BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010085
         (792 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK92584.1|AC074354_18 Putative retroelement [Oryza sativa Ja...   160   4e-37
emb|CAN69143.1| hypothetical protein VITISV_027770 [Vitis vinifera]   158   1e-36
gb|AFU25705.1| gag-pol precursor [Castanea mollissima]                157   2e-36
gb|ABF95613.1| retrotransposon protein, putative, Ty3-gypsy subc...   155   7e-36
gb|AAL31077.1|AC091749_6 putative polyprotein [Oryza sativa Japo...   155   1e-35

>gb|AAK92584.1|AC074354_18 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1705

 Score =  160 bits (404), Expect = 4e-37
 Identities = 100/262 (38%), Positives = 143/262 (54%), Gaps = 4/262 (1%)
 Frame = +3

Query: 3    DCEMALQQLKKYLVSPPILTSPSTGQPSGIYLAATTQAVSAVLF--VDDG-RPVFFISKT 173
            +C+ A  +LK+YL SPP L SP+ G    +YLAA+  AV+A L    D G +PV+F+S+ 
Sbjct: 1088 ECQAAFDELKQYLQSPPALISPAPGSELLLYLAASPVAVNAALVQETDSGQKPVYFVSEA 1147

Query: 174  LTRAESRYSKMEKIALALVHAARRLKPYFQGRLVRVYTEYPLRKIFRNAQESSRLAEWES 353
            L  A++RY +MEK+A ALV A+R+LK YFQ   V V ++YPL +I    + +SRL++W +
Sbjct: 1148 LQGAKTRYIEMEKLAYALVMASRKLKYYFQAHKVIVPSQYPLGEILWGKEVTSRLSKWGA 1207

Query: 354  YLNAYSIVFESRTTEKGHALASLIAXXXXXXXXXXXXLRQEESMEDILPPITGGDEDQLE 533
             L+ + + F +RTT K   LA  +A                                   
Sbjct: 1208 ELSPFDLHFVARTTVKSQVLADFVAPE--------------------------------- 1234

Query: 534  NAIPKPID-LCIVYSDGSHSKSGSGIGCVFVKPGGEKIGKSVRLGFAASNNEAEYEDAIC 710
               P+P++ L ++YSDGS S  G+GI  V   P G  I  + RL F  +NN AEYE  + 
Sbjct: 1235 ---PEPVEQLWVMYSDGSWSHKGAGIAAVLNSPNGVPIRYAARLQFDTTNNAAEYEAILL 1291

Query: 711  ALRTTLTLGARKLQLYTDSRLV 776
             LR    LG R+L + TDS+LV
Sbjct: 1292 GLRKAKALGIRRLLIRTDSKLV 1313


>emb|CAN69143.1| hypothetical protein VITISV_027770 [Vitis vinifera]
          Length = 622

 Score =  158 bits (400), Expect = 1e-36
 Identities = 95/261 (36%), Positives = 139/261 (53%), Gaps = 4/261 (1%)
 Frame = +3

Query: 6   CEMALQQLKKYLVSPPILTSPSTGQPSGIYLAATTQAVSAVLFVD----DGRPVFFISKT 173
           C+ A +++K+YL  PPIL+SP  G+   +YLA    AVS VL       + RPV+FISK 
Sbjct: 144 CQNAFEEIKRYLSQPPILSSPQPGERLYLYLAVIDWAVSVVLLRSLSPREQRPVYFISKA 203

Query: 174 LTRAESRYSKMEKIALALVHAARRLKPYFQGRLVRVYTEYPLRKIFRNAQESSRLAEWES 353
           L   E+RYS+ME+ ALAL  AA++L+PYFQ   + V T  PLR +      + R+  W  
Sbjct: 204 LADTETRYSRMEQTALALRTAAQKLRPYFQAHPITVLTNQPLRNVLHKPDITGRMLRWVI 263

