BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009559
         (1952 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containi...   577   e-162
ref|XP_002528283.1| pentatricopeptide repeat-containing protein,...   569   e-160
ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containi...   514   e-143
ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containi...   514   e-143
ref|NP_179705.1| pentatricopeptide repeat-containing protein [Ar...   490   e-136

>ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
            [Vitis vinifera]
          Length = 612

 Score =  577 bits (1486), Expect = e-162
 Identities = 281/440 (63%), Positives = 350/440 (79%)
 Frame = -1

Query: 1952 IMFAKNGFCNEALGFYNKFRSLCIGVNEYSFSGVLIACVKLEEFRVTQQVHGQVFRFGYL 1773
            I  A+ G+ +EAL FY++FR L I  N +SF+GVL  CVKL+E  +T+QVHGQ+   G+L
Sbjct: 165  IAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFL 224

Query: 1772 SNLVISSSIVDAYAKSGVIGDGKKMFDEMPDRDVLAWTTLVSGYAKVGDMEMARRLFDEI 1593
            SN+V+SSS++DAY K G++GD +K+FDEM  RDVLAWTT+VSGYAK GDM+ A  LF E+
Sbjct: 225  SNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANELFVEM 284

Query: 1592 PEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXLKHGK 1413
            PE NPVSWT+LISGY R+G+G +AL+LF++MM+  +RPDQFTF            LKHGK
Sbjct: 285  PEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASLKHGK 344

Query: 1412 QIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQH 1233
            QIH+YL+R  F+PN IVVS+LIDMYSKCGSLG+GR VFD M +KLD+VLWNT++S LAQH
Sbjct: 345  QIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISALAQH 404

Query: 1232 GLGDECIHLFHHMQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEH 1053
            G G+E I +   M R G KP++IT VVILNACSHSGLV +G+  FESM+  +GI   QEH
Sbjct: 405  GCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEH 464

Query: 1052 YACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLE 873
            YACL+DL GRAG F+EV D L+KM  KPD RVWNA+LG C+IHG+ ELGR AAE LI+LE
Sbjct: 465  YACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERLIELE 524

Query: 872  PQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFDQLH 693
            PQSS AYVLLS+IYA+ GRW+SV+KVR LMN RQVKKE+AISW+E+E+KVHSF+V D  H
Sbjct: 525  PQSSTAYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIENKVHSFSVSDSSH 584

Query: 692  PLKDEIYLALEQLTGQMDDD 633
            PLK++IY  LEQL GQM++D
Sbjct: 585  PLKEQIYSVLEQLAGQMEED 604



 Score =  147 bits (371), Expect = 1e-32
 Identities = 93/376 (24%), Positives = 176/376 (46%), Gaps = 32/376 (8%)
 Frame = -1

Query: 1952 IMFAKNGFCNEALGFYNKFRSLCIGVNEYSFSGVLIACVKLEEFRVTQQVHGQVFRFGYL 1773
            +   K    NEA+          + ++  + + +L  C      R  ++VH  +   G  
Sbjct: 32   VKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLK 91

Query: 1772 S-NLVISSSIVDAYAKSGVIGDGKKMFDEMPDRDVLAWTTLVSGYAKVGDMEMARRLFDE 1596
                 +S+ +++ YAK G   + +K+FD+M  R++ +W  ++SGYAK+G ++ AR+LFD+
Sbjct: 92   RPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDK 151

Query: 1595 IPEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXLKHG 1416
            +PE + VSW +++  + + G   EAL+ +SE    GI+ + F+F            +   
Sbjct: 152  MPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKLKEVGLT 211

Query: 1415 KQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTM------ 1254
            +Q+H  ++   F  N ++ SS++D Y KCG +G  R +FD+M  + D++ W TM      
Sbjct: 212  RQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSAR-DVLAWTTMVSGYAK 270

