BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009924
         (1480 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [S...   296   9e-78
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   294   3e-77
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   294   3e-77
gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japo...   293   6e-77
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   291   3e-76

>ref|XP_002454941.1| hypothetical protein SORBIDRAFT_03g001780 [Sorghum bicolor]
            gi|241926916|gb|EES00061.1| hypothetical protein
            SORBIDRAFT_03g001780 [Sorghum bicolor]
          Length = 631

 Score =  296 bits (758), Expect = 9e-78
 Identities = 154/429 (35%), Positives = 258/429 (60%), Gaps = 4/429 (0%)
 Frame = +2

Query: 2    LKMDMAKAYDRVEWSFLDSIFEKLGFNEKWRGMIQQCLTSVTFQVLLKGSLLKKFKPERG 181
            +K+DM+KAYDRVEWSFL+++  K+GF+EKW  +I +C+T+VT+++ +  S  +K  P+RG
Sbjct: 154  IKLDMSKAYDRVEWSFLENMMRKMGFDEKWVQLIMKCVTTVTYKIKVNDSYTQKIFPQRG 213

Query: 182  LRQGDPLSSYLFILVSEAMSRLIARKEQEGLIHGIKIKKISLPITHLLYVDDLIIFTKAN 361
            LRQGDPLS YLFI+ +E +S ++ + EQ+G I GIKI + +  + HL + DD +I  +A 
Sbjct: 214  LRQGDPLSPYLFIICAEGLSAMLQKAEQKGKIEGIKICRGAPKVNHLFFADDSLILMRAR 273

Query: 362  TSDGGHLRQILDDYCEASEQKINFDKSSMFFSKNVRFRNKLRLKRFWKMSQFESREKYLG 541
             SD   LR+ILD Y +AS Q IN +KSSM FS N    ++  ++    ++   S EKYLG
Sbjct: 274  ASDALELRRILDVYEKASGQVINKEKSSMMFSPNTGQHDRSLMRSNLSITDEASTEKYLG 333

Query: 542  IPVMLSQRKAEDFEFLVNNVHKKIKGWKVKVLSQAGRATLISSMAQTTPLYAMSTYMLPV 721
            +PV + + + + FE++   +  +I+GW+ K+LS+AG+  LI ++AQ+ P YAMS + L  
Sbjct: 334  LPVNIGKSRKKPFEYIKKKIWSRIQGWQEKLLSKAGKEILIKAVAQSIPTYAMSCFDLTK 393

Query: 722  STCEKIDKACRDFFWNGTETSKSVHTIGWEHMCKPKKYEGLGFRKSREMNVAMLAKLPWK 901
              C+++      ++W+  + +  +H I WE + + K+  GLGFR     N+AML++  W+
Sbjct: 394  GLCDELSSIIGRYWWSQQDKANKIHWISWEKLTQSKEKGGLGFRDLHLFNLAMLSRQAWR 453

Query: 902  AATNVESMWTKILYSIYSKNWIGDVE--KPPEYASFFWKSIHRVFNTISEGVLWNIHNGQ 1075
              TN +S+  ++L + Y  +   D+    P    S+ W+SI +    + EG++W I NG+
Sbjct: 454  LLTNPDSLCGQVLKARYFPH--SDILHCSPRPRISYTWRSILKGVALLKEGIIWRIGNGK 511

Query: 1076 SISVMKDPWLI--CNGKPRTLKELGVINPELENMNVSGLFKSDGSCWDPELLALHFEPFI 1249
            ++ + + PW+      KP T +   ++        V+ L       WD +L+   F P  
Sbjct: 512  NVKIWEHPWIPKGITRKPITPRGASLLT------RVNELINPVTGEWDEQLVNDLFWPQD 565

Query: 1250 RQKILEVVV 1276
             ++IL++ +
Sbjct: 566  AEEILQIPI 574


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  294 bits (752), Expect(2) = 3e-77
 Identities = 151/415 (36%), Positives = 242/415 (58%), Gaps = 4/415 (0%)
 Frame = +2

Query: 5    KMDMAKAYDRVEWSFLDSIFEKLGFNEKWRGMIQQCLTSVTFQVLLKGSLLKKFKPERGL 184
            K+DM+KAYDRVEWSFL  +  KLGF+  W  +I +C+++VT+++ + G L + F PERGL
Sbjct: 775  KLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGL 834

