BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011379
         (1654 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...   137   1e-29
ref|XP_002328907.1| predicted protein [Populus trichocarpa] gi|2...   133   1e-28
emb|CBI40164.3| unnamed protein product [Vitis vinifera]              130   8e-28
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...   129   3e-27
ref|XP_002520393.1| ubiquitin-protein ligase, putative [Ricinus ...   124   6e-26

>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
            gi|355511583|gb|AES92725.1| F-box family protein
            [Medicago truncatula]
          Length = 392

 Score =  137 bits (344), Expect = 1e-29
 Identities = 109/362 (30%), Positives = 175/362 (48%), Gaps = 21/362 (5%)
 Frame = +3

Query: 117  QLPAKDLIKFRCVSKTWLRLLKSDHHFINLHLHRSIQANYSSIILVRTH*G--------- 269
            ++PAK L++ R   K W  L+ S   FI LHL +S      S+I++R H           
Sbjct: 15   RVPAKPLLRLRSTCKWWRNLIDSTD-FIFLHLSKS----RDSVIILRQHSRLYELDLNSM 69

Query: 270  --TENLRHHLIDVSSREYFIIPSICNGXXXXXXXXXXXXFDIYIWNPVTKEHVTIPCPP- 440
               + L H L+  S+R    +   CNG             DI  WNP  ++H  IP  P 
Sbjct: 70   DRVKELDHPLMCYSNR--IKVLGSCNGLLCICNIAD----DIAFWNPTIRKHRIIPSEPL 123

Query: 441  IPSDFPINDPFTNTK----FAFGFHQGSNEYKVVRIVSTYPPNDSSGKVFQTHVSVYTLG 608
            I  +   N+  T       + FG+   +++YK+V I       D   + F +HV +YT+ 
Sbjct: 124  IRKETNENNTITTLLAAHVYGFGYDSATDDYKLVSISYFV---DLHNRSFDSHVKIYTM- 179

Query: 609  DTTGLWKATLDPLSSYIDSVKT--ALVNGSRHWLACNPFD-RMQKFIVSFDIKDEVFQEI 779
              T +WK TL  +   +   +T    V+G+ HW+     +   +  IV+FD++ EVF+E+
Sbjct: 180  -RTDVWK-TLPSMPYALCCARTMGVFVSGALHWVVTRDLEPESRDLIVAFDLRFEVFREV 237

Query: 780  SLPNCLDYDCDTKIRQLGGLLCIFLYCYEDVVEVWVMKEYGVVGSWTKLFKVGRPDIGGH 959
            +LP  +D   D  +  L G+LCI      D  +VWVM+EYG   SW K+F VG+P     
Sbjct: 238  ALPGTVDGKFDMDVALLRGMLCIIENRGSDGFDVWVMREYGSHDSWCKMFTVGQPRDVKL 297

Query: 960  IFLLEPLGVANSGD-IVIKKNELELVVYNPKTNSIRTLETFGFDFSKSYTY-IGSLLSPR 1133
            +  L+PLG + +GD ++ +++  +L  YN  +  +  +   G   S   T  +GSL+ P 
Sbjct: 298  MKSLKPLGYSRNGDKVLFEQDSKKLCWYNLASKDVSWVRISGIPNSIEGTVCVGSLVKPS 357

Query: 1134 VI 1139
            ++
Sbjct: 358  LM 359


>ref|XP_002328907.1| predicted protein [Populus trichocarpa] gi|222839337|gb|EEE77674.1|
            predicted protein [Populus trichocarpa]
          Length = 374

 Score =  133 bits (335), Expect = 1e-28
 Identities = 113/367 (30%), Positives = 170/367 (46%), Gaps = 23/367 (6%)
 Frame = +3

Query: 117  QLPAKDLIKFRCVSKTWLRLLKSDHHFINLHLHRSIQ---ANYSSIIL-VRTH*GTENLR 284
            +LP K L++F+CVSKTW R L S   F+  HL R+ +   AN+  I L    H   +   
Sbjct: 19   RLPVKCLVRFKCVSKTW-RSLISHPEFVKNHLKRTKEDTNANHYKIFLSTDPHLSIDPEA 77

Query: 285  HHLID-----------VSSREYFIIPSI--CNGXXXXXXXXXXXXFDIYIWNPVTKEHVT 425
            +   D           VS  EY  I  +  CNG              IYIWNP T+E   
Sbjct: 78   YFDADDNLLTTQLKFPVSYPEYSYIEILGSCNGLVCGLIHDNPL---IYIWNPSTRESRE 134

Query: 426  IPCPPIPSDFPINDPFTNTKFAFGFHQGSNEYKVVRIVSTYPPNDSSGKVFQTHVSVYTL 605
            +  P    D    D F    + FG+    ++YK+VR+  +   N + G   +T V V+TL
Sbjct: 135  LAIPGSSED----DAF----YGFGYDVKLDDYKIVRVSISTSTNSTDGSNSETKVEVFTL 186

