPSFYSLSER 183
+++DY+RFG VC+SW S++ E+ CP + P+LML K + ++ FYS
Sbjct: 939 SVEDYVRFGGVCKSWYSIF-EDKECCCPSSKSPWLMLAEK------ENSEIRGFYSPLSG 991
Query: 184 RVCNIRVTLPHNTVCRGSSHGWLVMTDQNYRDVRLFNPFLVVNNEIKLPEFK-------- 339
+V IR+ C GS +GWLV + D+ L NP V +I LP +
Sbjct: 992 KVYEIRLPEVVGKWCWGSPYGWLVTIGTDL-DMCLLNPLTRV--QILLPSLRACPNLNTL 1048
Query: 340 LDTTC---------LYKVVLSANPASNANCVVMAVYGGCSRLAFFMPGDTTWTCDISLDG 492
+D++ +YK VLS+ P+S +C VM +Y RLAF PG TWT S G
Sbjct: 1049 IDSSTQGSRSKDIFIYKAVLSSAPSS-PDCAVMIIYSDYGRLAFTKPGHQTWTLLESESG 1107
Query: 493 YHLSDYDCVFENVIWYKDLLYVVTWGGTLFACDVYRPQPQLSRVAASPKAR----FPSMR 660
+++I++ V ++ CD+ Q + R AA+P +
Sbjct: 1108 --------PVDDIIYFNGSFLAVNLSWEVWICDISGSQLKTIRFAAAPALQDVDEIEYEA 1159
Query: 661 IYLVESSGDLLQVRRRLDSKGSTYF----TAEFEIFKLDSMAFKWDEVKSLCGRALFLGD 828
YLVES G++ V R L T F + KLD +W+EV++L + FLG+
Sbjct: 1160 KYLVESGGEIYMVTRNLYDTARRDIPYMRTWTFSVLKLDMCNKRWEEVENLDHCSFFLGN 1219
Query: 829 NSSICLSPSDFPGCKTNCIYFTDDYFEVHDVAGPDVFYDTGVFSLEDGSIERHCPI--QT 1002
N S SD+P + N IYFTDDY ++ +D G+++ ++ IE H P+
Sbjct: 1220 NHSFSTWASDYPEFRKNSIYFTDDYCGFLNIPRN---FDMGIYNFQNTQIE-HYPVGHDA 1275
Query: 1003 NMKFPPPIWIEPT 1041
F P+WI P+
Sbjct: 1276 LSMFSAPLWIRPS 1288
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 147 bits (372), Expect = 5e-33
Identities = 119/387 (30%), Positives = 179/387 (46%), Gaps = 45/387 (11%)
Frame = +1
Query: 13 DYIRFGVVCRSWQSVYIENMRQYCPPPQLPFLMLTTKLDSDDEDENQTPSFYSLSERRVC 192
DY+ F VC +W+S + PPQLP+L+L +++ +F++LS +
Sbjct: 25 DYLHFQAVCHAWKSSIPKTPNHL--PPQLPWLLLP----QSQSNQSSYRAFFNLSTYKFH 78
Query: 193 NIRVT-LPHNTVCRGSSHGWLVMTDQNYRDVRLFNP---------------------FLV 306
++ + H GSSHGWL++ D + + + NP +
Sbjct: 79 SLNLPEASHRKKHCGSSHGWLIILDDS-PSILVINPLTRRKIHLPAISSFPNVVSFDYAN 137
Query: 307 VNNEIKL--PEFKLDTTCLY--------KVVLSANPASNAN--CVVMAVYGGCSRLAFFM 450
V E L P+ + +T L KVV+S++P V MA+ LA+
Sbjct: 138 VGREYLLVNPQGERNTASLRQMRDGFIKKVVMSSSPLEKKGDFFVAMAILCSTGDLAYCK 197
Query: 451 PGDTTWTCDISLDGYHLSDYDCVFENVIWYKDLLYVVTWGGTLFACDVYRPQPQLSRVAA 630
GD W + + E+VI++ L Y V G + CDV P++S +
Sbjct: 198 NGDECWNI--------VENSRSFSEDVIYFNGLFYAVNKAGQIVVCDVNGNSPKVSFIE- 248
Query: 631 SPKARFPSMRIYLVESSGDLLQVRRRLDSKGS----TYFTAEFEIFKLDSMAFKWDEVKS 798
+P+ M+ YLV S LL V R LD Y TA FE+FKLD +W+ V S
Sbjct: 249 TPRQIGGDMQ-YLVSSGDGLLLVTRYLDLDVEFDIFIYKTARFEVFKLDLNGPRWERVTS 307
Query: 799 LCGRALFLGDNSSICLSPSDFPGCKTNCIYFTDDYFEVHDVAGPDVFYDTGVFSLEDGSI 978
L LF+G+NSS+ LS S GC +CIY+TDDY ++ G +D G+F L DGSI
Sbjct: 308 LGDMMLFIGENSSLALSASGLSGCMGDCIYYTDDY-SANNYDGHIGEHDLGIFKLSDGSI 366
Query: 979 ERHCPI-------QTNMKFPPPIWIEP 1038
E P+ + +++PPP+WI P
Sbjct: 367 E---PLPCYPRNSYSRLQWPPPLWISP 390