BLASTX nr result
ID: Coptis24_contig00009410
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00009410
(1391 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 ... 336 7e-90
ref|XP_002328701.1| predicted protein [Populus trichocarpa] gi|2... 336 7e-90
ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinu... 334 3e-89
ref|XP_003550454.1| PREDICTED: ATP-dependent RNA helicase DHX29-... 306 6e-81
gb|AAG50701.1|AC079604_8 hypothetical protein [Arabidopsis thali... 282 1e-73
>ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera]
gi|297739540|emb|CBI29722.3| unnamed protein product
[Vitis vinifera]
Length = 1458
Score = 336 bits (862), Expect = 7e-90
Identities = 209/461 (45%), Positives = 271/461 (58%), Gaps = 20/461 (4%)
Frame = -2
Query: 1324 SSSNASAGPKLQISTENEQXXXXXXXXXXXXXDQPVTTTIDN-VSKSQKAKRLRTVYEKL 1148
S S SAGPKLQIS ENE D+ +SK+QKAK+LR+VYEKL
Sbjct: 19 SKSQTSAGPKLQISAENENRLRRLLLNSGRSGPASSPAPADDTLSKAQKAKKLRSVYEKL 78
Query: 1147 SVEGFTSDQIETSLSALNEDGTFEAALDWLCLNIDGNELPLKFSRGASLN-DQGACISII 971
S EGF++D IE +LSAL E TFE+ALDWLC N+ NELPLKFS G SL+ ++G I II
Sbjct: 79 SCEGFSNDHIELALSALKEGATFESALDWLCFNLSSNELPLKFSSGTSLHANEGGSIGII 138
Query: 970 STAREDWVPPIHDPVIQDEGKVAEVSYKIKARVDEDTLDVRQPSQADWIRQYMXXXXXXX 791
STAREDW P ++ ++ +V+ +S +IK R D+D++D RQ SQADWIRQY+
Sbjct: 139 STAREDWTPSVYSSGNIEDDEVSGISIRIKGRRDDDSVDSRQQSQADWIRQYV--AQQEE 196
Query: 790 XXXETLATD-VSGTSLEEVSDPSARAESIAKEYHIARLEAMNAKARGDKKTQEISGNKIR 614
+T D V S ++V++P + E+IAKEYH ARLEA++AK +GDKK QE +G+ IR
Sbjct: 197 DESKTWEDDAVDDYSTKKVAEPRS-YETIAKEYHAARLEALSAKEKGDKKGQEQAGHIIR 255
Query: 613 QLKQEMSNLGLSDDILTPGLEKEYASYCMSEGSVSDFNVCEGLEMINLCDTENRG----- 449
+LKQE+S LGLSD+ L G E+AS SE + + E I LC+ E
Sbjct: 256 KLKQELSALGLSDNSLESGFRYEHASGFASEDMSYNSMPEKHPEAITLCEVEGGSVMHPS 315
Query: 448 ------------NTTGDEIEPPDXXXXXXXXXXXXXXEPDVELNSLFSEDTSFNEILSPE 305
++T + DVEL++ F ED +E+L E
Sbjct: 316 ESTFDGSIKECFSSTELSMNSVSSSVPLEERIAAQEDSGDVELSNFF-EDAPSSEVLPHE 374
Query: 304 VVKPQKKGKVAQLSSKHNLEKIDGIWKKGDSPKIPKAALQQLCQRSGWGAPKFTKLPATG 125
V+K Q K K+ +LSS NLEK++GIWKKGD KIPKA L QLCQRSGW APK K+
Sbjct: 375 VLKLQNKEKMKELSSGKNLEKLEGIWKKGDPQKIPKAVLHQLCQRSGWEAPKLNKVLGKE 434
