BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011572
         (1660 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16283.3| unnamed protein product [Vitis vinifera]              652   0.0  
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ...   652   0.0  
ref|XP_004143721.1| PREDICTED: general transcription factor IIH ...   609   e-172
ref|XP_003554116.1| PREDICTED: general transcription factor IIH ...   603   e-170
ref|XP_003624959.1| General transcription factor IIH subunit [Me...   603   e-170

>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  652 bits (1682), Expect = 0.0
 Identities = 308/394 (78%), Positives = 342/394 (86%), Gaps = 1/394 (0%)
 Frame = +3

Query: 144  MEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXXIQKGLIR 323
            ++AWERAYADERSWESLQEDESGLLRPID  +++HAQY               IQKGLIR
Sbjct: 97   LDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIR 156

Query: 324  YLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTD 503
            YLYIV+D SRAA+EMDF+PSRM VVAKH+EAFIREFFDQNPLS +GL++IKDG+A CLTD
Sbjct: 157  YLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTD 216

Query: 504  LGGSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD 683
            LGGSPDSH+KALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD
Sbjct: 217  LGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD 276

Query: 684  VMETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXX 863
            +METIQ+CK S+IRCSV+GLSAEI+IC+HLCQETGGSY+VALDE HFK            
Sbjct: 277  IMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPA 336

Query: 864  XXXFAVSNLIKMGFPQRAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLT 1040
               FA++NLIKMGFPQRAAEGVISIC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLT
Sbjct: 337  IAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLT 396

Query: 1041 LVSSPHLARSYHHLFPITPFNEVSSTTLNDPHIKLQRSCFGCQQMLPLPGKKPSLRVACP 1220
            LVSSPHLARSYHHLFPI PF+EVS + LN+PH +  R+CFGCQ+ L +PG KP+L VACP
Sbjct: 397  LVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACP 456

Query: 1221 KCNQHFCLECDIYIHESLHNCPGCESLRHSKPVS 1322
            KC QHFCL+CDIYIHESLHNCPGCES RHSK VS
Sbjct: 457  KCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVS 490


>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
            vinifera]
          Length = 433

 Score =  652 bits (1682), Expect = 0.0
 Identities = 308/394 (78%), Positives = 342/394 (86%), Gaps = 1/394 (0%)
 Frame = +3

Query: 144  MEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXXIQKGLIR 323
            ++AWERAYADERSWESLQEDESGLLRPID  +++HAQY               IQKGLIR
Sbjct: 36   LDAWERAYADERSWESLQEDESGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIR 95

Query: 324  YLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTD 503
            YLYIV+D SRAA+EMDF+PSRM VVAKH+EAFIREFFDQNPLS +GL++IKDG+A CLTD
Sbjct: 96   YLYIVVDLSRAASEMDFKPSRMAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTD 155

Query: 504  LGGSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD 683
            LGGSPDSH+KALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD
Sbjct: 156  LGGSPDSHVKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD 215

Query: 684  VMETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXX 863
            +METIQ+CK S+IRCSV+GLSAEI+IC+HLCQETGGSY+VALDE HFK            
Sbjct: 216  IMETIQECKKSKIRCSVIGLSAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPA 275

Query: 864  XXXFAVSNLIKMGFPQRAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLT 1040
               FA++NLIKMGFPQRAAEGVISIC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLT
Sbjct: 276  IAEFAIANLIKMGFPQRAAEGVISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLT 335

Query: 1041 LVSSPHLARSYHHLFPITPFNEVSSTTLNDPHIKLQRSCFGCQQMLPLPGKKPSLRVACP 1220
            LVSSPHLARSYHHLFPI PF+EVS + LN+PH +  R+CFGCQ+ L +PG KP+L VACP
Sbjct: 336  LVSSPHLARSYHHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACP 395

Query: 1221 KCNQHFCLECDIYIHESLHNCPGCESLRHSKPVS 1322
            KC QHFCL+CDIYIHESLHNCPGCES RHSK VS
Sbjct: 396  KCKQHFCLDCDIYIHESLHNCPGCESFRHSKIVS 429


>ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
            sativus]
          Length = 423

 Score =  609 bits (1571), Expect = e-172
 Identities = 285/393 (72%), Positives = 326/393 (82%), Gaps = 3/393 (0%)
 Frame = +3

Query: 144  MEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXXIQKGLIR 323
            + AWER YAD+RSWE+LQEDESGLLRPID  +++HAQY               IQKGLIR
Sbjct: 25   LAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLIR 84

Query: 324  YLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTD 503
            YLYIVIDFS+AA EMDFRPSRM VVAKHV+AF+REFFDQNPLS +GL++IKDG A+CLTD
Sbjct: 85   YLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLTD 144

Query: 504  LGGSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD 683
            LGGSP+SH+KALMGKLECSGD+SLQN L+LVH YLNQIPSYGHREVL+LYSAL++CDPGD
Sbjct: 145  LGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPGD 204

Query: 684  VMETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXX 863
            +MET+QKCK S+IRCSV+GL+AEI+IC+HLCQETGGSY+VALDE HFK            
Sbjct: 205  IMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPA 264