Query: 1253 -------------------------LSTLAQHGLGDECIHLFHHMQRLGTKPNRITLVVI 1149
                                     +S  A++G+G + + LF  M     +P++ T    
Sbjct: 271  WGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSC 330

Query: 1148 LNACSHSGLVDEGIQLFESMTQVHGITADQEHYACLVDLFGRAGRFDEVKDLLQKMSCKP 969
            L AC+    +  G Q+   + +++    +    + L+D++ + G     + +   M  K 
Sbjct: 331  LCACASIASLKHGKQIHAYLLRIN-FQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKL 389

Query: 968  DGRVWNAILGACKIHG 921
            D  +WN I+ A   HG
Sbjct: 390  DVVLWNTIISALAQHG 405


>ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223532320|gb|EEF34121.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 602

 Score =  569 bits (1467), Expect = e-160
 Identities = 274/439 (62%), Positives = 343/439 (78%)
 Frame = -1

Query: 1952 IMFAKNGFCNEALGFYNKFRSLCIGVNEYSFSGVLIACVKLEEFRVTQQVHGQVFRFGYL 1773
            I +AK+GFCN+AL FY + R L IG NEYSF+G+L  CVK++E  +++Q HGQV   G+L
Sbjct: 156  IAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFL 215

Query: 1772 SNLVISSSIVDAYAKSGVIGDGKKMFDEMPDRDVLAWTTLVSGYAKVGDMEMARRLFDEI 1593
            SNLVISSS++DAYAK   +GD +++FDEM  RDVLAWTT+VSGYA+ GD+E AR LFD +
Sbjct: 216  SNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLM 275

Query: 1592 PEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXLKHGK 1413
            PE NPV+WTSLI+GY R  LG +AL+LF++MM   IRPDQFTF            L HGK
Sbjct: 276  PEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGK 335

Query: 1412 QIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQH 1233
            QIH YLIR   +PN IVVSSLIDMYSKCG L VGR VFD M DK D+VLWNT++S+LAQH
Sbjct: 336  QIHGYLIRTNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQH 395

Query: 1232 GLGDECIHLFHHMQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEH 1053
            G G E I +F  M RLG KP+RITL+V+LNACSHSGLV EG++L+ES+T  HG+  +QEH
Sbjct: 396  GRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEH 455

Query: 1052 YACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLE 873
            YACL+DL GRAG FD + + L+KM CKP+  +WNA+LG C++HGN E GR  AE +I+L+
Sbjct: 456  YACLIDLLGRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELD 515

Query: 872  PQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFDQLH 693
            PQSSAAYVLLS+I+A  GRW+ VE VR LMN R V+K++AISW+E+E+KVHSFT  D+LH
Sbjct: 516  PQSSAAYVLLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIENKVHSFTASDRLH 575

Query: 692  PLKDEIYLALEQLTGQMDD 636
            PLK+ IYLAL+QL G M++
Sbjct: 576  PLKEVIYLALKQLAGHMEE 594



 Score =  142 bits (359), Expect = 2e-31
 Identities = 90/343 (26%), Positives = 167/343 (48%), Gaps = 32/343 (9%)
 Frame = -1

Query: 1853 VLIACVKLEEFRVTQQVHGQVFRFGYLS-NLVISSSIVDAYAKSGVIGDGKKMFDEMPDR 1677
            +L  C   +  ++ + VH  +   G    N  +++ +++ Y+K G      K+FDEM  R
Sbjct: 56   LLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVFDEMSTR 115

Query: 1676 DVLAWTTLVSGYAKVGDMEMARRLFDEIPEPNPVSWTSLISGYVRSGLGPEALKLFSEMM 1497
            ++ +W  ++SGYAK+G ++ AR+LFD++PE + VSW +++  Y +SG   +AL+ + E+ 
Sbjct: 116  NLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALRFYRELR 175

Query: 1496 IRGIRPDQFTFXXXXXXXXXXXXLKHGKQIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLG 1317
              GI  ++++F            L+  KQ H  ++   F  N ++ SS++D Y+KC  +G
Sbjct: 176  RLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMG 235