Query: 124 ERFSYSVSIVRTAXXXXXXXXXXGLVTLQLPDINETFESAE 2
F Y+VS++R + GL TL+LPD E FESAE
Sbjct: 435 NGFCYAVSVLRKSTGRGKSRKAGGLTTLELPDQLEAFESAE 475
>ref|XP_002328701.1| predicted protein [Populus trichocarpa] gi|222838999|gb|EEE77350.1|
predicted protein [Populus trichocarpa]
Length = 870
Score = 336 bits (862), Expect = 7e-90
Identities = 205/466 (43%), Positives = 272/466 (58%), Gaps = 25/466 (5%)
Frame = -2
Query: 1324 SSSNASAGPKLQISTENEQXXXXXXXXXXXXXDQPVTTT--IDNVSKSQKAKRLRTVYEK 1151
S+S++++GP+LQIS ENE T T +++SK+QKAK+L+ +YEK
Sbjct: 20 SNSSSNSGPRLQISAENENRLRRLLLNSTTTPPLQTTVTDNTNSLSKAQKAKKLKNIYEK 79
Query: 1150 LSVEGFTSDQIETSLSALNEDGTFEAALDWLCLNIDGNELPLKFSRGASLN-DQGA-CIS 977
LS EGF++D IE +LS+L ++ TFE ALDWLCLN+ GNELPLKFS G SLN D+G +S
Sbjct: 80 LSCEGFSNDHIELALSSLKDNATFETALDWLCLNLAGNELPLKFSGGTSLNSDRGEWAVS 139
Query: 976 IISTAREDWVPPIHDPV-IQDEGKVAEVSYKIKARVDED-----TLDVRQPSQADWIRQY 815
++STAREDWVP + ++ E + V + KAR DE+ LD RQPSQADWIRQY
Sbjct: 140 VVSTAREDWVPYVDSSRRVEGEEEEQRVLVRTKARWDEEDGDGNVLDFRQPSQADWIRQY 199
Query: 814 MXXXXXXXXXXETLATDVSGTSLEEVSDPSARA-ESIAKEYHIARLEAMNAKARGDKKTQ 638
+ + + E+ SDP R + IAKEYH RLEA AK +GDKK+Q
Sbjct: 200 VEQQE-----------EEESKTWEDDSDPQPRTYDVIAKEYHAVRLEATKAKEKGDKKSQ 248
Query: 637 EISGNKIRQLKQEMSNLGLSDDILTPGLEKEYASYCMSEGSVSDFNVCEGLEMINLCDTE 458
E +G+ IR+LKQEMS LGLS D+L E+++ +SE S CE LE I D E
Sbjct: 249 EQAGHAIRKLKQEMSALGLSLDLL----EQDFGHQHVSEDMFSTSTPCEHLEAITSLDVE 304
Query: 457 NRGNTTGDEIEPPDXXXXXXXXXXXXXXEP--------------DVELNSLFSEDTSFNE 320
++ D DVE+ F +D S N+
Sbjct: 305 GDSTIVESIVDENDLESSSSIGFPLNPVPSSVPLEGEIVSEESEDVEIGDFFIDDASSND 364
Query: 319 ILSPEVVKPQKKGKVAQLSSKHNLEKIDGIWKKGDSPKIPKAALQQLCQRSGWGAPKFTK 140
L P +++ QK+ K+ +L S+ NLEK++GIWKKGD KIPKA L QLCQ+SGW APKF K
Sbjct: 365 ALPPGILELQKREKMRELCSEKNLEKLEGIWKKGDPQKIPKAVLHQLCQKSGWEAPKFNK 424
Query: 139 LPATGERFSYSVSIVRTAXXXXXXXXXXGLVTLQLPDINETFESAE 2
+ FSY+VSI+R A GL++LQLPD ++TFESAE
Sbjct: 425 VLERELGFSYAVSILRKASGRGKSRKAGGLISLQLPDQDDTFESAE 470
>ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223531539|gb|EEF33369.1| ATP-dependent RNA helicase,
putative [Ricinus communis]
Length = 1509
