BLASTX nr result

ID: Coptis24_contig00010567 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010567
         (719 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002330157.1| predicted protein [Populus trichocarpa] gi|1...   145   6e-33
gb|AAO27366.1| rapid alkalinization factor 1 precursor [Populus ...   145   8e-33
emb|CBI26076.3| unnamed protein product [Vitis vinifera]              145   8e-33
ref|XP_002512426.1| RALFL33, putative [Ricinus communis] gi|2235...   144   2e-32
ref|XP_002321018.1| predicted protein [Populus trichocarpa] gi|2...   144   2e-32

>ref|XP_002330157.1| predicted protein [Populus trichocarpa] gi|118484425|gb|ABK94089.1|
           unknown [Populus trichocarpa]
           gi|222871613|gb|EEF08744.1| predicted protein [Populus
           trichocarpa]
          Length = 120

 Score =  145 bits (367), Expect = 6e-33
 Identities = 71/119 (59%), Positives = 87/119 (73%), Gaps = 5/119 (4%)
 Frame = -2

Query: 652 MATTRSYSML-VMIFITTILLVISTIDASGIHQLSWIPTR----CTGSIAECLSEENDEF 488
           MA   S+ ++   I I   + + ST+  SG H L WIP      C GSIAEC++E+ +EF
Sbjct: 1   MAKRSSWFLISATILILMAMGLSSTVQGSGDHHLGWIPATRSSVCKGSIAECMAEDGEEF 60

Query: 487 AMDSEISRRILAVTRYISYGALNRNRVPCNRRGASYYNCKAGAQANPYSRGCSAITRCR 311
            MD+EI+RRILA T+Y+SYGAL RN VPC+RRGASYYNC+ GAQANPYSRGCS ITRCR
Sbjct: 61  EMDTEINRRILATTKYVSYGALQRNNVPCSRRGASYYNCQRGAQANPYSRGCSRITRCR 119


>gb|AAO27366.1| rapid alkalinization factor 1 precursor [Populus trichocarpa x
           Populus deltoides]
          Length = 120

 Score =  145 bits (366), Expect = 8e-33
 Identities = 68/106 (64%), Positives = 81/106 (76%), Gaps = 4/106 (3%)
 Frame = -2

Query: 616 IFITTILLVISTIDASGIHQLSWIPTR----CTGSIAECLSEENDEFAMDSEISRRILAV 449
           I I   + + ST+  SG H L WIP      C GSIAEC++E+ +EF MD+EI+RRILA 
Sbjct: 14  ILILMAMGLSSTVQGSGDHHLGWIPATRSSVCKGSIAECMAEDGEEFEMDTEINRRILAT 73

Query: 448 TRYISYGALNRNRVPCNRRGASYYNCKAGAQANPYSRGCSAITRCR 311
           T+Y+SYGAL RN VPC+RRGASYYNC+ GAQANPYSRGCS ITRCR
Sbjct: 74  TKYVSYGALQRNNVPCSRRGASYYNCQRGAQANPYSRGCSRITRCR 119


>emb|CBI26076.3| unnamed protein product [Vitis vinifera]
          Length = 152

 Score =  145 bits (366), Expect = 8e-33
 Identities = 75/124 (60%), Positives = 90/124 (72%), Gaps = 5/124 (4%)
 Frame = -2

Query: 667 RKTISMATTRSYSMLVMIFITTILLVISTIDASGIH---QLSWIPTR--CTGSIAECLSE 503
           R+   M  + ++ ++  I    ++L  S +D SG H   QL WIP R  C GSIAECL+ 
Sbjct: 30  RREAKMGNSSAFVLICAIMAVHMVLTSSAVDFSGDHLQFQLGWIPARSACQGSIAECLAG 89

Query: 502 ENDEFAMDSEISRRILAVTRYISYGALNRNRVPCNRRGASYYNCKAGAQANPYSRGCSAI 323
           E  EF MDSEI+RRILA  RYISYGAL+RN VPC+RRGASYYNC+ GAQANPY+RGCSAI
Sbjct: 90  E--EFEMDSEINRRILASKRYISYGALSRNSVPCSRRGASYYNCRPGAQANPYTRGCSAI 147

Query: 322 TRCR 311
           TRCR
Sbjct: 148 TRCR 151


>ref|XP_002512426.1| RALFL33, putative [Ricinus communis] gi|223548387|gb|EEF49878.1|
           RALFL33, putative [Ricinus communis]
          Length = 121

 Score =  144 bits (362), Expect = 2e-32
 Identities = 72/116 (62%), Positives = 81/116 (69%), Gaps = 5/116 (4%)
 Frame = -2

Query: 643 TRSYSMLVMIFITTILLVISTIDASGIHQLSWIPT-----RCTGSIAECLSEENDEFAMD 479
           T  + M    FI  ++     + ASG H L WIPT      C GSIAECL+   +EF MD
Sbjct: 6   TSCFLMCATTFILILIAASPAVQASGDH-LGWIPTIRSSSTCKGSIAECLASNGEEFEMD 64

Query: 478 SEISRRILAVTRYISYGALNRNRVPCNRRGASYYNCKAGAQANPYSRGCSAITRCR 311
           SE SRRILA T+YISYGAL RN VPC+RRGASYYNC+ GAQANPYSRGCS ITRCR
Sbjct: 65  SETSRRILATTKYISYGALQRNSVPCSRRGASYYNCQPGAQANPYSRGCSTITRCR 120


>ref|XP_002321018.1| predicted protein [Populus trichocarpa] gi|222861791|gb|EEE99333.1|
           predicted protein [Populus trichocarpa]
          Length = 105

 Score =  144 bits (362), Expect = 2e-32
 Identities = 66/106 (62%), Positives = 85/106 (80%), Gaps = 3/106 (2%)
 Frame = -2

Query: 619 MIFITTILLVISTIDASGIHQLSWIPTR---CTGSIAECLSEENDEFAMDSEISRRILAV 449
           ++ ++ +++  ST+DAS  H L+W+PTR   C G++AEC+   NDEF MDSEI+RRILA 
Sbjct: 1   VLLLSALIISSSTVDASEDHNLNWVPTRARGCQGTVAECMG--NDEFEMDSEINRRILAT 58

Query: 448 TRYISYGALNRNRVPCNRRGASYYNCKAGAQANPYSRGCSAITRCR 311
           + YISY AL +N VPC++RGASYYNCK GA+ANPYSRGCSAITRCR
Sbjct: 59  SNYISYDALGKNNVPCSQRGASYYNCKTGAEANPYSRGCSAITRCR 104


Top