BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010154
         (552 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containi...   100   3e-19
emb|CBI30729.3| unnamed protein product [Vitis vinifera]              100   3e-19
ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containi...    88   8e-16
ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containi...    87   2e-15
ref|NP_193619.1| pentatricopeptide repeat-containing protein [Ar...    87   2e-15

>ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
 Frame = -1

Query: 426 STLRDIQQFHAHTIKIGQFHHN-PTTRLVXXXXXXXXXXXXXSINDVYYTLSLLNHHQTT 250
           +++ ++ Q HAH +K G  H     +RL+               + ++  +         
Sbjct: 18  TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP-------N 70

Query: 249 PCSFLYNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTFTFLINSCARLSALEQGEQL 70
           P S+++NT+IRA+     P+ A  +F+QMLH  + PD +TFTF + SC   S +E+G Q+
Sbjct: 71  PNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQI 130

Query: 69  HCFAFKTGLISDLFLQNSLIHMY 1
           H    KTGL  DLF+QN+LIH+Y
Sbjct: 131 HGHVLKTGLGDDLFIQNTLIHLY 153



 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 25/78 (32%), Positives = 44/78 (56%)
 Frame = -1

Query: 234 YNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTFTFLINSCARLSALEQGEQLHCFAF 55
           +N +I  ++   +  +  +LF  M H  + PDN T   ++++CA + AL QGE +H +  
Sbjct: 239 WNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYID 298

Query: 54  KTGLISDLFLQNSLIHMY 1
           K G+  D F+  +L+ MY
Sbjct: 299 KNGISIDGFVATALVDMY 316


>emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 49/143 (34%), Positives = 78/143 (54%), Gaps = 1/143 (0%)
 Frame = -1

Query: 426 STLRDIQQFHAHTIKIGQFHHN-PTTRLVXXXXXXXXXXXXXSINDVYYTLSLLNHHQTT 250
           +++ ++ Q HAH +K G  H     +RL+               + ++  +         
Sbjct: 18  TSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIPYAHSIFSRIP-------N 70

Query: 249 PCSFLYNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTFTFLINSCARLSALEQGEQL 70
           P S+++NT+IRA+     P+ A  +F+QMLH  + PD +TFTF + SC   S +E+G Q+
Sbjct: 71  PNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEGRQI 130

Query: 69  HCFAFKTGLISDLFLQNSLIHMY 1
           H    KTGL  DLF+QN+LIH+Y
Sbjct: 131 HGHVLKTGLGDDLFIQNTLIHLY 153



 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 25/78 (32%), Positives = 44/78 (56%)
 Frame = -1

Query: 234 YNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTFTFLINSCARLSALEQGEQLHCFAF 55
           +N +I  ++   +  +  +LF  M H  + PDN T   ++++CA + AL QGE +H +  
Sbjct: 209 WNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYID 268

Query: 54  KTGLISDLFLQNSLIHMY 1
           K G+  D F+  +L+ MY
Sbjct: 269 KNGISIDGFVATALVDMY 286


>ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score = 88.2 bits (217), Expect = 8e-16
 Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
 Frame = -1

Query: 423 TLRDIQQFHAHTIKIGQFHHNPT-TRLVXXXXXXXXXXXXXSINDVYYTLSLLNHHQTTP 247
           ++ + +Q HAH +K+G F+ +   + LV                 + Y  S+    +  P
Sbjct: 42  SMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRW-------GSMEYACSIFRQIEE-P 93

Query: 246 CSFLYNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTFTFLINSCARLSALEQGEQLH 67
            SF YNT+IR        ++A LL+ +ML R + PDNFT+ F++ +C+ L AL++G Q+H
Sbjct: 94  GSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIH 153

Query: 66  CFAFKTGLISDLFLQNSLIHMY 1
              FK GL  D+F+QN LI+MY
Sbjct: 154 AHVFKAGLEGDVFVQNGLINMY 175


>ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
           gi|449529868|ref|XP_004171920.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 47/141 (33%), Positives = 77/141 (54%)
 Frame = -1

Query: 423 TLRDIQQFHAHTIKIGQFHHNPTTRLVXXXXXXXXXXXXXSINDVYYTLSLLNHHQTTPC 244
           ++R  +Q HAH IK G   HN    L                 D+ Y +SL N  +  P 
Sbjct: 41  SIRTFKQIHAHIIKTGL--HNTLFALSKLIEFSAVSRS----GDISYAISLFNSIEE-PN 93

Query: 243 SFLYNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTFTFLINSCARLSALEQGEQLHC 64
            F++N++IR  +    P  A + F +M++  + P+++TF FL+ SCA+L++  +G+Q+H 
Sbjct: 94  LFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHA 153

Query: 63  FAFKTGLISDLFLQNSLIHMY 1
              K G +SD+F+  SLI+MY
Sbjct: 154 HVLKLGFVSDVFIHTSLINMY 174


>ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75098703|sp|O49399.2|PP321_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g18840 gi|5738365|emb|CAA16741.2| putative protein
           [Arabidopsis thaliana] gi|7268678|emb|CAB78886.1|
           putative protein [Arabidopsis thaliana]
           gi|332658697|gb|AEE84097.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 545

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 48/142 (33%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
 Frame = -1

Query: 423 TLRDIQQFHAHTIKIGQFHHN-PTTRLVXXXXXXXXXXXXXSINDVYYTLSLLNHHQTTP 247
           +L +IQQ HA  +K G FH     ++LV                 V Y  S+LN   + P
Sbjct: 51  SLTEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEP------KTVSYAHSILNRIGS-P 103

Query: 246 CSFLYNTLIRAFNQLHQPQQAFLLFYQMLHRCLFPDNFTFTFLINSCARLSALEQGEQLH 67
             F +N++IRA+     P+ A  +F +ML   +FPD ++FTF++ +CA     E+G Q+H
Sbjct: 104 NGFTHNSVIRAYANSSTPEVALTVFREMLLGPVFPDKYSFTFVLKACAAFCGFEEGRQIH 163

Query: 66  CFAFKTGLISDLFLQNSLIHMY 1
               K+GL++D+F++N+L+++Y
Sbjct: 164 GLFIKSGLVTDVFVENTLVNVY 185