Score = 334 bits (857), Expect = 3e-89
Identities = 205/464 (44%), Positives = 274/464 (59%), Gaps = 23/464 (4%)
Frame = -2
Query: 1324 SSSNASAGPKLQISTENEQXXXXXXXXXXXXXDQPVTTTIDNVSKSQKAKRLRTVYEKLS 1145
SS+++S+GP+LQIS ENE QP +N+SK+QKAKRL+ VYEKLS
Sbjct: 17 SSTSSSSGPRLQISAENENRLRRLLLNSNRST-QPTPPVQENLSKAQKAKRLKNVYEKLS 75
Query: 1144 VEGFTSDQIETSLSALNEDGTFEAALDWLCLNIDGNELPLKFSRGASLNDQGACISIIST 965
EGF++DQIE +L++L ++ TFE+ALDWLC N+ GNELP+KFS G SL +S++ST
Sbjct: 76 CEGFSNDQIELALTSLKDNATFESALDWLCFNLPGNELPVKFSSGTSLYASEGSVSVVST 135
Query: 964 AREDWVPPIHDPVIQDEGKVAEVSYKIKARVDED---TLDVRQP-SQADWIRQYMXXXXX 797
ARED P ++ +++ +V +IK R D+D +RQP SQADWIRQYM
Sbjct: 136 AREDRTPTVNAANTEEDVQVQAAFVRIKGRRDDDDDNDTSLRQPSSQADWIRQYMEQQEE 195
Query: 796 XXXXXETLATDVSGTSLEEVSDPSARAESIAKEYHIARLEAMNAKARGDKKTQEISGNKI 617
V G+ ++V P + ++IAKEY+ ARLEA+ AK +GDK++QE SG+ I
Sbjct: 196 EESETWE-DYAVDGSFTDKVPVPRS-YDAIAKEYYAARLEAVKAKEKGDKRSQEQSGHII 253
Query: 616 RQLKQEMSNLGLSDDILTPGLEKEYASYCMSEGSVSDFNVCEGLEMINLCDTEN------ 455
R+LKQE+S+LGLSDD+L E+ S + EG + E L D E+
Sbjct: 254 RKLKQELSSLGLSDDVLAQEFVHEHTSAFVPEGISTSSMPHEQLLAKTSSDAESNLVFVL 313
Query: 454 ---RGNTTGDEIEPPD----------XXXXXXXXXXXXXXEPDVELNSLFSEDTSFNEIL 314
+++E P D+EL F ED + NE L
Sbjct: 314 PSEELPADPNDMESPSYMEFPVELAPSSVPVQGKIDLEDETADMELGGFFMEDATSNEAL 373
Query: 313 SPEVVKPQKKGKVAQLSSKHNLEKIDGIWKKGDSPKIPKAALQQLCQRSGWGAPKFTKLP 134
PEV++ QKK K+ +LSS+ NLEK+DGIWKKGD KIPKA L QLCQ+SGW APKF K+
Sbjct: 374 PPEVLELQKKEKMKKLSSEKNLEKLDGIWKKGDPKKIPKAVLHQLCQKSGWEAPKFKKVH 433
Query: 133 ATGERFSYSVSIVRTAXXXXXXXXXXGLVTLQLPDINETFESAE 2
+ FSYSVSI+R A GL+TLQLPD +ET+ESAE
Sbjct: 434 ERRKGFSYSVSILRKASGRGKSRKAGGLITLQLPDQDETYESAE 477
>ref|XP_003550454.1| PREDICTED: ATP-dependent RNA helicase DHX29-like [Glycine max]
Length = 1528
Score = 306 bits (785), Expect = 6e-81
Identities = 199/455 (43%), Positives = 250/455 (54%), Gaps = 16/455 (3%)
Frame = -2
Query: 1318 SNASAGPKLQISTENEQXXXXXXXXXXXXXDQPVTTTI--DNVSKSQKAKRLRTVYEKLS 1145
+ A +GPKLQIS ENE +P T T D ++K+QKAK+L+ VYEKLS
Sbjct: 10 AKAQSGPKLQISAENENRLRRLLLNSA----RPTTATAADDTLTKAQKAKKLKAVYEKLS 65
Query: 1144 VEGFTSDQIETSLSALNEDGTFEAALDWLCLNIDGNELPLKFSRGASLNDQGACISIIST 965
