BLASTX nr result
ID: Coptis24_contig00010693
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00010693
(1661 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003529319.1| PREDICTED: mutS2 protein-like isoform 1 [Gly... 502 e-170
ref|XP_003529320.1| PREDICTED: mutS2 protein-like isoform 2 [Gly... 481 e-164
ref|XP_002305805.1| predicted protein [Populus trichocarpa] gi|2... 486 e-164
ref|XP_002519048.1| DNA mismatch repair protein muts2, putative ... 477 e-160
ref|XP_003637393.1| MutS2 family protein [Medicago truncatula] g... 468 e-159
>ref|XP_003529319.1| PREDICTED: mutS2 protein-like isoform 1 [Glycine max]
Length = 914
Score = 502 bits (1293), Expect(2) = e-170
Identities = 260/415 (62%), Positives = 327/415 (78%)
Frame = +1
Query: 415 KSLDQNLSTFSGHISRICKILELSSKESLVLIDEIGCGTDPSEGVALSASILQYLKNRVN 594
+SL+QNLSTFSGHISRICKILE++S +SLVLIDEIG GTDPSEGVALSASILQYLK+RVN
Sbjct: 481 QSLEQNLSTFSGHISRICKILEVASTQSLVLIDEIGGGTDPSEGVALSASILQYLKDRVN 540
Query: 595 LAVVTTHFADLSCLNEKDTRFENAAMEICLETLQPTYHILWGCSGDSNALTIAKSIGFDQ 774
LAVVTTH+ADLS + EKDTRF+NAAME LETLQPTY ILWGC+GDSNAL+IA+SIGFD+
Sbjct: 541 LAVVTTHYADLSSMKEKDTRFDNAAMEFSLETLQPTYRILWGCTGDSNALSIAQSIGFDR 600
Query: 775 KVLDRAHMWVGKLMPDKQLERKNMLYQSLLEERNTLETQARQSLSLHSEITKLYCEIQDE 954
++DRA WV K P++Q ER+ MLYQSL EERN L+ QA ++ S+H+EI +Y EIQ E
Sbjct: 601 NIIDRAQKWVEKFKPEQQQERRGMLYQSLQEERNQLKAQAEKAASVHAEIMSVYNEIQGE 660
Query: 955 AEDLDRREAALKAMETQQVKQELKAAKAQIDGVVKNFENQVSSVSPDQFNILVKKSEAVI 1134
AEDLD+RE L A ETQQV+ EL+ AK+QI+ V++ FE Q+ DQ N L+++SE+ I
Sbjct: 661 AEDLDQREMELMAKETQQVQHELEHAKSQIETVIQKFEKQLRISGRDQLNYLIRESESAI 720
Query: 1135 SSIVEAHRPTGNIFVREADNSSYIPKVGEKVRVKGLGDKLATIVEAPGDDGMALVQYGKV 1314
+SIV+AH P + + EAD + Y P++GE+V VKGLG KLAT+VE+PGDDG +VQYGKV
Sbjct: 721 ASIVKAHTPADSFPINEADRALYTPQIGEQVHVKGLGGKLATVVESPGDDGTIMVQYGKV 780
Query: 1315 KVRVNRNKLNSIQDISRRTKRNAATSTLTGLKGLVLDEHNSVRTLKINNDVDVQYGPVVQ 1494
KVRV ++ + +I SR+ +++ST G + L E+ K N+ D+ YGPVV+
Sbjct: 781 KVRVKKSNIIAIPS-SRKNAVTSSSSTHQGRQSLRNGEYRDNVDNKTND--DISYGPVVR 837
Query: 1495 TSKNTVDIRGMRVEEASHQLSMVISASRSKAVLFVIHGMGTGVVKERVLELLENN 1659
TSKNTVD+RGMRVEEAS QL M I+ASR +VLFVIHGMGTG VKER L++L+N+
Sbjct: 838 TSKNTVDLRGMRVEEASIQLEMAINASRPYSVLFVIHGMGTGAVKERALQILQNH 892
