BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010362
         (1072 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003574931.1| PREDICTED: uncharacterized protein LOC100825...   234   2e-59
sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig ...   232   1e-58
ref|NP_001045956.1| Os02g0158400 [Oryza sativa Japonica Group] g...   231   2e-58
gb|AGE44298.1| whirly transcription factor domain containing pro...   228   3e-57
gb|AFW66475.1| DNA binding protein isoform 1 [Zea mays] gi|41392...   226   7e-57

>ref|XP_003574931.1| PREDICTED: uncharacterized protein LOC100825843 [Brachypodium
           distachyon]
          Length = 231

 Score =  234 bits (598), Expect = 2e-59
 Identities = 120/218 (55%), Positives = 157/218 (72%), Gaps = 10/218 (4%)
 Frame = -3

Query: 950 KVSDSMNAIWTRSFTSQ-AVSAGSRTGYVNAD------YSIFKGKAALLTAPKVPTFNQT 792
           KVSD  + +W+ S T + A+S  +     NA       Y++FKGKAAL  +P +P F + 
Sbjct: 14  KVSDLKDVLWSGSVTFEHALSTSAANVDENASARKFASYTVFKGKAALSISPILPNFTKI 73

Query: 791 NN---RIDKKGCIMLTFMPAVGERKYDYERRQVFALSPTEVGSLISLESGKSCEFFHDPS 621
            +   R+ K G +MLTF PAVG+R+YDY ++Q+FALSPTEVGSLISL S +SCEFFHDPS
Sbjct: 74  ESGGSRVKKNGSVMLTFFPAVGQRQYDYSKKQLFALSPTEVGSLISLGSAESCEFFHDPS 133

Query: 620 MKSSNAGQVRKSLSVSPYGEDSGFFFNLSVVNNIQKTNERFSVPVSKAEFAVLRTAFSYI 441
           MKSS+ GQV+KSLS++P G D+G+F N++V+NN+QKTNER SVPV+KAEFAV+RTA SY 
Sbjct: 134 MKSSHEGQVKKSLSITPLGNDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTALSYA 193

Query: 440 LPHIMGWDQYTKQVQTSGDLNSIRLLEKRPSPNSEWDR 327
           LPHIMGWDQ       S    + +   +RP P+SEW+R
Sbjct: 194 LPHIMGWDQALTSHPQSPTAPASKPRVERPHPDSEWER 231


>sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2, mitochondrial;
            AltName: Full=Protein WHIRLY 2; Short=StWHY2; Flags:
            Precursor gi|298359665|gb|ADI77438.1| Why2 protein
            [Solanum tuberosum]
          Length = 238

 Score =  232 bits (591), Expect = 1e-58
 Identities = 124/242 (51%), Positives = 169/242 (69%), Gaps = 13/242 (5%)
 Frame = -3

Query: 1013 MMKLTQLLRHRSNVTEKVLPGKVSDSMNAIWTRSFTSQA----------VSAGSRTGYVN 864
            M+K+++LL  R+ +  K LPG+      +IW  +  + A            AG R G V 
Sbjct: 1    MLKVSRLLHPRNQLLHKKLPGECVKG--SIWQHAINTFAGFSTVRQNVVADAGKREGRVF 58

Query: 863  ADYSIFKGKAALLTAPKVPTFNQTNN---RIDKKGCIMLTFMPAVGERKYDYERRQVFAL 693
            A YS+FKGKAAL   P++PTFN+ ++   +++++G IMLTF P+VGERKYD+E+RQ+FAL
Sbjct: 59   APYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFAL 118

Query: 692  SPTEVGSLISLESGKSCEFFHDPSMKSSNAGQVRKSLSVSPYGEDSGFFFNLSVVNNIQK 513
            S TEVGSLIS+ +  S EFFHDPSM SSNAGQVRKSLS+ P  + SG+F +LSVVNN  K
Sbjct: 119  SATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLK 178

Query: 512  TNERFSVPVSKAEFAVLRTAFSYILPHIMGWDQYTKQVQTSGDLNSIRLLEKRPSPNSEW 333
            TN+RF+VPV+ AEFAV+RTAFS+ LPHIMGWD++T +   S   +  +++ +     +EW
Sbjct: 179  TNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNRPSESISQSPSKVVPQ--LMEAEW 236

Query: 332  DR 327
            DR
Sbjct: 237  DR 238


>ref|NP_001045956.1| Os02g0158400 [Oryza sativa Japonica Group]
           gi|50251252|dbj|BAD28032.1| putative Chain C, Structure
           Of The Plant Transcriptional Regulator Pbf-2 [Oryza
           sativa Japonica Group] gi|50252182|dbj|BAD28177.1|
           putative Chain C, Structure Of The Plant Transcriptional
           Regulator Pbf-2 [Oryza sativa Japonica Group]
           gi|113535487|dbj|BAF07870.1| Os02g0158400 [Oryza sativa
           Japonica Group] gi|215692593|dbj|BAG88013.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215704516|dbj|BAG94149.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215740785|dbj|BAG96941.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218190103|gb|EEC72530.1| hypothetical protein
           OsI_05924 [Oryza sativa Indica Group]
           gi|222622212|gb|EEE56344.1| hypothetical protein
           OsJ_05450 [Oryza sativa Japonica Group]
          Length = 228

 Score =  231 bits (590), Expect = 2e-58
 Identities = 120/216 (55%), Positives = 157/216 (72%), Gaps = 8/216 (3%)
 Frame = -3