Query: 864  XXXFAVSNLIKMGFPQRAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLT 1040
                A+ NLIKMGFPQRAAE  I+IC+CHKEAKV GGYTCPRCKARVCELPTEC+ICGLT
Sbjct: 265  IADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLT 324

Query: 1041 LVSSPHLARSYHHLFPITPFNEVSSTTLNDPHIKLQRSCFGCQQML--PLPGKKPSLRVA 1214
            L+SSPHLARSYHHLFPI PF+EVS    +DP  +L + CFGCQ+ L  P  G  PS+RV+
Sbjct: 325  LISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRVS 384

Query: 1215 CPKCNQHFCLECDIYIHESLHNCPGCESLRHSK 1313
            CPKC QHFCL+CDIYIHESLHNCPGCES R  K
Sbjct: 385  CPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 417


>ref|XP_003554116.1| PREDICTED: general transcription factor IIH subunit 2-like [Glycine
            max]
          Length = 420

 Score =  603 bits (1554), Expect = e-170
 Identities = 280/394 (71%), Positives = 326/394 (82%), Gaps = 1/394 (0%)
 Frame = +3

Query: 144  MEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXXIQKGLIR 323
            +EAWER YA++RSWE+LQEDESGLLRPIDT +++HAQY               IQKGLIR
Sbjct: 24   LEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLIR 83

Query: 324  YLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTD 503
            YLYIV+D S+AA+E DFRPSRM V+ K VEAFIREFFDQNPLSHVGL++IKDG+AHC+T+
Sbjct: 84   YLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITE 143

Query: 504  LGGSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD 683
            LGGSP+SHIKALMGKLECSGD+SLQNAL+LV GYLNQIPSYGHREVLILYSALSTCDPGD
Sbjct: 144  LGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGD 203

Query: 684  VMETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXX 863
            +METIQKCK S+IRCSV+GL+AE+++CKHLCQETGG+Y+VALDE HFK            
Sbjct: 204  LMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPA 263

Query: 864  XXXFAVSNLIKMGFPQRAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLT 1040
               +A +NLIKMGFPQR+AEG ++IC CH+EAK  GGYTCPRCK RVCELPTEC++CGLT
Sbjct: 264  IAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLT 323

Query: 1041 LVSSPHLARSYHHLFPITPFNEVSSTTLNDPHIKLQRSCFGCQQMLPLPGKKPSLRVACP 1220
            L+SSPHLARSYHHLFPI  F+EV+ ++ ND +     +CFGCQQ L   G KP L V CP
Sbjct: 324  LISSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSFPNTCFGCQQSLLSQGNKPGLSVICP 383

Query: 1221 KCNQHFCLECDIYIHESLHNCPGCESLRHSKPVS 1322
            KC Q FCL+CDIY+HESLHNCPGCES RHSK V+
Sbjct: 384  KCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVT 417


>ref|XP_003624959.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355499974|gb|AES81177.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 426

 Score =  603 bits (1554), Expect = e-170
 Identities = 285/398 (71%), Positives = 325/398 (81%), Gaps = 5/398 (1%)
 Frame = +3

Query: 144  MEAWERAYADERSWESLQEDESGLLRPIDTDSLHHAQYXXXXXXXXXXXXXXXIQKGLIR 323
            +EAWERAY ++RSWESLQEDESGLLRPIDT ++HHAQY               IQKGLIR
Sbjct: 26   LEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLIR 85

Query: 324  YLYIVIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHVGLISIKDGVAHCLTD 503
            YLYIV+D S+AA+E DFRPSRM V+AK VE FIREFFDQNPLSHVGL++ KDGVA+CLTD
Sbjct: 86   YLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLTD 145

Query: 504  LGGSPDSHIKALMGKLECSGDSSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGD 683
            LGGSP+SHIKALMGKLECSGD+SLQNAL+LVH  LNQIPSYGHREVLILYSALSTCDPGD
Sbjct: 146  LGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPGD 205

Query: 684  VMETIQKCKISRIRCSVVGLSAEIYICKHLCQETGGSYTVALDEPHFKXXXXXXXXXXXX 863
            +METIQKCK S+IRCSV+GL+AE++ICKHLCQETGG+Y+VALDE HFK            
Sbjct: 206  LMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPPA 265

Query: 864  XXXFAVSNLIKMGFPQRAAEGVISICACHKEAKV-GGYTCPRCKARVCELPTECQICGLT 1040
               +A +NLIKMGFPQRAAEG ++IC CH+EAK  GGYTCPRCK RVCELPTEC++CGLT
Sbjct: 266  IAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGLT 325

Query: 1041 LVSSPHLARSYHHLFPITPFNEVSSTTLNDPHIKLQRSCFGCQQMLPL----PGKKPSLR 1208
            L+SSPHLARSYHHLFPI PF E+S ++ NDP+     +CFGCQQ L       G K  L 
Sbjct: 326  LISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQQSLLSQGFGAGNKAELS 385

Query: 1209 VACPKCNQHFCLECDIYIHESLHNCPGCESLRHSKPVS 1322
            V+CPKC Q FCL+CD+YIHESLHNCPGCES RHSK V+
Sbjct: 386  VSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSKSVT 423