Query: 1316 VGRSVFDQMDDKLDIVLWNTMLSTLAQ-------------------------------HG 1230
              R +FD+M  + D++ W TM+S  AQ                               H 
Sbjct: 236  DARRLFDEMIIR-DVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHD 294

Query: 1229 LGDECIHLFHHMQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEHY 1050
            LG + + LF  M  L  +P++ T    L A +    ++ G Q+   + + + I  +    
Sbjct: 295  LGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTN-IRPNTIVV 353

Query: 1049 ACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAILGACKIHG 921
            + L+D++ + G  +  + +   M  K D  +WN I+ +   HG
Sbjct: 354  SSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHG 396


>ref|XP_004172296.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like
            [Cucumis sativus]
          Length = 611

 Score =  514 bits (1323), Expect = e-143
 Identities = 251/440 (57%), Positives = 326/440 (74%)
 Frame = -1

Query: 1952 IMFAKNGFCNEALGFYNKFRSLCIGVNEYSFSGVLIACVKLEEFRVTQQVHGQVFRFGYL 1773
            + +AK G  NEA+G Y  FR L +G N +SF+GVLI CVKL+E ++ +QVHGQV   G+L
Sbjct: 168  LAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFL 227

Query: 1772 SNLVISSSIVDAYAKSGVIGDGKKMFDEMPDRDVLAWTTLVSGYAKVGDMEMARRLFDEI 1593
            SNLV+SSSIVDAY+K G +   + +FDEM  +D+ AWTT+VSGYAK GDM  A  LF ++
Sbjct: 228  SNLVLSSSIVDAYSKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQM 287

Query: 1592 PEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXLKHGK 1413
            PE NPVSW++LISGY R+ LG EAL  F++MM  GI P+Q+TF            LKHGK
Sbjct: 288  PEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGK 347

Query: 1412 QIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQH 1233
            Q+H YLIR  F+ N IVVSSLIDMYSKCG L     VF  M +K D+V+WNTM+S LAQ+
Sbjct: 348  QVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQN 407

Query: 1232 GLGDECIHLFHHMQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEH 1053
            G G++ + +F+ M   G KP+RIT +VIL+ACSHSGLV EG++ F++MT  HG+  DQEH
Sbjct: 408  GHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEH 467

Query: 1052 YACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLE 873
            YACL+DL GRAG F E+ + L+ MSCKPD RVW+A+LG C+IH N ELGR  AE +I+L+
Sbjct: 468  YACLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELK 527

Query: 872  PQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFDQLH 693
            PQSSAAYV L+++YA  G+W+SVEKVR LM+ + ++KE+ ISW++V +K HSF   D+LH
Sbjct: 528  PQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLH 587

Query: 692  PLKDEIYLALEQLTGQMDDD 633
            PLK+EIYL LEQL    ++D
Sbjct: 588  PLKEEIYLLLEQLARHTEED 607



 Score =  140 bits (353), Expect = 1e-30
 Identities = 102/409 (24%), Positives = 185/409 (45%), Gaps = 41/409 (10%)
 Frame = -1

Query: 1943 AKNGFCNEALGFYNKFRSLCIGVNEYSFSGVLIACVKLEEFRVTQQVHGQVFRFGYLS-N 1767
            +  G   EAL + ++     I +    F  +L  C K + F+  + VH  +   G+    
Sbjct: 38   SSQGRLPEALSYLDRLAQRGIRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPT 97

Query: 1766 LVISSSIVDAYAKSGVIGDGKKMFDEMPDRDVLAWTTLVSGYAKVGDMEMARRLFDEIPE 1587
             ++++ ++  Y + G   + +K+FD+M  R++ +W  +++GYAK+GD+  AR+LFD + E
Sbjct: 98   TIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMME 157

Query: 1586 PNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXLKHGKQI 1407
             + VSW +++  Y + G   EA+ L+ +     +  + F+F            L+  KQ+
Sbjct: 158  KDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQV 217

