BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011250
         (431 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003588646.1| DNA topoisomerase, partial [Medicago truncat...    48   3e-12
ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine...    46   3e-12
ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis v...    49   5e-12
emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]    49   5e-12
emb|CBI20809.3| unnamed protein product [Vitis vinifera]               49   5e-12

>ref|XP_003588646.1| DNA topoisomerase, partial [Medicago truncatula]
           gi|355477694|gb|AES58897.1| DNA topoisomerase, partial
           [Medicago truncatula]
          Length = 671

 Score = 47.8 bits (112), Expect(3) = 3e-12
 Identities = 21/26 (80%), Positives = 25/26 (96%)
 Frame = +3

Query: 300 VSAFLAHHFSEVTDYSFTANMETKCS 377
           VSAFL+HHFSEVTDY+FTA+MET+ S
Sbjct: 594 VSAFLSHHFSEVTDYNFTADMETEVS 619



 Score = 40.0 bits (92), Expect(3) = 3e-12
 Identities = 18/26 (69%), Positives = 23/26 (88%)
 Frame = +1

Query: 151 QDKNYVTIKSRILHPEFRGHMVCSAF 228
           +D+NYVT+KSR++ PEFRG MV SAF
Sbjct: 573 KDRNYVTVKSRVISPEFRGRMV-SAF 597



 Score = 28.1 bits (61), Expect(3) = 3e-12
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 2   RPSTYASTIKVLK 40
           RPSTYAST+KVLK
Sbjct: 561 RPSTYASTLKVLK 573


>ref|XP_003545557.1| PREDICTED: DNA topoisomerase 1-like [Glycine max]
          Length = 1197

 Score = 45.8 bits (107), Expect(3) = 3e-12
 Identities = 21/30 (70%), Positives = 26/30 (86%)
 Frame = +3

Query: 300  VSAFLAHHFSEVTDYSFTANMETKCSPTSS 389
            VSAFL++HFSEVTDYSFTA+MET+    S+
Sbjct: 921  VSAFLSNHFSEVTDYSFTADMETELDNVSA 950



 Score = 42.4 bits (98), Expect(3) = 3e-12
 Identities = 20/26 (76%), Positives = 23/26 (88%)
 Frame = +1

Query: 151 QDKNYVTIKSRILHPEFRGHMVCSAF 228
           QD+NYVT+KSR+L PEFRG MV SAF
Sbjct: 900 QDRNYVTVKSRVLSPEFRGRMV-SAF 924



 Score = 27.3 bits (59), Expect(3) = 3e-12
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +2

Query: 2   RPSTYASTIKVLK 40
           RPSTYASTIKVL+
Sbjct: 888 RPSTYASTIKVLQ 900


>ref|XP_002280960.2| PREDICTED: DNA topoisomerase 1-like [Vitis vinifera]
          Length = 1185

 Score = 48.5 bits (114), Expect(3) = 5e-12
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 300  VSAFLAHHFSEVTDYSFTANMETKCSPTSS 389
            VSAFL+HHFSEVTDYSFTA+MET+    S+
Sbjct: 913  VSAFLSHHFSEVTDYSFTADMETELDNVSA 942



 Score = 42.4 bits (98), Expect(3) = 5e-12
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +1

Query: 151 QDKNYVTIKSRILHPEFRGHMVCSAF 228
           QD+NYVT+K+R+L+PEFRG MV SAF
Sbjct: 892 QDRNYVTVKNRVLYPEFRGRMV-SAF 916



 Score = 23.9 bits (50), Expect(3) = 5e-12
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 2   RPSTYASTIKVLK 40
           RPSTYA T+KVL+
Sbjct: 880 RPSTYAITMKVLQ 892


>emb|CAN67233.1| hypothetical protein VITISV_020021 [Vitis vinifera]
          Length = 1039

 Score = 48.5 bits (114), Expect(3) = 5e-12
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 300  VSAFLAHHFSEVTDYSFTANMETKCSPTSS 389
            VSAFL+HHFSEVTDYSFTA+MET+    S+
Sbjct: 926  VSAFLSHHFSEVTDYSFTADMETELDNVSA 955



 Score = 42.4 bits (98), Expect(3) = 5e-12
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +1

Query: 151 QDKNYVTIKSRILHPEFRGHMVCSAF 228
           QD+NYVT+K+R+L+PEFRG MV SAF
Sbjct: 905 QDRNYVTVKNRVLYPEFRGRMV-SAF 929



 Score = 23.9 bits (50), Expect(3) = 5e-12
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 2   RPSTYASTIKVLK 40
           RPSTYA T+KVL+
Sbjct: 893 RPSTYAITMKVLQ 905


>emb|CBI20809.3| unnamed protein product [Vitis vinifera]
          Length = 1035

 Score = 48.5 bits (114), Expect(3) = 5e-12
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 300 VSAFLAHHFSEVTDYSFTANMETKCSPTSS 389
           VSAFL+HHFSEVTDYSFTA+MET+    S+
Sbjct: 745 VSAFLSHHFSEVTDYSFTADMETELDNVSA 774



 Score = 42.4 bits (98), Expect(3) = 5e-12
 Identities = 19/26 (73%), Positives = 24/26 (92%)
 Frame = +1

Query: 151 QDKNYVTIKSRILHPEFRGHMVCSAF 228
           QD+NYVT+K+R+L+PEFRG MV SAF
Sbjct: 724 QDRNYVTVKNRVLYPEFRGRMV-SAF 748



 Score = 23.9 bits (50), Expect(3) = 5e-12
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +2

Query: 2   RPSTYASTIKVLK 40
           RPSTYA T+KVL+
Sbjct: 712 RPSTYAITMKVLQ 724