Query: 606  GDTTGLWKATLDPLSSYIDSVKTALVNGSRHWLACNPFDRMQKFI-VSFDIKDEVFQEIS 782
               + +W+   D   S +      L NG+ HWL        +K + VSFD+ +E F E+ 
Sbjct: 187  --KSNIWRTIQDLRCSVLLEGPGTLANGALHWLVRQENGGSKKCVMVSFDLSEEKFLEMV 244

Query: 783  LPNCL---DYDCDTKIRQLGGLLCIFLYCYEDVVEVWVMKEYGVVGSWTKLFKVGRPDIG 953
                L   D   D +++ LG  LC++ + Y  + E W+MKEY    SWT+  +     I 
Sbjct: 245  PLRGLTEDDSSWDLELKVLGDWLCLYSH-YGLICEAWIMKEYSSEASWTRFLRFNGESIP 303

Query: 954  GHIFLLEPLGVANSGDIVIKKNELELVVYNPKTNSIRTLETF-GFDFSKSYTYIGSLLSP 1130
            G  +    L V  +G++V   +  E+V YNP  ++ R    +   D+ +S  YI SL+SP
Sbjct: 304  GGKYWFRLLWVTKNGNVVYDLDGREVVFYNPDEDTARPFIIYHEGDWFESTAYIESLVSP 363

Query: 1131 -RVIDGV 1148
              + DG+
Sbjct: 364  NNISDGL 370


>emb|CBI40164.3| unnamed protein product [Vitis vinifera]
          Length = 423

 Score =  130 bits (328), Expect = 8e-28
 Identities = 111/367 (30%), Positives = 171/367 (46%), Gaps = 27/367 (7%)
 Frame = +3

Query: 114  LQLPAKDLIKFRCVSKTWLRLLKSDHHFINLHLHRS------------IQANYSSIILVR 257
            L+LP K +++FRCV K+W  L   D  FI++HL ++            + ++   I  +R
Sbjct: 30   LRLPVKSIVRFRCVCKSWCTLF-DDPDFISMHLRQASANSNGRLLFKHLSSSEQEIYSLR 88

Query: 258  TH*GTENLRHHLIDVSSR-EYFIIPSICNGXXXXXXXXXXXXF---DIYIWNPVTKEHVT 425
            ++     +R   + V S+ +Y+ I    NG            +   ++++WNP  +E  T
Sbjct: 89   SNIAFAEVRRLEVPVPSKTDYYQIVGSSNGLICLTESNFKGSYLSLNLFLWNPAIREFQT 148

Query: 426  IPCPPIPSDFPINDPFTNTKFAFGFHQGSNEYKVVRIVSTYPPNDSSGKVFQTHVSVYTL 605
            +P   I +      P       F FH   N+YKVVRIV  +  N +S         VY+L
Sbjct: 149  LPKYHINN---FTSPLMVVGLGFAFHPVINDYKVVRIVY-FMRNKTS------EADVYSL 198

Query: 606  GDTTGLWKATLDPLSSYIDS-VKTALVNGSRHWLAC--NPFDRMQKFIVSFDIKDEVFQE 776
               TG W+     +  YI S V    +NG+ HWLA   N  D     I+SFD+  +VF+E
Sbjct: 199  --RTGSWRKVDANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLILSFDMAKDVFKE 256

Query: 777  ISLPNCLDYDCDTKIRQL-----GGLLCIFLYCYE--DVVEVWVMKEYGVVGSWTKLFKV 935
            I LP   D+  D  IR+      G L  +F   Y   +  +VWVM+EYGV  SWTK F +
Sbjct: 257  IMLP---DFGYDELIRKCLADYKGSLSVLFYDAYHSNENCDVWVMEEYGVAKSWTKHFTI 313

Query: 936  GRPDIGGHIFLLEPLGVANSGDIVI-KKNELELVVYNPKTNSIRTLETFGFDFSKSYTYI 1112
                    I ++ P    ++G+ ++ KK     + +NP     R L   G   ++   Y+
Sbjct: 314  RH-----EIEIIIPFEFFDNGEAILQKKKSGGFISWNPDGIRFRDLGVSG--PARLVEYM 366

Query: 1113 GSLLSPR 1133
             SL+SPR
Sbjct: 367  ESLVSPR 373


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
            gi|222854763|gb|EEE92310.1| f-box family protein [Populus
            trichocarpa]
          Length = 396

 Score =  129 bits (323), Expect = 3e-27
 Identities = 101/353 (28%), Positives = 168/353 (47%), Gaps = 16/353 (4%)
 Frame = +3

Query: 117  QLPAKDLIKFRCVSKTWLRLLKSDHHFINLHLHRSIQANYSSIILVRT--H*GTENLRHH 290
            +LPAK+L+  R VSK W  L+   + F+ LHL  S+  + +  I++RT  H    +   +
Sbjct: 15   RLPAKELLCCRSVSKPWCALIDGPN-FVKLHLKHSMDTSSNLYIILRTTSHVHYMDFEQN 73