Query: 354 YLNAYSIVFESRTTEKGHALASLIAXXXXXXXXXXXXLRQEESMEDILPPITGGDEDQLE 533
            L+ Y I ++ R + KG  +A  IA                      LP     D++   
Sbjct: 264 ELSEYGIDYQPRLSLKGQVMADFIA---------------------XLPEARALDKES-- 300

Query: 534 NAIPKPIDLCIVYSDGSHSKSGSGIGCVFVKPGGEKIGKSVRLGFAASNNEAEYEDAICA 713
                P D   ++ DG+   SGSG+  +   P GE++ +S+RL F  SNN+AEYE  +  
Sbjct: 301 ----TPDDWWSLHVDGASRLSGSGVELLLKAPTGERLEQSIRLDFPTSNNKAEYEAILSG 356

Query: 714 LRTTLTLGARKLQLYTDSRLV 776
           L    TL A K+++++DS+LV
Sbjct: 357 LSLATTLNASKVKIHSDSQLV 377


>gb|AFU25705.1| gag-pol precursor [Castanea mollissima]
          Length = 1106

 Score =  157 bits (398), Expect = 2e-36
 Identities = 96/261 (36%), Positives = 141/261 (54%), Gaps = 3/261 (1%)
 Frame = +3

Query: 3    DCEMALQQLKKYLVSPPILTSPSTGQPSGIYLAATTQAVSAVLFV-DDG--RPVFFISKT 173
            +C +A + L++YL +P IL+ P   +    YLA    AVS VL   DDG  +P+++ISK+
Sbjct: 363  ECNLAFEDLRQYLANPLILSRPEKKEVLYAYLAVMNYAVSLVLIRNDDGVQKPIYYISKS 422

Query: 174  LTRAESRYSKMEKIALALVHAARRLKPYFQGRLVRVYTEYPLRKIFRNAQESSRLAEWES 353
            L  AE RY  +EK  LA+VHA R+L  YFQ   + V T+ PL+ I R    + R+A+W +
Sbjct: 423  LQEAERRYLPLEKALLAVVHATRKLPHYFQAHTIVVLTQLPLQAIMRKLDYTGRVAKWGT 482

Query: 354  YLNAYSIVFESRTTEKGHALASLIAXXXXXXXXXXXXLRQEESMEDILPPITGGDEDQLE 533
             L AY + +  RT  KG  L   +A             +QE++M  ++    G       
Sbjct: 483  KLGAYDVKYMPRTAIKGQDLVDFVA------EFTESDTKQEDAMMTVMTIGLGN------ 530

Query: 534  NAIPKPIDLCIVYSDGSHSKSGSGIGCVFVKPGGEKIGKSVRLGFAASNNEAEYEDAICA 713
                  + L  V +DG+ ++ G+GIG V + P    + KS+RLGF A+NNEAEYE  +  
Sbjct: 531  ------VPLWEVCTDGASNRKGAGIGVVLITPEKLVMEKSLRLGFIATNNEAEYEALLAG 584

Query: 714  LRTTLTLGARKLQLYTDSRLV 776
             +    LG   ++LY DSRLV
Sbjct: 585  AQMVRHLGGEVVELYCDSRLV 605


>gb|ABF95613.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1071

 Score =  155 bits (393), Expect = 7e-36
 Identities = 99/262 (37%), Positives = 143/262 (54%), Gaps = 4/262 (1%)
 Frame = +3

Query: 3    DCEMALQQLKKYLVSPPILTSPSTGQPSGIYLAATTQAVSAVLF--VDDG-RPVFFISKT 173
            +C+ A  +LK+YL SPP L SP+ G    +YLAA+  AVSA L   ++ G +PV+F+S+ 
Sbjct: 439  ECQAAFDELKQYLQSPPALISPAPGIEPLLYLAASLVAVSAALVQEIESGQKPVYFVSEE 498

