BLASTX nr result

ID: Coptis24_contig00009917 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009917
         (308 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003524162.1| PREDICTED: ABC transporter C family member 3...   164   7e-39
ref|XP_003532715.1| PREDICTED: ABC transporter C family member 3...   162   3e-38
dbj|BAB90531.1| putative MRP-like ABC transporter [Oryza sativa ...   157   8e-37
ref|NP_001172697.1| Os01g0902100 [Oryza sativa Japonica Group] g...   157   8e-37
ref|XP_002312645.1| multidrug resistance protein ABC transporter...   157   8e-37

>ref|XP_003524162.1| PREDICTED: ABC transporter C family member 3-like [Glycine max]
          Length = 1452

 Score =  164 bits (415), Expect = 7e-39
 Identities = 76/102 (74%), Positives = 88/102 (86%)
 Frame = -2

Query: 307  SPIVHHFSESITGAATIRCFNQEARFFAKIQMLIDDYSRLTFYSSATMEWLSVRINFLFN 128
            +PI+HHFSESI GAATIRCFNQE  FF K++ LIDDYSR+ F++  TMEWLSVRINFLFN
Sbjct: 1059 APILHHFSESIAGAATIRCFNQEKLFFTKVKALIDDYSRVAFHNFGTMEWLSVRINFLFN 1118

Query: 127  LVFLSALLILVTLPREAVDPSMAGLIATYGLSLNVLQGWVIW 2
            LVF   L+ILVTLPR  +DPS+AGL+ATYGL+LNVLQ WVIW
Sbjct: 1119 LVFYFVLVILVTLPRSTIDPSLAGLVATYGLNLNVLQAWVIW 1160


>ref|XP_003532715.1| PREDICTED: ABC transporter C family member 3-like [Glycine max]
          Length = 1454

 Score =  162 bits (410), Expect = 3e-38
 Identities = 76/102 (74%), Positives = 87/102 (85%)
 Frame = -2

Query: 307  SPIVHHFSESITGAATIRCFNQEARFFAKIQMLIDDYSRLTFYSSATMEWLSVRINFLFN 128
            +PI+HHFSESI GAATIRCFNQE  F  KI+ LIDDYSR+ F++  TMEWLSVRINFLFN
Sbjct: 1061 APILHHFSESIAGAATIRCFNQEKLFMTKIKALIDDYSRVAFHNFGTMEWLSVRINFLFN 1120

Query: 127  LVFLSALLILVTLPREAVDPSMAGLIATYGLSLNVLQGWVIW 2
            LVF   L+ILVTLPR  +DPS+AGL+ATYGL+LNVLQ WVIW
Sbjct: 1121 LVFYFVLVILVTLPRSTIDPSLAGLVATYGLNLNVLQAWVIW 1162


>dbj|BAB90531.1| putative MRP-like ABC transporter [Oryza sativa Japonica Group]
            gi|27368889|emb|CAD59602.1| MRP-like ABC transporter
            [Oryza sativa Japonica Group]
          Length = 1386

 Score =  157 bits (397), Expect = 8e-37
 Identities = 71/102 (69%), Positives = 88/102 (86%)
 Frame = -2

Query: 307  SPIVHHFSESITGAATIRCFNQEARFFAKIQMLIDDYSRLTFYSSATMEWLSVRINFLFN 128
            +P++HHFSE+++GAATIRCFNQ  +FF K   LIDDYSR+TF++SAT+EWL VRINFLFN
Sbjct: 1000 APVLHHFSETVSGAATIRCFNQGEKFFRKSLALIDDYSRITFHNSATIEWLCVRINFLFN 1059

Query: 127  LVFLSALLILVTLPREAVDPSMAGLIATYGLSLNVLQGWVIW 2
            LVF   L+ILV++PR  +DPS+AGL ATYGL+LNVLQ WVIW
Sbjct: 1060 LVFFVTLVILVSMPRNTIDPSLAGLAATYGLNLNVLQAWVIW 1101


>ref|NP_001172697.1| Os01g0902100 [Oryza sativa Japonica Group]
           gi|255673971|dbj|BAH91427.1| Os01g0902100 [Oryza sativa
           Japonica Group]
          Length = 293

 Score =  157 bits (397), Expect = 8e-37
 Identities = 71/102 (69%), Positives = 88/102 (86%)
 Frame = -2

Query: 307 SPIVHHFSESITGAATIRCFNQEARFFAKIQMLIDDYSRLTFYSSATMEWLSVRINFLFN 128
           +P++HHFSE+++GAATIRCFNQ  +FF K   LIDDYSR+TF++SAT+EWL VRINFLFN
Sbjct: 36  APVLHHFSETVSGAATIRCFNQGEKFFRKSLALIDDYSRITFHNSATIEWLCVRINFLFN 95

Query: 127 LVFLSALLILVTLPREAVDPSMAGLIATYGLSLNVLQGWVIW 2
           LVF   L+ILV++PR  +DPS+AGL ATYGL+LNVLQ WVIW
Sbjct: 96  LVFFVTLVILVSMPRNTIDPSLAGLAATYGLNLNVLQAWVIW 137


>ref|XP_002312645.1| multidrug resistance protein ABC transporter family [Populus
            trichocarpa] gi|222852465|gb|EEE90012.1| multidrug
            resistance protein ABC transporter family [Populus
            trichocarpa]
          Length = 1361

 Score =  157 bits (397), Expect = 8e-37
 Identities = 73/102 (71%), Positives = 85/102 (83%)
 Frame = -2

Query: 307  SPIVHHFSESITGAATIRCFNQEARFFAKIQMLIDDYSRLTFYSSATMEWLSVRINFLFN 128
            +PI+HHFSESITGAATIRCFNQE RF  +   LIDDYSR+ F++S TMEWL +RINFLFN
Sbjct: 976  APILHHFSESITGAATIRCFNQEERFLMRSLSLIDDYSRIVFHNSGTMEWLCIRINFLFN 1035

Query: 127  LVFLSALLILVTLPREAVDPSMAGLIATYGLSLNVLQGWVIW 2
            L F   L+ILV LP+ A+DPS+AGL ATYGL+LNVLQ WVIW
Sbjct: 1036 LGFFLVLIILVNLPKSAIDPSLAGLAATYGLNLNVLQAWVIW 1077


Top