Score = 125 bits (315), Expect(2) = e-170
Identities = 61/83 (73%), Positives = 71/83 (85%), Gaps = 1/83 (1%)
Frame = +2
Query: 77 NGSLHSRKL-SGQSDLPVPIHIKIGSATKVVVISGPNTGGKTASMKTLGLASLMSKAGLY 253
NG++ S+ + G SD PVP+ KIG T+VVVISGPNTGGKTASMKTLGLASLMSKAG++
Sbjct: 399 NGTMASKYMPQGISDFPVPVDFKIGHGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMH 458
Query: 254 LPAKGRPRLPWFDLVLADIGDHQ 322
LPAK P+LPWFDL+LADIGDHQ
Sbjct: 459 LPAKKNPKLPWFDLILADIGDHQ 481
>ref|XP_003529320.1| PREDICTED: mutS2 protein-like isoform 2 [Glycine max]
Length = 902
Score = 481 bits (1239), Expect(2) = e-164
Identities = 253/415 (60%), Positives = 320/415 (77%)
Frame = +1
Query: 415 KSLDQNLSTFSGHISRICKILELSSKESLVLIDEIGCGTDPSEGVALSASILQYLKNRVN 594
+SL+QNLSTFSGHISRICKILE++S +SLVLIDEIG GTDPSEGVALSASILQYLK+RVN
Sbjct: 481 QSLEQNLSTFSGHISRICKILEVASTQSLVLIDEIGGGTDPSEGVALSASILQYLKDRVN 540
Query: 595 LAVVTTHFADLSCLNEKDTRFENAAMEICLETLQPTYHILWGCSGDSNALTIAKSIGFDQ 774
LAVVTTH+ADLS + EKDTRF+NAAME LETLQPTY ILWGC+GDSNAL+IA+SIGFD+
Sbjct: 541 LAVVTTHYADLSSMKEKDTRFDNAAMEFSLETLQPTYRILWGCTGDSNALSIAQSIGFDR 600
Query: 775 KVLDRAHMWVGKLMPDKQLERKNMLYQSLLEERNTLETQARQSLSLHSEITKLYCEIQDE 954
++DRA WV K P++Q ER+ MLYQSL EERN L+ QA ++ S+H+EI +Y EIQ E
Sbjct: 601 NIIDRAQKWVEKFKPEQQQERRGMLYQSLQEERNQLKAQAEKAASVHAEIMSVYNEIQGE 660
Query: 955 AEDLDRREAALKAMETQQVKQELKAAKAQIDGVVKNFENQVSSVSPDQFNILVKKSEAVI 1134
AEDLD+RE L A ETQQV+ EL+ AK+QI+ V++ FE Q+ DQ N L+++SE+ I
Sbjct: 661 AEDLDQREMELMAKETQQVQHELEHAKSQIETVIQKFEKQLRISGRDQLNYLIRESESAI 720
Query: 1135 SSIVEAHRPTGNIFVREADNSSYIPKVGEKVRVKGLGDKLATIVEAPGDDGMALVQYGKV 1314
+SIV+AH P + + EAD + Y P++GE+V VKGLG KLAT+VE+PGDDG +VQYGKV
Sbjct: 721 ASIVKAHTPADSFPINEADRALYTPQIGEQVHVKGLGGKLATVVESPGDDGTIMVQYGKV 780
Query: 1315 KVRVNRNKLNSIQDISRRTKRNAATSTLTGLKGLVLDEHNSVRTLKINNDVDVQYGPVVQ 1494
KVRV ++ + +I +++NA TS+ + +G VR + +V+
Sbjct: 781 KVRVKKSNIIAIPS----SRKNAVTSSSSTHQG------RQVRIKMFRYLLS-----LVR 825
Query: 1495 TSKNTVDIRGMRVEEASHQLSMVISASRSKAVLFVIHGMGTGVVKERVLELLENN 1659
TSKNTVD+RGMRVEEAS QL M I+ASR +VLFVIHGMGTG VKER L++L+N+
Sbjct: 826 TSKNTVDLRGMRVEEASIQLEMAINASRPYSVLFVIHGMGTGAVKERALQILQNH 880
Score = 125 bits (315), Expect(2) = e-164
Identities = 61/83 (73%), Positives = 71/83 (85%), Gaps = 1/83 (1%)
Frame = +2