Query: 174  LTRAESRYSKMEKIALALVHAARRLKPYFQGRLVRVYTEYPLRKIFRNAQESSRLAEWES 353
            L  A++RY +MEK+  ALV A+R+LK YFQ   V V ++YPL +I R  + + RL +W +
Sbjct: 499  LQGAKTRYIEMEKLTYALVMASRKLKHYFQPHRVIVPSQYPLGEILRGKEVTGRLRKWAA 558

Query: 354  YLNAYSIVFESRTTEKGHALASLIAXXXXXXXXXXXXLRQEESMEDILPPITGGDEDQLE 533
             L+ + + F +RT  K   LA  +A                E     +P           
Sbjct: 559  ELSPFDLHFVARTAVKSQVLADFVA----------------EWTPAFVPE---------- 592

Query: 534  NAIPKPIDL-CIVYSDGSHSKSGSGIGCVFVKPGGEKIGKSVRLGFAASNNEAEYEDAIC 710
               P+P++   ++YSDGS S  G+GI  V   P G  I  + RL F  +NN AEYE  + 
Sbjct: 593  ---PEPVEQPWMMYSDGSWSHKGAGIAAVLTSPSGVPIRYAARLQFNTTNNAAEYEAILL 649

Query: 711  ALRTTLTLGARKLQLYTDSRLV 776
             LR    LG R+L + TDS+LV
Sbjct: 650  GLRKEKALGIRRLLIRTDSKLV 671


>gb|AAL31077.1|AC091749_6 putative polyprotein [Oryza sativa Japonica Group]
            gi|22655740|gb|AAN04157.1| Putative polyprotein [Oryza
            sativa Japonica Group] gi|31431207|gb|AAP53022.1|
            retrotransposon protein, putative, Ty3-gypsy subclass
            [Oryza sativa Japonica Group]
          Length = 1265

 Score =  155 bits (391), Expect = 1e-35
 Identities = 96/261 (36%), Positives = 137/261 (52%), Gaps = 3/261 (1%)
 Frame = +3

Query: 3    DCEMALQQLKKYLVSPPILTSPSTGQPSGIYLAATTQAVSAVLFVDDG---RPVFFISKT 173
            +C+ A  +LK+YL SPP L SP  G    +YLAA+  AVSA L  +     +PV+F+S+ 
Sbjct: 534  ECQAAFDELKQYLQSPPALISPPPGSELLLYLAASPVAVSAALVQETKFGQKPVYFVSEA 593

Query: 174  LTRAESRYSKMEKIALALVHAARRLKPYFQGRLVRVYTEYPLRKIFRNAQESSRLAEWES 353
            L  A++RY +MEK+A ALV A+R+LK YFQ   V V ++YPL +I R  + + RL++W +
Sbjct: 594  LQGAKTRYIEMEKLAYALVMASRKLKHYFQAHKVIVPSQYPLGEILRGKEVTGRLSKWAA 653

Query: 354  YLNAYSIVFESRTTEKGHALASLIAXXXXXXXXXXXXLRQEESMEDILPPITGGDEDQLE 533
             L+ + + F +R+  K   LA  +A                        P+   D +  E
Sbjct: 654  ELSPFDLHFVARSAIKSQVLADFVAEW---------------------TPVLAPDPEPAE 692

Query: 534  NAIPKPIDLCIVYSDGSHSKSGSGIGCVFVKPGGEKIGKSVRLGFAASNNEAEYEDAICA 713
                      ++ SDGS S  G GI  V   P G  I  + RL F  +NN AEYE  +  
Sbjct: 693  -------QFWVMCSDGSWSHKGPGIAAVLFSPNGVPIRYAARLQFDTTNNAAEYEAVLLG 745

Query: 714  LRTTLTLGARKLQLYTDSRLV 776
            LR    LG R+L + TDS+LV
Sbjct: 746  LRKAKALGVRRLLIRTDSKLV 766