Query: 1406 HSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDI--------------- 1272
            H  ++   F  N ++ SS++D YSKCG +   R++FD+M  K DI               
Sbjct: 218  HGQVLVAGFLSNLVLSSSIVDAYSKCGEMRCARTLFDEMLVK-DIHAWTTIVSGYAKWGD 276

Query: 1271 ----------------VLWNTMLSTLAQHGLGDECIHLFHHMQRLGTKPNRITLVVILNA 1140
                            V W+ ++S  A++ LG E +  F  M + G  P + T    L A
Sbjct: 277  MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 1139 CSHSGLVDEGIQLFESMTQVHGITADQEHYAC-------LVDLFGRAGRFDEVKDLLQKM 981
            C+    +  G        QVHG    + ++ C       L+D++ + G  +    +   M
Sbjct: 337  CASIAALKHG-------KQVHGYLI-RTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLM 388

Query: 980  SCKPDGRVWNAILGACKIHGNTELGRIAAEHLID--LEPQSSAAYVLLS 840
              K D  VWN ++ A   +G+ E        +++  L+P      V+LS
Sbjct: 389  GNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILS 437


>ref|XP_004137053.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like
            [Cucumis sativus]
          Length = 611

 Score =  514 bits (1323), Expect = e-143
 Identities = 251/440 (57%), Positives = 326/440 (74%)
 Frame = -1

Query: 1952 IMFAKNGFCNEALGFYNKFRSLCIGVNEYSFSGVLIACVKLEEFRVTQQVHGQVFRFGYL 1773
            + +AK G  NEA+G Y  FR L +G N +SF+GVLI CVKL+E ++ +QVHGQV   G+L
Sbjct: 168  LAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQVHGQVLVAGFL 227

Query: 1772 SNLVISSSIVDAYAKSGVIGDGKKMFDEMPDRDVLAWTTLVSGYAKVGDMEMARRLFDEI 1593
            SNLV+SSSIVDAYAK G +   + +FDEM  +D+ AWTT+VSGYAK GDM  A  LF ++
Sbjct: 228  SNLVLSSSIVDAYAKCGEMRCARTLFDEMLVKDIHAWTTIVSGYAKWGDMNSASELFHQM 287

Query: 1592 PEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXLKHGK 1413
            PE NPVSW++LISGY R+ LG EAL  F++MM  GI P+Q+TF            LKHGK
Sbjct: 288  PEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCACASIAALKHGK 347

Query: 1412 QIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQH 1233
            Q+H YLIR  F+ N IVVSSLIDMYSKCG L     VF  M +K D+V+WNTM+S LAQ+
Sbjct: 348  QVHGYLIRTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLMGNKQDVVVWNTMISALAQN 407

Query: 1232 GLGDECIHLFHHMQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEH 1053
            G G++ + +F+ M   G KP+RIT +VIL+ACSHSGLV EG++ F++MT  HG+  DQEH
Sbjct: 408  GHGEKAMQMFNDMVESGLKPDRITFIVILSACSHSGLVQEGLRFFKAMTYDHGVFPDQEH 467

Query: 1052 YACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLE 873
            Y+CL+DL GRAG F E+ + L+ MSCKPD RVW+A+LG C+IH N ELGR  AE +I+L+
Sbjct: 468  YSCLIDLLGRAGCFVELVNELENMSCKPDDRVWSALLGVCRIHNNIELGRKVAERVIELK 527

Query: 872  PQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFDQLH 693
            PQSSAAYV L+++YA  G+W+SVEKVR LM+ + ++KE+ ISW++V +K HSF   D+LH
Sbjct: 528  PQSSAAYVSLASLYAFLGKWESVEKVRELMDEKFIRKERGISWIDVGNKTHSFIASDRLH 587