Query: 77 NGSLHSRKL-SGQSDLPVPIHIKIGSATKVVVISGPNTGGKTASMKTLGLASLMSKAGLY 253
NG++ S+ + G SD PVP+ KIG T+VVVISGPNTGGKTASMKTLGLASLMSKAG++
Sbjct: 399 NGTMASKYMPQGISDFPVPVDFKIGHGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMH 458
Query: 254 LPAKGRPRLPWFDLVLADIGDHQ 322
LPAK P+LPWFDL+LADIGDHQ
Sbjct: 459 LPAKKNPKLPWFDLILADIGDHQ 481
>ref|XP_002305805.1| predicted protein [Populus trichocarpa] gi|222848769|gb|EEE86316.1|
predicted protein [Populus trichocarpa]
Length = 908
Score = 486 bits (1251), Expect(2) = e-164
Identities = 256/412 (62%), Positives = 316/412 (76%)
Frame = +1
Query: 415 KSLDQNLSTFSGHISRICKILELSSKESLVLIDEIGCGTDPSEGVALSASILQYLKNRVN 594
+SL+QNLSTFSGHISRICKILE++S ESLVL+DEI GTDPSEGVALS SIL YL++ VN
Sbjct: 481 QSLEQNLSTFSGHISRICKILEVASNESLVLVDEICSGTDPSEGVALSTSILHYLRDHVN 540
Query: 595 LAVVTTHFADLSCLNEKDTRFENAAMEICLETLQPTYHILWGCSGDSNALTIAKSIGFDQ 774
LAVVTTH+ADLS L +KD+RFENAAME LETLQPTY ILWGC+GDSNAL+IAKSIGFD
Sbjct: 541 LAVVTTHYADLSLLKDKDSRFENAAMEFSLETLQPTYQILWGCTGDSNALSIAKSIGFDS 600
Query: 775 KVLDRAHMWVGKLMPDKQLERKNMLYQSLLEERNTLETQARQSLSLHSEITKLYCEIQDE 954
+++RA WV KL+P+KQ ER MLYQSLLEERN LE QAR+ SLH+EI +LY EIQ E
Sbjct: 601 NIIERARKWVEKLVPEKQQERSGMLYQSLLEERNRLEAQARKGASLHTEIMELYHEIQAE 660
Query: 955 AEDLDRREAALKAMETQQVKQELKAAKAQIDGVVKNFENQVSSVSPDQFNILVKKSEAVI 1134
+EDLD R AL A ETQ V+ ELKAA +QI+ VV+N E Q+ SPDQFN L+KKSE+ I
Sbjct: 661 SEDLDGRVKALMAKETQLVQLELKAANSQIETVVQNVETQLRKASPDQFNSLIKKSESAI 720
Query: 1135 SSIVEAHRPTGNIFVREADNSSYIPKVGEKVRVKGLGDKLATIVEAPGDDGMALVQYGKV 1314
+SIVEAH + ++ E D SSY P++GE+V VK LG+KLAT+VEAP DD LVQYGK+
Sbjct: 721 ASIVEAHCSSDSLPASETDTSSYTPQLGEQVLVKRLGNKLATVVEAPRDDETVLVQYGKI 780
Query: 1315 KVRVNRNKLNSIQDISRRTKRNAATSTLTGLKGLVLDEHNSVRTLKINNDVDVQYGPVVQ 1494
+VR+ ++ + +I + K++ AT + LK V + ++N D +V +GP VQ
Sbjct: 781 RVRMKKSDIRAI----KSDKKSKATILVPSLKRQVKQSFS-----ELNKDEEVSHGPRVQ 831
Query: 1495 TSKNTVDIRGMRVEEASHQLSMVISASRSKAVLFVIHGMGTGVVKERVLELL 1650
TSKNTVD+RGMRVEEA+ L+M ISA +V+FV+HGMGTG VKE LE+L
Sbjct: 832 TSKNTVDLRGMRVEEAAQHLNMAISAREPLSVIFVVHGMGTGAVKEGALEVL 883
Score = 120 bits (301), Expect(2) = e-164
Identities = 57/70 (81%), Positives = 63/70 (90%)
Frame = +2
Query: 113 SDLPVPIHIKIGSATKVVVISGPNTGGKTASMKTLGLASLMSKAGLYLPAKGRPRLPWFD 292
S+ PVPI+IK+ T+VVVISGPNTGGKTASMKTLG+ASLMSKAGLYLPAK P+LPWFD