Query: 185  RQGDPLSSYLFILVSEAMSRLIARKEQEGLIHGIKIKKISLPITHLLYVDDLIIFTKANT 364
            RQGDPLS YLF+L +E  S L+++ E+EG +HGI+I + +  ++HLL+ DD +I  +AN 
Sbjct: 835  RQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANG 894

Query: 365  SDGGHLRQILDDYCEASEQKINFDKSSMFFSKNVRFRNKLRLKRFWKMSQFESREKYLGI 544
             +   L+ IL  Y E S Q IN DKS++ FS N     K  +     M +  + EKYLG+
Sbjct: 895  GEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGL 954

Query: 545  PVMLSQRKAEDFEFLVNNVHKKIKGWKVKVLSQAGRATLISSMAQTTPLYAMSTYMLPVS 724
            PV + + + + F +L   + ++I+GWK K+LS+AG+  LI ++AQ  P +AM  + L   
Sbjct: 955  PVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKD 1014

Query: 725  TCEKIDKACRDFFWNGTETSKSVHTIGWEHMCKPKKYEGLGFRKSREMNVAMLAKLPWKA 904
             C++I K    ++W+  E    +H + W  +  PK   GLGFR     N+AMLAK  W+ 
Sbjct: 1015 LCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRL 1074

Query: 905  ATNVESMWTKILYSIYSKNWIGDVEKPPEYA--SFFWKSIHRVFNTISEGVLWNIHNGQS 1078
              + +S+ +++L + Y    +GD  +P + +  S+ W+SI +    +  G++W + +G  
Sbjct: 1075 IQDPDSLCSRVLRAKYFP--LGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSK 1132

Query: 1079 ISVMKDPWLI--CNGKPRTLKELGVINPELENMNVSGLFKSDGSCWDPELLALHF 1237
            I++  DPW+    + KP T +   ++        V  L       WD +LL+  F
Sbjct: 1133 INIWADPWIPRGWSRKPMTPRGANLVT------KVEELIDPYTGTWDEDLLSQTF 1181



 Score = 22.7 bits (47), Expect(2) = 3e-77
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
 Frame = +1

Query: 1294 KDKMIWCEDRSGSLTVKSVYSMLNH-------------SKWEGEXXXXXXKTIAHIWKAK 1434
            +D + W  D  G  TVKS Y +                S WE        K    +WK  
Sbjct: 1199 EDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKK----LWKLG 1254

Query: 1435 LPANTLLFI 1461
            +P     F+
Sbjct: 1255 VPGKIKHFL 1263


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  294 bits (752), Expect(2) = 3e-77
 Identities = 151/415 (36%), Positives = 242/415 (58%), Gaps = 4/415 (0%)
 Frame = +2

Query: 5    KMDMAKAYDRVEWSFLDSIFEKLGFNEKWRGMIQQCLTSVTFQVLLKGSLLKKFKPERGL 184
            K+DM+KAYDRVEWSFL  +  KLGF+  W  +I +C+++VT+++ + G L + F PERGL
Sbjct: 771  KLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGL 830

Query: 185  RQGDPLSSYLFILVSEAMSRLIARKEQEGLIHGIKIKKISLPITHLLYVDDLIIFTKANT 364
            RQGDPLS YLF+L +E  S L+++ E+EG +HGI+I + +  ++HLL+ DD +I  +AN 
Sbjct: 831  RQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANG 890

Query: 365  SDGGHLRQILDDYCEASEQKINFDKSSMFFSKNVRFRNKLRLKRFWKMSQFESREKYLGI 544
             +   L+ IL  Y E S Q IN DKS++ FS N     K  +     M +  + EKYLG+
Sbjct: 891  GEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGL 950

Query: 545  PVMLSQRKAEDFEFLVNNVHKKIKGWKVKVLSQAGRATLISSMAQTTPLYAMSTYMLPVS 724
            PV + + + + F +L   + ++I+GWK K+LS+AG+  LI ++AQ  P +AM  + L   
Sbjct: 951  PVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQVIPTFAMGCFELTKD 1010

Query: 725  TCEKIDKACRDFFWNGTETSKSVHTIGWEHMCKPKKYEGLGFRKSREMNVAMLAKLPWKA 904
             C++I K    ++W+  E    +H + W  +  PK   GLGFR     N+AMLAK  W+ 
Sbjct: 1011 LCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRL 1070

Query: 905  ATNVESMWTKILYSIYSKNWIGDVEKPPEYA--SFFWKSIHRVFNTISEGVLWNIHNGQS 1078
              + +S+ +++L + Y    +GD  +P + +  S+ W+SI +    +  G++W + +G  
Sbjct: 1071 IQDPDSLCSRVLRAKYFP--LGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSK 1128

Query: 1079 ISVMKDPWLI--CNGKPRTLKELGVINPELENMNVSGLFKSDGSCWDPELLALHF 1237
            I++  DPW+    + KP T +   ++        V  L       WD +LL+  F
Sbjct: 1129 INIWADPWIPRGWSRKPMTPRGANLVT------KVEELIDPYTGTWDEDLLSQTF 1177



 Score = 22.7 bits (47), Expect(2) = 3e-77
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
 Frame = +1

Query: 1294 KDKMIWCEDRSGSLTVKSVYSMLNH-------------SKWEGEXXXXXXKTIAHIWKAK 1434
            +D + W  D  G  TVKS Y +                S WE        K    +WK  
Sbjct: 1195 EDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKK----LWKLG 1250

Query: 1435 LPANTLLFI 1461
            +P     F+
Sbjct: 1251 VPGKIKHFL 1259


>gb|EEE50824.1| hypothetical protein OsJ_31232 [Oryza sativa Japonica Group]
          Length = 1594

 Score =  293 bits (750), Expect(2) = 6e-77
 Identities = 151/415 (36%), Positives = 242/415 (58%), Gaps = 4/415 (0%)
 Frame = +2

Query: 5    KMDMAKAYDRVEWSFLDSIFEKLGFNEKWRGMIQQCLTSVTFQVLLKGSLLKKFKPERGL 184
            K+DM+KAYDRVEWSFL  +  KLGF+  W  +I +C+++VT+++ + G L + F PERGL
Sbjct: 803  KLDMSKAYDRVEWSFLHDMMLKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPERGL 862

Query: 185  RQGDPLSSYLFILVSEAMSRLIARKEQEGLIHGIKIKKISLPITHLLYVDDLIIFTKANT 364
            RQGDPLS YLF+L +E  S L+++ E+EG +HGI+I + +  ++HLL+ DD +I  +AN 
Sbjct: 863  RQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANG 922

Query: 365  SDGGHLRQILDDYCEASEQKINFDKSSMFFSKNVRFRNKLRLKRFWKMSQFESREKYLGI 544
             +   L+ IL  Y E S Q IN DKS++ FS N     K  +     M +  + EKYLG+
Sbjct: 923  GEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKGAVMAALNMQRETTNEKYLGL 982

Query: 545  PVMLSQRKAEDFEFLVNNVHKKIKGWKVKVLSQAGRATLISSMAQTTPLYAMSTYMLPVS 724
            PV + + + + F +L   + ++I+GWK K+LS+AG+  LI ++AQ  P +AM  + L   
Sbjct: 983  PVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKD 1042

Query: 725  TCEKIDKACRDFFWNGTETSKSVHTIGWEHMCKPKKYEGLGFRKSREMNVAMLAKLPWKA 904
             C++I K    ++W+  E    +H + W  +  PK   GLGFR     N+AMLAK  W+ 
Sbjct: 1043 LCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRL 1102

Query: 905  ATNVESMWTKILYSIYSKNWIGDVEKPPEYA--SFFWKSIHRVFNTISEGVLWNIHNGQS 1078
              + +S+ +++L + Y    +GD  +P + +  S+ W+SI +    +  G++W + +G  
Sbjct: 1103 IQDPDSLCSRVLRAKYFP--LGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRMGDGSK 1160

Query: 1079 ISVMKDPWLI--CNGKPRTLKELGVINPELENMNVSGLFKSDGSCWDPELLALHF 1237
            I++  DPW+    + KP T +   ++        V  L       WD +LL+  F
Sbjct: 1161 INIWADPWIPRGWSRKPMTPRGANLVT------KVEELIDPYTGTWDEDLLSQTF 1209



