BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011626
         (1000 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002530951.1| conserved hypothetical protein [Ricinus comm...    73   1e-10
ref|XP_003554063.1| PREDICTED: F-box protein SKIP24-like [Glycin...    71   5e-10
ref|XP_002319735.1| f-box family protein [Populus trichocarpa] g...    70   8e-10
gb|AFK35084.1| unknown [Lotus japonicus]                               66   1e-08
gb|AFK35078.1| unknown [Lotus japonicus]                               66   1e-08

>ref|XP_002530951.1| conserved hypothetical protein [Ricinus communis]
           gi|223529466|gb|EEF31423.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 261

 Score = 72.8 bits (177), Expect = 1e-10
 Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 6/121 (4%)
 Frame = +3

Query: 36  MKAISDEIWIKILETGIYNSILKFDDICSFSECCKNFNKLSSQETIWSTLLTIDF-PRDQ 212
           M  + DE+W +I+E GI +S   + D+C  S CC+  ++LS++ + WS  L+ DF P  Q
Sbjct: 1   MSGLPDELWRQIIEFGIRSSNFSYKDLCCISICCRRLHRLSNEHSFWSHFLSSDFPPSPQ 60

Query: 213 NQENDETPE-----ATKKSVYMDRLKKNIKQKWADLRSDFLKHERALIADDLRISKQRRK 377
            Q++ + P      +T KS Y  R +K  ++K A        H RA++  +  I ++ RK
Sbjct: 61  QQQHQQNPNPNNYTSTAKSTYKIRFEKEREKKVA-------AHRRAVLRKESEIMERERK 113

Query: 378 L 380
           +
Sbjct: 114 I 114


>ref|XP_003554063.1| PREDICTED: F-box protein SKIP24-like [Glycine max]
          Length = 267

 Score = 70.9 bits (172), Expect = 5e-10
 Identities = 39/171 (22%), Positives = 83/171 (48%)
 Frame = +3

Query: 45  ISDEIWIKILETGIYNSILKFDDICSFSECCKNFNKLSSQETIWSTLLTIDFPRDQNQEN 224
           + DE+W +ILE GI ++   + D+C  S  C+  ++LSS+E +W+ LL  D+P+ Q+  +
Sbjct: 6   LPDELWRRILEIGIESNGFSYKDLCCVSISCRRLHRLSSEEPLWNRLLFSDYPQSQSHPS 65

Query: 225 DETPEATKKSVYMDRLKKNIKQKWADLRSDFLKHERALIADDLRISKQRRKLMVFYERTK 404
             +  ++ KS+Y  R +++ +++ A        H RA++  + ++++  R+L     R  
Sbjct: 66  SSSSSSSSKSLYRLRFERDKERRIA-------AHRRAVLRKESQVAEHSRRLKDMKTRLA 118

Query: 405 RNKANGDSVDSDFEQRFDLIEYLQKSLKDRFRRAKVLHAKIMAGQDIKFLE 557
           +          D            + L+  F    V   +++ G+  + +E
Sbjct: 119 QETTKATQTAQDLSN--------LRRLRQAFVALNVWQPEVVRGRQKQMVE 161


>ref|XP_002319735.1| f-box family protein [Populus trichocarpa]
           gi|222858111|gb|EEE95658.1| f-box family protein
           [Populus trichocarpa]
          Length = 273

 Score = 70.1 bits (170), Expect = 8e-10
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
 Frame = +3

Query: 36  MKAISDEIWIKILETGIYNSILKFDDICSFSECCKNFNKLSSQETIWSTLLTIDF--PRD 209
           M  + DE+W +ILE GI NS L + D+C  S  C+  ++LS++ ++W  LL+ DF  P  
Sbjct: 1   MGGVPDELWRQILEMGIQNSKLNYKDLCCISISCRRLHRLSAENSLWLLLLSSDFPSPNQ 60

Query: 210 QNQENDETPEATKKSVYMDRLKKNIKQKWADLRSDFLKHERALIADDLRISKQRRKL 380
           QN   + +  A+ KS Y  + ++   +K A        H RA++  +  + +  RK+
Sbjct: 61  QNPNPNNSTSASAKSTYKIKFEREKSRKVA-------AHRRAVLRKESEVLEFERKI 110


>gb|AFK35084.1| unknown [Lotus japonicus]
          Length = 257

 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 32/115 (27%), Positives = 67/115 (58%)
 Frame = +3

Query: 36  MKAISDEIWIKILETGIYNSILKFDDICSFSECCKNFNKLSSQETIWSTLLTIDFPRDQN 215
           M ++ +E+W +ILE G+ +S   + D+C  S  C+ F++LSS +++W+ LL+ DFP    
Sbjct: 13  MSSLPEELWRRILEIGVESSGFTYKDLCCISISCRRFHRLSSDDSLWNPLLSSDFP-SLT 71

Query: 216 QENDETPEATKKSVYMDRLKKNIKQKWADLRSDFLKHERALIADDLRISKQRRKL 380
             +  +   + KS+Y  R +++ +++ A        H+R ++  + ++++  RKL
Sbjct: 72  PPSSSSTSPSAKSLYKLRFERDKERRIA-------AHKRVVLRKESQVAEHSRKL 119


>gb|AFK35078.1| unknown [Lotus japonicus]
          Length = 257

 Score = 65.9 bits (159), Expect = 1e-08
 Identities = 32/115 (27%), Positives = 67/115 (58%)
 Frame = +3

Query: 36  MKAISDEIWIKILETGIYNSILKFDDICSFSECCKNFNKLSSQETIWSTLLTIDFPRDQN 215
           M ++ +E+W +ILE G+ +S   + D+C  S  C+ F++LSS +++W+ LL+ DFP    
Sbjct: 13  MSSLPEELWRRILEIGVESSGFTYKDLCCISISCRRFHRLSSDDSLWNPLLSSDFP-SLT 71

Query: 216 QENDETPEATKKSVYMDRLKKNIKQKWADLRSDFLKHERALIADDLRISKQRRKL 380
             +  +   + KS+Y  R +++ +++ A        H+R ++  + ++++  RKL
Sbjct: 72  PPSSSSTSPSAKSLYKLRFERDKERRIA-------AHKRVVLRKESQVAEHSRKL 119