BLASTX nr result

ID: Coptis24_contig00010002 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00010002
         (632 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281677.1| PREDICTED: 65-kDa microtubule-associated pro...   136   4e-30
emb|CAN64202.1| hypothetical protein VITISV_016187 [Vitis vinifera]   136   4e-30
ref|XP_002521913.1| PLE, putative [Ricinus communis] gi|22353895...   134   2e-29
gb|ACQ90586.1| putative microtubule-associated protein [Eutrema ...   132   5e-29
ref|NP_001030945.1| microtubule-associated protein 6 [Arabidopsi...   127   2e-27

>ref|XP_002281677.1| PREDICTED: 65-kDa microtubule-associated protein 6 [Vitis vinifera]
           gi|297737577|emb|CBI26778.3| unnamed protein product
           [Vitis vinifera]
          Length = 599

 Score =  136 bits (342), Expect = 4e-30
 Identities = 74/101 (73%), Positives = 84/101 (83%), Gaps = 4/101 (3%)
 Frame = -3

Query: 291 EKRPT-LKEQLASIKPLVDNLRNKKEERMRQFADVRTQIEKISGEISGYN---NDMSCSN 124
           EKR T LKEQLAS+ PLV++LR+KKEER++QFAD+R QIEKISGEISGYN   N M    
Sbjct: 96  EKRSTSLKEQLASVTPLVEDLRSKKEERLKQFADIRAQIEKISGEISGYNHHTNTMIGCL 155

Query: 123 SKEENDLSLRKLNEHQTHLHSLQKEKSDRLNKVLEYVNEVH 1
           + EE DLSLR LNE QTHL +LQKEKS+RLNKVLEYVNEVH
Sbjct: 156 TLEEQDLSLRNLNECQTHLRTLQKEKSERLNKVLEYVNEVH 196


>emb|CAN64202.1| hypothetical protein VITISV_016187 [Vitis vinifera]
          Length = 601

 Score =  136 bits (342), Expect = 4e-30
 Identities = 74/101 (73%), Positives = 84/101 (83%), Gaps = 4/101 (3%)
 Frame = -3

Query: 291 EKRPT-LKEQLASIKPLVDNLRNKKEERMRQFADVRTQIEKISGEISGYN---NDMSCSN 124
           EKR T LKEQLAS+ PLV++LR+KKEER++QFAD+R QIEKISGEISGYN   N M    
Sbjct: 111 EKRSTSLKEQLASVTPLVEDLRSKKEERLKQFADIRAQIEKISGEISGYNHHTNTMIGCL 170

Query: 123 SKEENDLSLRKLNEHQTHLHSLQKEKSDRLNKVLEYVNEVH 1
           + EE DLSLR LNE QTHL +LQKEKS+RLNKVLEYVNEVH
Sbjct: 171 TLEEQDLSLRNLNECQTHLRTLQKEKSERLNKVLEYVNEVH 211


>ref|XP_002521913.1| PLE, putative [Ricinus communis] gi|223538951|gb|EEF40549.1| PLE,
           putative [Ricinus communis]
          Length = 600

 Score =  134 bits (336), Expect = 2e-29
 Identities = 69/103 (66%), Positives = 86/103 (83%), Gaps = 4/103 (3%)
 Frame = -3

Query: 297 RAEKRPT-LKEQLASIKPLVDNLRNKKEERMRQFADVRTQIEKISGEISGYNN---DMSC 130
           + EKR + LK++LAS+ PLV++LR KKEERM+QFAD++ QIEKISGEISGYNN    +  
Sbjct: 95  QTEKRASSLKQKLASVTPLVEDLRTKKEERMKQFADIKAQIEKISGEISGYNNLNSSLIS 154

Query: 129 SNSKEENDLSLRKLNEHQTHLHSLQKEKSDRLNKVLEYVNEVH 1
           S S E+ DLSLRKLNE+QTHL +LQKEKSDRL+KV E++NEVH
Sbjct: 155 SFSLEDQDLSLRKLNEYQTHLRTLQKEKSDRLHKVFEFINEVH 197


>gb|ACQ90586.1| putative microtubule-associated protein [Eutrema halophilum]
          Length = 608

 Score =  132 bits (332), Expect = 5e-29
 Identities = 67/97 (69%), Positives = 84/97 (86%), Gaps = 4/97 (4%)
 Frame = -3

Query: 279 TLKEQLASIKPLVDNLRNKKEERMRQFADVRTQIEKISGEISGYNNDMS----CSNSKEE 112
           +LKE+LA++ PLV++LR +KEERM+QF+DV+ QIEKISGEISGY++ +S    CS + EE
Sbjct: 103 SLKEKLAAVTPLVEDLRIQKEERMKQFSDVKAQIEKISGEISGYSDHLSKTMICSLTLEE 162

Query: 111 NDLSLRKLNEHQTHLHSLQKEKSDRLNKVLEYVNEVH 1
            DL+LRKLNE+QTHL +LQKEKSDRLNKVL YVNEVH
Sbjct: 163 QDLTLRKLNEYQTHLRTLQKEKSDRLNKVLGYVNEVH 199


>ref|NP_001030945.1| microtubule-associated protein 6 [Arabidopsis thaliana]
           gi|330250423|gb|AEC05517.1| microtubule-associated
           protein 6 [Arabidopsis thaliana]
          Length = 567

 Score =  127 bits (318), Expect = 2e-27
 Identities = 65/97 (67%), Positives = 80/97 (82%), Gaps = 4/97 (4%)
 Frame = -3

Query: 279 TLKEQLASIKPLVDNLRNKKEERMRQFADVRTQIEKISGEISGY----NNDMSCSNSKEE 112
           +LKE+LA++ PLV+ LR +KEERM+QF+D++ QIEKISGEISGY    N  M+ S + EE
Sbjct: 62  SLKEKLAAVTPLVEELRIQKEERMKQFSDIKAQIEKISGEISGYSDHLNKAMNISLTLEE 121

Query: 111 NDLSLRKLNEHQTHLHSLQKEKSDRLNKVLEYVNEVH 1
            DL+LR LNE+QTHL +LQKEKSDRLNKVL YVNEVH
Sbjct: 122 QDLTLRNLNEYQTHLRTLQKEKSDRLNKVLGYVNEVH 158


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