Query: 291  LI--DVSSREYFIIPSICN-------GXXXXXXXXXXXXFDIYIWNPVTKEHVTIPCPPI 443
            L+  D  + +    P +C        G             DI +WNP T++H  +P  PI
Sbjct: 74   LVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCISNVVDDIAVWNPSTRKHRVVPFLPI 133

Query: 444  PSDFPINDPFTNTK-FAFGFHQGSNEYKVVRIVSTYPPNDSSGKVFQTHVSVYTLGDTTG 620
                       +   F FG+    ++YK+VRI           + F++ V VY+L   + 
Sbjct: 134  ELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQF---GGGGKRSFESEVKVYSLRKQS- 189

Query: 621  LWKATLD-PLSSYIDSVKTALVNGSRHWLAC-NPFDRMQKFIVSFDIKDEVFQEISLPNC 794
             W+   D P   +         NG+ HW+   NP   +   +V+ D+  E ++E+  P  
Sbjct: 190  -WRRIGDMPYCVHYPGANGVFANGALHWVVGENPESNVANIVVALDLGVEDYREVLQPEY 248

Query: 795  LDYDCDTKIRQLGGLLCIFLYCYEDVVEVWVMKEYGVVGSWTKLFKVGRPDIGGHIFLLE 974
             D +    +  L G LC       + V+VW+MKEYGV  SWTKLF V + ++ G +  L+
Sbjct: 249  KDKNFYIDLGVLRGCLCFLANFLGERVDVWMMKEYGVKESWTKLFSVAQYEVIGFLRSLK 308

Query: 975  PLGVANSGD-IVIKKNELELVVYNPKTNSIRTLETFGFDFS-KSYTYIGSLLS 1127
            PL  + SGD ++I+ + L+L  Y+ K   ++     G  +S ++ T++ SL+S
Sbjct: 309  PLAYSKSGDEVLIEHDNLDLCWYDLKRKQVKN-RIPGIPYSFEADTFVESLIS 360


>ref|XP_002520393.1| ubiquitin-protein ligase, putative [Ricinus communis]
            gi|223540440|gb|EEF42009.1| ubiquitin-protein ligase,
            putative [Ricinus communis]
          Length = 369

 Score =  124 bits (311), Expect(2) = 6e-26
 Identities = 99/364 (27%), Positives = 163/364 (44%), Gaps = 21/364 (5%)
 Frame = +3

Query: 117  QLPAKDLIKFRCVSKTWLRLLKSDHHFINLHLHRSIQAN-------------YSSIILVR 257
            +LP K LI+F+CV +TW  L+ SD  F  LHL R +Q               + S+ +  
Sbjct: 19   RLPVKHLIQFKCVCRTWQYLISSDPEFAKLHLERVLQVTNVHLHRLLLSADPFQSVDMEA 78

Query: 258  TH*GTEN--LRHHLIDVSSREY--FIIPSICNGXXXXXXXXXXXXFDIYIWNPVTKEHVT 425
                 +N  +R H   V + E   F     CNG             +I +WNP T E   
Sbjct: 79   YCDADDNFLIREHRFPVRNPEDDDFEFVGSCNGLISAVFGSDH---EITVWNPSTGESRK 135

Query: 426  IPCPPIPSDFPINDPFTNTKFAFGFHQGSNEYKVVRIVSTYPPNDSSGKVFQTHVSVYTL 605
            +P P   ++  +        + FG+    ++YK+VR  S+   N+   +VF    +    
Sbjct: 136  LPAPTSSTEDKLF-------YGFGYDSKLDDYKIVRGASSASCNEVQMEVFNLKGN---- 184

Query: 606  GDTTGLWKATLDPLSSYIDSVKTALVNGSRHWLACNPFDRMQK--FIVSFDIKDEVFQE- 776
                  W+A  +   +         +NG  HWL     D++ +   IVS D+ +E F E 
Sbjct: 185  -----RWRAIQNLHCNVRFQGSAIALNGILHWLV----DQLNEGLMIVSLDLAEEKFLEM 235

Query: 777  ISLPNCLDYDCDTKIRQLGGLLCIFLYCYEDVVEVWVMKEYGVVGSWTKLFKVGRPDIGG 956
            + LP+ +  +  T+++ LG  L +    +    E W +K YG   SW KLF      + G
Sbjct: 236  VVLPDYVTENWGTELKVLGDSLSVCSSSHTTNFEAWTVKGYGSKASWLKLFSFNSDPLPG 295

Query: 957  HIFLLEPLGVANSGDIVIKKNELELVVYNPKTNSIRTLET-FGFDFSKSYTYIGSLLSPR 1133
              + L  L VA +G++++    LE++VYNPK  +++       + + ++ TYI SL+SP 
Sbjct: 296  CKYWLNVLWVAKNGNVLLNYEGLEIIVYNPKEQTLKQFNVPNNWHWFEAITYIESLVSPN 355

Query: 1134 VIDG 1145
              +G
Sbjct: 356  AGNG 359



 Score = 21.2 bits (43), Expect(2) = 6e-26
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 82  QFPEDVVIEILSSCPPK 132
           Q P +++I+ILS  P K
Sbjct: 7   QLPFEIIIDILSRLPVK 23