BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00011019
         (722 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABD28730.1| Ribonuclease H [Medicago truncatula]                    62   9e-08
ref|NP_242636.1| hypothetical protein BH1770 [Bacillus haloduran...    57   3e-06
ref|XP_003547252.1| PREDICTED: putative ribonuclease H protein A...    57   4e-06

>gb|ABD28730.1| Ribonuclease H [Medicago truncatula]
          Length = 409

 Score = 62.4 bits (150), Expect = 9e-08
 Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
 Frame = +2

Query: 83  NTVEDLALLTQLNLKGRIKPANGIREDSWIPLDRNIVKPKTTDGSSIGNPGVGGAGVIFR 262
           ++++D  L    ++  +    N  RE  W+P     +K    DGS +G+P  G  GVIFR
Sbjct: 217 SSMQDFKLARLFSIPFKTNRVNPCREIIWVPPHGGCMKINC-DGSVVGSPSCGSIGVIFR 275

Query: 263 NSQVELLGLCMD----FTNLEAECIALVLAVEMAADKGWNKLWIERDSMVVILAVKRGT- 427
            SQ    G         T LEAE  A + A+E A +     +WIE DS+ VI A    T 
Sbjct: 276 ASQTMFCGAFAQNIGYATALEAEYSACMFAIEKAKELHLTNIWIETDSVNVIRAFHFNTG 335

Query: 428 LPWPLKAR 451
           +PW +  R
Sbjct: 336 VPWKMHIR 343


>ref|NP_242636.1| hypothetical protein BH1770 [Bacillus halodurans C-125]
           gi|10174388|dbj|BAB05489.1| BH1770 [Bacillus halodurans
           C-125]
          Length = 135

 Score = 57.4 bits (137), Expect = 3e-06
 Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
 Frame = +2

Query: 209 DGSSIGNPGVGGAGVIF--RNSQVELLGLCMD-FTNLEAECIALVLAVEMAADKGWNKLW 379
           DG+S G+PG  GAG+    +N ++E L + +   +N EAE  AL+ A+    ++GWN+LW
Sbjct: 7   DGASAGDPGPSGAGIFIDDKNGRLEHLTIPLGRLSNHEAEFHALIYALRFCQEQGWNELW 66

Query: 380 IERDSMVVILAVKRGTLPWPLKARRQRATLLMEQ 481
           +  DS ++  A+++  +      R QR  LL+E+
Sbjct: 67  VRTDSKLLEEAIEKRYV------RNQRYRLLLEE 94


>ref|XP_003547252.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Glycine
           max]
          Length = 193

 Score = 57.0 bits (136), Expect = 4e-06
 Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
 Frame = +2

Query: 104 LLTQLNLKGRIKPANGIREDSWIPLDRNIVKPKTTDGSSIGNPGVGGAGVIFRNSQVELL 283
           +L +L + G+ +  +  +     PL +   K  T DG+  GNPG  G G IF+N +  +L
Sbjct: 20  ILAKLRITGQSEKKSDYQISELEPLIQGWTKCNT-DGAVKGNPGTAGCGDIFKNERTCVL 78

Query: 284 GLCM----DFTNLEAECIALVLAVEMAADKGWNKLWIERDS 394
           G  +       +L  E  +++LA+ + A K WNKLW+E DS
Sbjct: 79  GCFVLNLGTQNSLFVELTSVILAIGLTAKKNWNKLWLECDS 119