BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009637
         (732 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_201329.1| RNA recognition motif-containing protein [Arabi...   202   8e-50
ref|XP_002866661.1| polyadenylate-binding protein family protein...   201   1e-49
gb|AEO32283.1| hypothetical protein [Amblyomma maculatum]             199   6e-49
gb|ABL97957.1| poly(A)-binding protein II-like [Brassica rapa]        199   6e-49
ref|XP_002525843.1| poly-A binding protein, putative [Ricinus co...   198   8e-49

>ref|NP_201329.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|14423494|gb|AAK62429.1|AF386984_1 poly(A)-binding
           protein II-like [Arabidopsis thaliana]
           gi|10178188|dbj|BAB11662.1| poly(A)-binding protein
           II-like [Arabidopsis thaliana]
           gi|23197620|gb|AAN15337.1| poly(A)-binding protein
           II-like [Arabidopsis thaliana]
           gi|332010647|gb|AED98030.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 220

 Score =  202 bits (513), Expect = 8e-50
 Identities = 106/144 (73%), Positives = 115/144 (79%), Gaps = 4/144 (2%)
 Frame = -1

Query: 732 AALREMQAKVEKEMTAAFQVEIV--DASKEEVDSRSVFVGNVDYTCTSEEVQQHFQSCGL 559
           AALREMQAKVEKEM A     I    A KEEVD+RSVFVGNVDY CT EEVQQHFQ+CG 
Sbjct: 58  AALREMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGT 117

Query: 558 VTRVTIRTDKSGQPMGFAYVEFVEIESVQQALQLNDSELHGRQLKVVAKRTNIPGMKQFR 379
           V RVTI TDK GQP GFAYVEFVE+E+VQ+ALQLN+SELHGRQLKV+ KRTN+PG+KQFR
Sbjct: 118 VHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFR 177

Query: 378 PRRFNPYMGGHPRR--FHPYMGHP 313
            RRFNPYMG   RR    PYM  P
Sbjct: 178 GRRFNPYMGYRFRRPFMSPYMYSP 201


>ref|XP_002866661.1| polyadenylate-binding protein family protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312496|gb|EFH42920.1|
           polyadenylate-binding protein family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 220

 Score =  201 bits (512), Expect = 1e-49
 Identities = 106/144 (73%), Positives = 115/144 (79%), Gaps = 4/144 (2%)
 Frame = -1

Query: 732 AALREMQAKVEKEMTAAFQVEIV--DASKEEVDSRSVFVGNVDYTCTSEEVQQHFQSCGL 559
           AALREMQAKVEKEM A     I    A KEEVD+RSVFVGNVDY CT EEVQQHFQ+CG 
Sbjct: 58  AALREMQAKVEKEMGAQDPASIAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGT 117

Query: 558 VTRVTIRTDKSGQPMGFAYVEFVEIESVQQALQLNDSELHGRQLKVVAKRTNIPGMKQFR 379
           V RVTI TDK GQP GFAYVEFVE+E+VQ+ALQLN+SELHGRQLKV+ KRTN+PG+KQFR
Sbjct: 118 VHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFR 177

Query: 378 PRRFNPYMGGHPRR--FHPYMGHP 313
            RRFNPYMG   RR    PYM  P
Sbjct: 178 GRRFNPYMGYRFRRPFMPPYMYSP 201


>gb|AEO32283.1| hypothetical protein [Amblyomma maculatum]
          Length = 207

 Score =  199 bits (505), Expect = 6e-49
 Identities = 104/140 (74%), Positives = 115/140 (82%), Gaps = 3/140 (2%)
 Frame = -1

Query: 732 AALREMQAKVEKEMTAAFQVEIVDA---SKEEVDSRSVFVGNVDYTCTSEEVQQHFQSCG 562
           AALREMQAKVEKEM A        A   SK+EVDSRSVFVGNVDY+CT EEVQQHFQSCG
Sbjct: 54  AALREMQAKVEKEMGAGQDPASAAANQESKQEVDSRSVFVGNVDYSCTPEEVQQHFQSCG 113

Query: 561 LVTRVTIRTDKSGQPMGFAYVEFVEIESVQQALQLNDSELHGRQLKVVAKRTNIPGMKQF 382
            V RVTI TDK GQP G+AYVEF+E+E+VQ+ALQLN+SELHGRQLKV AKRTN+PGMKQ+
Sbjct: 114 TVNRVTILTDKFGQPKGYAYVEFLEVEAVQEALQLNESELHGRQLKVSAKRTNVPGMKQY 173

Query: 381 RPRRFNPYMGGHPRRFHPYM 322
           R RRFNPY+G   RR  PYM
Sbjct: 174 RMRRFNPYIGTRYRR--PYM 191


>gb|ABL97957.1| poly(A)-binding protein II-like [Brassica rapa]
          Length = 220

 Score =  199 bits (505), Expect = 6e-49
 Identities = 104/144 (72%), Positives = 114/144 (79%), Gaps = 4/144 (2%)
 Frame = -1

Query: 732 AALREMQAKVEKEMTAAFQVEIV--DASKEEVDSRSVFVGNVDYTCTSEEVQQHFQSCGL 559
           AALREMQAKVEKEM A     +    A KEEVD+RSVFVGNVDY CT EEVQQHFQSCG 
Sbjct: 58  AALREMQAKVEKEMGAQDPATLAANQAGKEEVDARSVFVGNVDYACTPEEVQQHFQSCGT 117

Query: 558 VTRVTIRTDKSGQPMGFAYVEFVEIESVQQALQLNDSELHGRQLKVVAKRTNIPGMKQFR 379
           V RVTI TDK GQP GFAYVEFVE+E++Q+ALQLN+SELHGRQLKV+ KRTN+PG+KQ R
Sbjct: 118 VHRVTILTDKFGQPKGFAYVEFVEVEAIQEALQLNESELHGRQLKVLPKRTNVPGLKQHR 177

Query: 378 PRRFNPYMGGHPRR--FHPYMGHP 313
            RRFNPYMG   RR    PYM  P
Sbjct: 178 GRRFNPYMGYRFRRPFMSPYMYSP 201


>ref|XP_002525843.1| poly-A binding protein, putative [Ricinus communis]
           gi|223534848|gb|EEF36537.1| poly-A binding protein,
           putative [Ricinus communis]
          Length = 198

 Score =  198 bits (504), Expect = 8e-49
 Identities = 103/144 (71%), Positives = 116/144 (80%), Gaps = 4/144 (2%)
 Frame = -1

Query: 732 AALREMQAKVEKEMTAAFQVEIV--DASKEEVDSRSVFVGNVDYTCTSEEVQQHFQSCGL 559
           AALREMQAKVEKEM ++         A++EEVDSRSVFVGNVDY+CT EEVQQHFQSCG 
Sbjct: 36  AALREMQAKVEKEMGSSQDPTAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGT 95

Query: 558 VTRVTIRTDKSGQPMGFAYVEFVEIESVQQALQLNDSELHGRQLKVVAKRTNIPGMKQFR 379
           V R+TIRTDK GQP G+AYVEF+E E+VQ+AL LN+SELHGRQLKV AKRTN+PGMKQFR
Sbjct: 96  VNRITIRTDKYGQPKGYAYVEFLEPEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFR 155

Query: 378 PRRFNPYMGGHPR--RFHPYMGHP 313
           PRR NPYMG  PR  +  PY   P
Sbjct: 156 PRRPNPYMGFAPRGSQLPPYFYSP 179