BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010158
         (375 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298340.1| predicted protein [Populus trichocarpa] gi|2...    67   7e-20
ref|XP_003543527.1| PREDICTED: transcription initiation factor I...    64   6e-19
ref|XP_003543528.1| PREDICTED: transcription initiation factor I...    64   6e-19
ref|XP_003537974.1| PREDICTED: uncharacterized protein LOC100800...    63   7e-19
emb|CAN83895.1| hypothetical protein VITISV_039114 [Vitis vinifera]    62   1e-18

>ref|XP_002298340.1| predicted protein [Populus trichocarpa] gi|222845598|gb|EEE83145.1|
           predicted protein [Populus trichocarpa]
          Length = 409

 Score = 66.6 bits (161), Expect(2) = 7e-20
 Identities = 40/77 (51%), Positives = 50/77 (64%), Gaps = 4/77 (5%)
 Frame = -3

Query: 220 TLLPGTAHTHLLGTVQTPLPRNVQTPLPGSGEN-LMYQLPT--PSDYSSG-HESVTLNEV 53
           T LPG+A T L G VQTPLP NV TPLPGS +N  MY + T   SDY +   ++    +V
Sbjct: 99  TPLPGSAQTPLPGNVQTPLPGNVPTPLPGSVDNSSMYNISTGSSSDYPTPVSDAGGSTDV 158

Query: 52  KLGMPSQYMQTPSPWMN 2
           K G PS +MQ+PSP M+
Sbjct: 159 KAGRPSHFMQSPSPLMH 175



 Score = 55.5 bits (132), Expect(2) = 7e-20
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = -1

Query: 339 TPVHDLNVPYEPTEDYETPTAKMLFPP 259
           TPVHDLNVPYE TE+YETPTA++LFPP
Sbjct: 72  TPVHDLNVPYEGTEEYETPTAEILFPP 98


>ref|XP_003543527.1| PREDICTED: transcription initiation factor IIA large subunit-like
           isoform 1 [Glycine max]
          Length = 391

 Score = 63.9 bits (154), Expect(2) = 6e-19
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
 Frame = -3

Query: 172 TPLPRNVQTPLPGSGENLMYQLPT-PSDY-SSGHESVTLNEVKLGMPSQYMQTPSPWMN 2
           TPL   +QTPLPG+G+N  Y +PT PSDY SSG+++    + K   P+ YMQ+PSPWMN
Sbjct: 99  TPLQTPIQTPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKGARPAPYMQSPSPWMN 157



 Score = 55.1 bits (131), Expect(2) = 6e-19
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = -1

Query: 339 TPVHDLNVPYEPTEDYETPTAKMLFPP 259
           TPVHDLNVPYE T++YETPTA MLFPP
Sbjct: 72  TPVHDLNVPYEGTDEYETPTADMLFPP 98


>ref|XP_003543528.1| PREDICTED: transcription initiation factor IIA large subunit-like
           isoform 2 [Glycine max]
          Length = 384

 Score = 63.9 bits (154), Expect(2) = 6e-19
 Identities = 32/59 (54%), Positives = 42/59 (71%), Gaps = 2/59 (3%)
 Frame = -3

Query: 172 TPLPRNVQTPLPGSGENLMYQLPT-PSDY-SSGHESVTLNEVKLGMPSQYMQTPSPWMN 2
           TPL   +QTPLPG+G+N  Y +PT PSDY SSG+++    + K   P+ YMQ+PSPWMN
Sbjct: 99  TPLQTPIQTPLPGTGDNSTYNIPTGPSDYPSSGNDTGGNADGKGARPAPYMQSPSPWMN 157



 Score = 55.1 bits (131), Expect(2) = 6e-19
 Identities = 23/27 (85%), Positives = 25/27 (92%)
 Frame = -1

Query: 339 TPVHDLNVPYEPTEDYETPTAKMLFPP 259
           TPVHDLNVPYE T++YETPTA MLFPP
Sbjct: 72  TPVHDLNVPYEGTDEYETPTADMLFPP 98


>ref|XP_003537974.1| PREDICTED: uncharacterized protein LOC100800601 [Glycine max]
          Length = 392

 Score = 62.8 bits (151), Expect(2) = 7e-19
 Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 3/60 (5%)
 Frame = -3

Query: 172 TPLPRNVQTPLPGSGENLMYQLPT-PSDY-SSGHESVTLNEVKLGMPSQYMQ-TPSPWMN 2
           TPL   +QTPLPG+ +N MY +PT PSDY S+G+E    NE+K G P  YMQ  PSPW N
Sbjct: 99  TPLQTPLQTPLPGTVDNSMYNIPTGPSDYPSAGNEPGANNEIKGGRPGPYMQPPPSPWTN 158



 Score = 55.8 bits (133), Expect(2) = 7e-19
 Identities = 23/27 (85%), Positives = 26/27 (96%)
 Frame = -1

Query: 339 TPVHDLNVPYEPTEDYETPTAKMLFPP 259
           TPVHDLN+PYE TE+YETPTA+MLFPP
Sbjct: 72  TPVHDLNMPYEGTEEYETPTAEMLFPP 98


>emb|CAN83895.1| hypothetical protein VITISV_039114 [Vitis vinifera]
          Length = 630

 Score = 61.6 bits (148), Expect(2) = 1e-18
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
 Frame = -3

Query: 172 TPLPRNVQTPLPGSGENLMYQLPT-PSDYSSGHESVTLNEVKLGMPSQYMQTPSPWM 5
           TPL   +QTPLPG G+N MY +PT P++Y +  +     ++K G P  YM  PSPWM
Sbjct: 102 TPLQTPIQTPLPGMGDNSMYNIPTGPTEYPAAQDGGGATDMKSGRPPSYMPPPSPWM 158



 Score = 56.2 bits (134), Expect(2) = 1e-18
 Identities = 26/36 (72%), Positives = 30/36 (83%)
 Frame = -1

Query: 366 TNGATGVDPTPVHDLNVPYEPTEDYETPTAKMLFPP 259
           T+GA    P PVHDLNVPYE TE+YETPTA++LFPP
Sbjct: 67  TSGAPAPTP-PVHDLNVPYEGTEEYETPTAEILFPP 101