 Score = 22.7 bits (47), Expect(2) = 6e-77
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
 Frame = +1

Query: 1294 KDKMIWCEDRSGSLTVKSVYSMLNH-------------SKWEGEXXXXXXKTIAHIWKAK 1434
            +D + W  D  G  TVKS Y +                S WE        K    +WK  
Sbjct: 1227 EDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKK----LWKLG 1282

Query: 1435 LPANTLLFI 1461
            +P     F+
Sbjct: 1283 VPGKIKHFL 1291


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  291 bits (744), Expect(2) = 3e-76
 Identities = 149/415 (35%), Positives = 241/415 (58%), Gaps = 4/415 (0%)
 Frame = +2

Query: 5    KMDMAKAYDRVEWSFLDSIFEKLGFNEKWRGMIQQCLTSVTFQVLLKGSLLKKFKPERGL 184
            K+DM+KAYDRVEWSFL  +  KLGF+  W  +I +C+++VT+++ + G L + F P RGL
Sbjct: 830  KLDMSKAYDRVEWSFLHDMILKLGFHTDWVNLIMKCVSTVTYRIRVNGELSESFSPGRGL 889

Query: 185  RQGDPLSSYLFILVSEAMSRLIARKEQEGLIHGIKIKKISLPITHLLYVDDLIIFTKANT 364
            RQGDPLS YLF+L +E  S L+++ E+EG +HGI+I + +  ++HLL+ DD +I  +AN 
Sbjct: 890  RQGDPLSPYLFLLCAEGFSALLSKTEEEGRLHGIRICQGAPSVSHLLFADDSLILCRANG 949

Query: 365  SDGGHLRQILDDYCEASEQKINFDKSSMFFSKNVRFRNKLRLKRFWKMSQFESREKYLGI 544
             +   L+ IL  Y E S Q IN DKS++ FS N     K  +     M +  + E+YLG+
Sbjct: 950  GEAQQLQTILQIYEECSGQVINKDKSAVMFSPNTSSLEKRAVMAALNMQRETTNERYLGL 1009

Query: 545  PVMLSQRKAEDFEFLVNNVHKKIKGWKVKVLSQAGRATLISSMAQTTPLYAMSTYMLPVS 724
            PV + + + + F +L   + ++I+GWK K+LS+AG+  LI ++AQ  P +AM  + L   
Sbjct: 1010 PVFVGRSRTKIFSYLKERIWQRIQGWKEKLLSRAGKEILIKAVAQAIPTFAMGCFELTKD 1069

Query: 725  TCEKIDKACRDFFWNGTETSKSVHTIGWEHMCKPKKYEGLGFRKSREMNVAMLAKLPWKA 904
             C++I K    ++W+  E    +H + W  +  PK   GLGFR     N+AMLAK  W+ 
Sbjct: 1070 LCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRL 1129

Query: 905  ATNVESMWTKILYSIYSKNWIGDVEKPPEYA--SFFWKSIHRVFNTISEGVLWNIHNGQS 1078
              + +S+ +++L + Y    +GD  +P + +  S+ W+SI +    +  G++W + +G  
Sbjct: 1130 IQDPDSLCSRVLRAKYFP--LGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRVGDGSK 1187

Query: 1079 ISVMKDPWLI--CNGKPRTLKELGVINPELENMNVSGLFKSDGSCWDPELLALHF 1237
            I++  DPW+    + KP T +   ++        V  L       WD +LL+  F
Sbjct: 1188 INIWADPWIPRGWSRKPMTPRGANLVT------KVEELIDPYTGTWDEDLLSQTF 1236



 Score = 22.7 bits (47), Expect(2) = 3e-76
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
 Frame = +1

Query: 1294 KDKMIWCEDRSGSLTVKSVYSMLNH-------------SKWEGEXXXXXXKTIAHIWKAK 1434
            +D + W  D  G  TVKS Y +                S WE        K    +WK  
Sbjct: 1254 EDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKK----LWKLG 1309

Query: 1435 LPANTLLFI 1461
            +P     F+
Sbjct: 1310 VPGKIKHFL 1318