Sbjct: 412 SEFPVPINIKVECGTRVVVISGPNTGGKTASMKTLGVASLMSKAGLYLPAKNTPKLPWFD 471
Query: 293 LVLADIGDHQ 322
VLADIGDHQ
Sbjct: 472 FVLADIGDHQ 481
>ref|XP_002519048.1| DNA mismatch repair protein muts2, putative [Ricinus communis]
gi|223541711|gb|EEF43259.1| DNA mismatch repair protein
muts2, putative [Ricinus communis]
Length = 873
Score = 477 bits (1228), Expect(2) = e-160
Identities = 254/412 (61%), Positives = 315/412 (76%)
Frame = +1
Query: 415 KSLDQNLSTFSGHISRICKILELSSKESLVLIDEIGCGTDPSEGVALSASILQYLKNRVN 594
+SL+QNLSTFSGHISRICKILE++SKESLVLIDEI GTDPSEGVALS SILQYL++RVN
Sbjct: 448 QSLEQNLSTFSGHISRICKILEVTSKESLVLIDEICSGTDPSEGVALSTSILQYLRDRVN 507
Query: 595 LAVVTTHFADLSCLNEKDTRFENAAMEICLETLQPTYHILWGCSGDSNALTIAKSIGFDQ 774
LAVVTTH+ADLS L + D++FENAAME LETLQPTY ILWG +G+SNAL+IAKSIGFD
Sbjct: 508 LAVVTTHYADLSLLKDSDSQFENAAMEFSLETLQPTYQILWGSTGNSNALSIAKSIGFDS 567
Query: 775 KVLDRAHMWVGKLMPDKQLERKNMLYQSLLEERNTLETQARQSLSLHSEITKLYCEIQDE 954
+++RA WV KL+P+KQ RK +LY+SL++ERN LE QAR++ S+H++I +LY EIQDE
Sbjct: 568 NIIERAEKWVEKLIPEKQQHRKGLLYKSLMDERNKLEAQAREAASVHAQIMELYYEIQDE 627
Query: 955 AEDLDRREAALKAMETQQVKQELKAAKAQIDGVVKNFENQVSSVSPDQFNILVKKSEAVI 1134
A +LD R AL A ETQQV+QELKA K+QI+ VV NFEN + SP QFN L++KSE+ I
Sbjct: 628 AGNLDSRIMALMAKETQQVQQELKATKSQIETVVHNFENLLRKASPLQFNSLIRKSESAI 687
Query: 1135 SSIVEAHRPTGNIFVREADNSSYIPKVGEKVRVKGLGDKLATIVEAPGDDGMALVQYGKV 1314
+SIVEAH P N+ E D SSY P++GE+V +KG G+K+AT+VEAPG D LVQYGK+
Sbjct: 688 ASIVEAHYPADNLPASE-DVSSYTPQLGEQVHLKGFGNKVATVVEAPGKDETILVQYGKI 746
Query: 1315 KVRVNRNKLNSIQDISRRTKRNAATSTLTGLKGLVLDEHNSVRTLKINNDVDVQYGPVVQ 1494
+VRV ++ + +IQ KR AT + LK H ++N D D YGP VQ
Sbjct: 747 RVRVKKSDIRAIQG----KKRTEATKLVPRLKRQGQQSH-----AEVNKDED-SYGPRVQ 796
Query: 1495 TSKNTVDIRGMRVEEASHQLSMVISASRSKAVLFVIHGMGTGVVKERVLELL 1650
TSKNTVD+RGMRVEEA L+M IS +V+FV+HGMGTG VK+R LE+L
Sbjct: 797 TSKNTVDLRGMRVEEAVLHLNMAISEREPHSVIFVVHGMGTGAVKQRALEIL 848
Score = 115 bits (289), Expect(2) = e-160
Identities = 54/73 (73%), Positives = 64/73 (87%)
Frame = +2
Query: 104 SGQSDLPVPIHIKIGSATKVVVISGPNTGGKTASMKTLGLASLMSKAGLYLPAKGRPRLP 283
S Q PVPI+IK+ T+VVVISGPNTGGKTASMKTLG+ASLMSKAGL+LPA+ P++P
Sbjct: 376 SSQQKFPVPINIKVECGTRVVVISGPNTGGKTASMKTLGIASLMSKAGLFLPARNTPKIP 435