Query: 950 KVSDSMNAIWTRSFTSQ----AVSAGSRT-GYVNADYSIFKGKAALLTAPKVPTFNQTNN 786
           +V+D  +A+W+ S T Q      +A   T G   A Y++FKGKAAL   P +P+F++  +
Sbjct: 14  RVTDLKDALWSGSLTFQHALSTFAADENTSGRKFASYTVFKGKAALSMQPILPSFSKLES 73

Query: 785 ---RIDKKGCIMLTFMPAVGERKYDYERRQVFALSPTEVGSLISLESGKSCEFFHDPSMK 615
              R++K G +MLTF PAVG+RKYDY ++Q+FALSPTEVGSLISL   +SCEFFHDPSMK
Sbjct: 74  GGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMK 133

Query: 614 SSNAGQVRKSLSVSPYGEDSGFFFNLSVVNNIQKTNERFSVPVSKAEFAVLRTAFSYILP 435
           SS+ GQV+KSLSV+P G DSG+F N++V+NN+QKT ER S+P+SKAEF V+RTA S+ LP
Sbjct: 134 SSHEGQVKKSLSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALSFALP 193

Query: 434 HIMGWDQYTKQVQTSGDLNSIRLLEKRPSPNSEWDR 327
           HI+GWDQ     Q S    S   +E RP P+SEW+R
Sbjct: 194 HILGWDQALTNHQPSPSPASKPRVE-RPHPDSEWER 228


>gb|AGE44298.1| whirly transcription factor domain containing protein [Musa AB
           Group]
          Length = 245

 Score =  228 bits (580), Expect = 3e-57
 Identities = 118/214 (55%), Positives = 155/214 (72%), Gaps = 4/214 (1%)
 Frame = -3

Query: 956 PGKVSDSMNAIWTRSFTSQAVSAGSRTGYVNADYSIFKGKAALLTAPKVPTFNQTNN--- 786
           PG V+D  +++  R   S   S+  R  YV  +Y++FKGKAAL  +P +PTF + ++   
Sbjct: 37  PGLVNDGSSSV--RPPFSPTGSSSVRR-YV--EYTVFKGKAALSVSPILPTFREVDSGVS 91

Query: 785 RIDKKGCIMLTFMPAVGERKYDYERRQVFALSPTEVGSLISLESGKSCEFFHDPSMKSSN 606
           R+ KKGC++LTF PA+G+RKYD++++Q FALSPTEVGSLI L   +SCEFFHDPSMKSS 
Sbjct: 92  RVHKKGCVILTFWPAIGQRKYDWQKKQAFALSPTEVGSLIGLGPAESCEFFHDPSMKSSL 151

Query: 605 AGQVRKSLSVSPYGEDSGFFFNLSVVNNIQKTNERFSVPVSKAEFAVLRTAFSYILPHIM 426
            GQV+KSLS+SP  + +G+  NLSVVNNIQKTNERFS+PVSKAEF  +RT FSY+LPHIM
Sbjct: 152 EGQVKKSLSISPLNDKAGYLLNLSVVNNIQKTNERFSLPVSKAEFTAIRTVFSYVLPHIM 211

Query: 425 GWDQ-YTKQVQTSGDLNSIRLLEKRPSPNSEWDR 327
           GW Q  + Q  ++        +E+RP P+ EW R
Sbjct: 212 GWSQAASPQPPSTATHTPKEQIEERPDPSLEWGR 245


>gb|AFW66475.1| DNA binding protein isoform 1 [Zea mays]
           gi|413926544|gb|AFW66476.1| DNA binding protein isoform
           2 [Zea mays]
          Length = 274

 Score =  226 bits (576), Expect = 7e-57
 Identities = 117/216 (54%), Positives = 153/216 (70%), Gaps = 11/216 (5%)
 Frame = -3

Query: 941 DSMNAIWTRSFT-SQAVSA------GSRTGYVNADYSIFKGKAALLTAPKVPTFNQTNN- 786
           D   ++W+ S T  QAVS       G+ +G   A Y++FKGKAAL   P +P+F++  + 
Sbjct: 59  DLKESLWSGSLTFQQAVSTAATNLDGNLSGKKFASYTVFKGKAALSIHPILPSFSKLESG 118

Query: 785 --RIDKKGCIMLTFMPAVGERKYDYERRQVFALSPTEVGSLISLESGKSCEFFHDPSMKS 612
             R+ K G +MLTF PAVG+RKYDY ++Q+FALSPTEVGSLISL   +SCEFFHDPSMKS
Sbjct: 119 GSRVSKNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKS 178

Query: 611 SNAGQVRKSLSVSPYGEDSGFFFNLSVVNNIQKTNERFSVPVSKAEFAVLRTAFSYILPH 432
           SN G V+KSLS++P G DSG+F N++VVN+ ++TN+R SVP++KAEFAV+RT  S+ LPH
Sbjct: 179 SNEGTVKKSLSITPLGSDSGYFVNITVVNSAERTNDRLSVPITKAEFAVIRTTLSFALPH 238

Query: 431 IMGWDQ-YTKQVQTSGDLNSIRLLEKRPSPNSEWDR 327
           IMGWDQ  T          S R   +RP P+SEW+R
Sbjct: 239 IMGWDQALTNHHPAPAPPASSRPTVERPHPDSEWER 274