Query: 692  PLKDEIYLALEQLTGQMDDD 633
            PLK+EIYL LEQL    ++D
Sbjct: 588  PLKEEIYLLLEQLARHTEED 607



 Score =  139 bits (349), Expect = 4e-30
 Identities = 100/409 (24%), Positives = 185/409 (45%), Gaps = 41/409 (10%)
 Frame = -1

Query: 1943 AKNGFCNEALGFYNKFRSLCIGVNEYSFSGVLIACVKLEEFRVTQQVHGQVFRFGYLS-N 1767
            +  G   EAL + ++     + +    F  +L  C K + F+  + VH  +   G+    
Sbjct: 38   SSQGRLPEALSYLDRLAQRGVRLPTGIFVDLLRLCAKAKYFKGGKCVHLHLKHTGFKRPT 97

Query: 1766 LVISSSIVDAYAKSGVIGDGKKMFDEMPDRDVLAWTTLVSGYAKVGDMEMARRLFDEIPE 1587
             ++++ ++  Y + G   + +K+FD+M  R++ +W  +++GYAK+GD+  AR+LFD + E
Sbjct: 98   TIVANHLIGMYFECGRDVEARKVFDKMSVRNLYSWNHMLAGYAKLGDVNNARKLFDRMME 157

Query: 1586 PNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXLKHGKQI 1407
             + VSW +++  Y + G   EA+ L+ +     +  + F+F            L+  KQ+
Sbjct: 158  KDVVSWNTIVLAYAKQGCFNEAIGLYRDFRRLDMGFNAFSFAGVLILCVKLKELQLAKQV 217

Query: 1406 HSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDI--------------- 1272
            H  ++   F  N ++ SS++D Y+KCG +   R++FD+M  K DI               
Sbjct: 218  HGQVLVAGFLSNLVLSSSIVDAYAKCGEMRCARTLFDEMLVK-DIHAWTTIVSGYAKWGD 276

Query: 1271 ----------------VLWNTMLSTLAQHGLGDECIHLFHHMQRLGTKPNRITLVVILNA 1140
                            V W+ ++S  A++ LG E +  F  M + G  P + T    L A
Sbjct: 277  MNSASELFHQMPEKNPVSWSALISGYARNSLGHEALDYFTKMMKFGINPEQYTFSSCLCA 336

Query: 1139 CSHSGLVDEGIQLFESMTQVHGITADQEHYAC-------LVDLFGRAGRFDEVKDLLQKM 981
            C+    +  G        QVHG    + ++ C       L+D++ + G  +    +   M
Sbjct: 337  CASIAALKHG-------KQVHGYLI-RTYFRCNTIVVSSLIDMYSKCGMLEASCCVFHLM 388

Query: 980  SCKPDGRVWNAILGACKIHGNTELGRIAAEHLID--LEPQSSAAYVLLS 840
              K D  VWN ++ A   +G+ E        +++  L+P      V+LS
Sbjct: 389  GNKQDVVVWNTMISALAQNGHGEKAMQMFNDMVESGLKPDRITFIVILS 437


>ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At2g21090 gi|4803934|gb|AAD29807.1| unknown protein
            [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 597

 Score =  490 bits (1262), Expect = e-136
 Identities = 242/442 (54%), Positives = 317/442 (71%), Gaps = 2/442 (0%)
 Frame = -1

Query: 1952 IMFAKNGFCNEALGFYNKFRSLCIGVNEYSFSGVLIACVKLEEFRVTQQVHGQVFRFGYL 1773
            I +A++G  +EAL FY +FR   I  NE+SF+G+L ACVK  + ++ +Q HGQV   G+L
Sbjct: 152  IGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFL 211

Query: 1772 SNLVISSSIVDAYAKSGVIGDGKKMFDEMPDRDVLAWTTLVSGYAKVGDMEMARRLFDEI 1593
            SN+V+S SI+DAYAK G +   K+ FDEM  +D+  WTTL+SGYAK+GDME A +LF E+
Sbjct: 212  SNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEM 271