Query: 284 WFDLVLADIGDHQ 322
WFD+VLADIGD+Q
Sbjct: 436 WFDVVLADIGDNQ 448
>ref|XP_003637393.1| MutS2 family protein [Medicago truncatula]
gi|355503328|gb|AES84531.1| MutS2 family protein
[Medicago truncatula]
Length = 913
Score = 468 bits (1203), Expect(2) = e-159
Identities = 250/418 (59%), Positives = 315/418 (75%), Gaps = 3/418 (0%)
Frame = +1
Query: 415 KSLDQNLSTFSGHISRICKILELSSKESLVLIDEIGCGTDPSEGVALSASILQYLKNRVN 594
+SL+QNLSTFSGHISRI K LE++SK+SLVLIDEIG GTDPSEGVALSASILQYL+ VN
Sbjct: 479 QSLEQNLSTFSGHISRIRKFLEVASKQSLVLIDEIGSGTDPSEGVALSASILQYLREHVN 538
Query: 595 LAVVTTHFADLSCLNEKDTRFENAAMEICLETLQPTYHILWGCSGDSNALTIAKSIGFDQ 774
LAVVTTH+ADLS + EKDT FENAAME LETLQPTY +LWGC+GDSNAL+IA+SIGFD+
Sbjct: 539 LAVVTTHYADLSTMKEKDTCFENAAMEFSLETLQPTYRVLWGCTGDSNALSIAQSIGFDK 598
Query: 775 KVLDRAHMWVGKLMPDKQLERKNMLYQSLLEERNTLETQARQSLSLHSEITKLYCEIQDE 954
++D A WV KL P++Q ER+ MLYQSL EE+N L+ QA ++ S+H+EI +Y EIQ E
Sbjct: 599 NIIDHAQKWVEKLKPEQQQERRGMLYQSLQEEKNRLKAQAEKAASIHAEIMNVYSEIQGE 658
Query: 955 AEDLDRREAALKAMETQQVKQELKAAKAQIDGVVKNFENQVSSVSPDQFNILVKKSEAVI 1134
AEDLDRRE L A E QQV+QEL+ AK+Q++ V++ FE Q+ + +Q N ++K+SE I
Sbjct: 659 AEDLDRRETMLMAKEAQQVQQELEDAKSQMEIVIQKFEKQLKDLGRNQLNSIIKESETAI 718
Query: 1135 SSIVEAHRPTGNIFVREAD-NSSYIPKVGEKVRVKGLGDKLATIVEAPGDDGMALVQYGK 1311
+SIV+AH P + +AD +SY P+ GE+VRVKGLG KLAT+VE GDD LVQYGK
Sbjct: 719 ASIVKAHTPAVGFPINDADRTTSYTPQFGEQVRVKGLGGKLATVVELLGDDETILVQYGK 778
Query: 1312 VKVRVNRNKLNSIQDISRRTKRNAATSTLTGLKGLVLDEHNSVRTLKIN--NDVDVQYGP 1485
VKVRV +N++ +I + +N TS+ T S L++N ND D YGP
Sbjct: 779 VKVRVKKNRIRAIPP----SAKNPVTSSATHQGRQKPLNGKSRGNLEMNGGND-DSYYGP 833
Query: 1486 VVQTSKNTVDIRGMRVEEASHQLSMVISASRSKAVLFVIHGMGTGVVKERVLELLENN 1659
VVQTSKNTVD+RGMR+EEA+ L M I+AS+ +VLFVIHGMGTG VK+R L +L+ +
Sbjct: 834 VVQTSKNTVDLRGMRLEEAAIHLEMAINASQPYSVLFVIHGMGTGAVKDRALAILQKH 891
Score = 122 bits (307), Expect(2) = e-159
Identities = 60/83 (72%), Positives = 70/83 (84%), Gaps = 1/83 (1%)
Frame = +2
Query: 77 NGSLHSRKLS-GQSDLPVPIHIKIGSATKVVVISGPNTGGKTASMKTLGLASLMSKAGLY 253
NG++ S+ S G +D PVP+ KI S T+VVVISGPNTGGKTASMKTLGLASLMSKAG++
Sbjct: 397 NGTMASKSASQGITDFPVPVDFKIRSGTRVVVISGPNTGGKTASMKTLGLASLMSKAGMH 456
Query: 254 LPAKGRPRLPWFDLVLADIGDHQ 322
LPAK P+LPWFDL+L DIGDHQ
Sbjct: 457 LPAKKSPKLPWFDLILVDIGDHQ 479