Query: 1592 PEPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXLKHGK 1413
            PE NPVSWT+LI+GYVR G G  AL LF +M+  G++P+QFTF            L+HGK
Sbjct: 272  PEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGK 331

Query: 1412 QIHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLAQH 1233
            +IH Y+IR   +PNAIV+SSLIDMYSK GSL     VF   DDK D V WNTM+S LAQH
Sbjct: 332  EIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQH 391

Query: 1232 GLGDECIHLFHHMQRLGTKPNRITLVVILNACSHSGLVDEGIQLFESMTQVHGITADQEH 1053
            GLG + + +   M +   +PNR TLVVILNACSHSGLV+EG++ FESMT  HGI  DQEH
Sbjct: 392  GLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEH 451

Query: 1052 YACLVDLFGRAGRFDEVKDLLQKMSCKPDGRVWNAILGACKIHGNTELGRIAAEHLIDLE 873
            YACL+DL GRAG F E+   +++M  +PD  +WNAILG C+IHGN ELG+ AA+ LI L+
Sbjct: 452  YACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLD 511

Query: 872  PQSSAAYVLLSNIYALSGRWKSVEKVRHLMNRRQVKKEQAISWVEVESKVHSFTVFD--Q 699
            P+SSA Y+LLS+IYA  G+W+ VEK+R +M +R+V KE+A+SW+E+E KV +FTV D   
Sbjct: 512  PESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSH 571

Query: 698  LHPLKDEIYLALEQLTGQMDDD 633
             H  K+EIY  L  L   ++++
Sbjct: 572  AHARKEEIYFILHNLAAVIEEE 593



 Score =  132 bits (331), Expect = 4e-28
 Identities = 99/369 (26%), Positives = 167/369 (45%), Gaps = 42/369 (11%)
 Frame = -1

Query: 1769 NLVISSSIVDAYAKSGVIGDGKKMFDEMPDRDVLAWTTLVSGYAKVGDMEMARRLFDEIP 1590
            N ++S+ ++  Y K G   D  K+FD+M  R++ +W  +VSGY K G +  AR +FD +P
Sbjct: 81   NTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGYVKSGMLVRARVVFDSMP 140

Query: 1589 EPNPVSWTSLISGYVRSGLGPEALKLFSEMMIRGIRPDQFTFXXXXXXXXXXXXLKHGKQ 1410
            E + VSW +++ GY + G   EAL  + E    GI+ ++F+F            L+  +Q
Sbjct: 141  ERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSFAGLLTACVKSRQLQLNRQ 200

Query: 1409 IHSYLIRRVFKPNAIVVSSLIDMYSKCGSLGVGRSVFDQMDDKLDIVLWNTMLSTLA--- 1239
             H  ++   F  N ++  S+ID Y+KCG +   +  FD+M  K DI +W T++S  A   
Sbjct: 201  AHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVK-DIHIWTTLISGYAKLG 259

Query: 1238 ----------------------------QHGLGDECIHLFHHMQRLGTKPNRITLVVILN 1143
                                        + G G+  + LF  M  LG KP + T    L 
Sbjct: 260  DMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLC 319

Query: 1142 ACSHSGLVDEGIQLFESMTQVHGITADQEHYACLVDLFGRAGRFDEVKDLLQKMSCKPDG 963
            A +    +  G ++   M + + +  +    + L+D++ ++G  +  + + +    K D 
Sbjct: 320  ASASIASLRHGKEIHGYMIRTN-VRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDC 378

Query: 962  RVWNAILGACKIHGNTELGRIAAEHLIDL-----EPQSSAAYVLLSNIYALSG------R 816
              WN ++ A   HG   LG  A   L D+     +P  +   V+L N  + SG      R
Sbjct: 379  VFWNTMISALAQHG---LGHKALRMLDDMIKFRVQPNRTTLVVIL-NACSHSGLVEEGLR 434

Query: 815  WKSVEKVRH 789
            W     V+H
Sbjct: 435  WFESMTVQH 443