EGF + QIE SLSAL E TFE+ALDWLCLN+ GNELPLKFS G S DQG + +IS
Sbjct: 66 CEGFGNHQIELSLSALREAATFESALDWLCLNLPGNELPLKFSTGISHYDQGGSVGVISN 125
Query: 964 AREDWVPPIHDPVIQDEGKVAEVSYKIKAR-VDEDTLDVRQPSQADWIRQYMXXXXXXXX 788
P + I E + E I+ + ++DTLD R SQADWIRQY+
Sbjct: 126 Q-----PAVDAASITIEEEAPESPVLIRRQWKNDDTLDSRLTSQADWIRQYVEQQEEDES 180
Query: 787 XXETLATDVSGTSLEEVSDPSARAESIAKEYHIARLEAMNAKARGDKKTQEISGNKIRQL 608
G S + + IAKEY ARLEA AK + DK QE +G+ IR+L
Sbjct: 181 ESWEDDIFFDGRSAKHKPCEPRSYDVIAKEYLAARLEATKAKEKRDKNRQEQAGHIIRKL 240
Query: 607 KQEMSNLGLSDDILTPGLEKEYASYCMSEGSVSDFNVCEGLEMINLCDTEN--------- 455
KQE+S LGLSDD L E E + SE + + + + CDTE
Sbjct: 241 KQELSALGLSDDSLALEHEHEISYTFKSERASTGPEAVDCFKEKTPCDTEGLASGKTEVA 300
Query: 454 ----RGNTTGDEIEPPDXXXXXXXXXXXXXXEPDVELNSLFSEDTSFNEILSPEVVKPQK 287
++ + + D+EL LF ED S +EIL P+++K QK
Sbjct: 301 ESDVESHSMVEHLVKSGSLVVHVEKDSAQGEVGDIELGGLFLEDASPSEILPPDILKVQK 360
Query: 286 KGKVAQLSSKHNLEKIDGIWKKGDSPKIPKAALQQLCQRSGWGAPKFTKLPATGERFSYS 107
+ K+ +LS K NL+K+DGIWKKGD KIPKA L QLCQ+SGW APKF K+ G+ FSY+
Sbjct: 361 QEKIRRLSEK-NLDKLDGIWKKGDPQKIPKAVLHQLCQKSGWEAPKFDKILGRGKIFSYT 419
Query: 106 VSIVRTAXXXXXXXXXXGLVTLQLPDINETFESAE 2
VSI+R A GLVTLQLPD NET ESAE
Sbjct: 420 VSILRKASGRGKNRKAGGLVTLQLPDQNETVESAE 454
>gb|AAG50701.1|AC079604_8 hypothetical protein [Arabidopsis thaliana]
Length = 1453
Score = 282 bits (722), Expect = 1e-73
Identities = 184/453 (40%), Positives = 246/453 (54%), Gaps = 17/453 (3%)
Frame = -2
Query: 1309 SAGPKLQISTENEQXXXXXXXXXXXXXDQPVTTTIDNVSKSQKAKRLRTVYEKLSVEGFT 1130
S+GPKLQIS ENE +++SK+QK K+L VYEKLS EGF
Sbjct: 29 SSGPKLQISAENEDRLRRLLLNSGRSGPSIPAPISNSLSKAQKTKKLNNVYEKLSCEGFV 88
Query: 1129 SDQIETSLSALNEDGTFEAALDWLCLNIDGNELPLKFSRGAS-LNDQGACISIISTARED 953
DQIE +LS+L + TFEAALDWLCLN+ +ELP+KFS GAS G + +IST+R+D
Sbjct: 89 DDQIELALSSLRDGATFEAALDWLCLNLPSHELPVKFSTGASRFPSTGGSVGVISTSRDD 148
Query: 952 WVPPIHDPVIQDEGKVAEVSYKIKARVD-EDTLDVRQPSQADWIRQYMXXXXXXXXXXET 776
W V +E + A V ++K + D EDTL + SQADWIRQYM
Sbjct: 149 WNDSTDSSVRVEEEEPA-VFVRVKGKQDEEDTLSSDKSSQADWIRQYMMRQEEEELECW- 206
Query: 775 LATDVSGTSLEEVSDPSARAESIAKEYHIARLEAMNAKARGDKKTQEISGNKIRQLKQEM 596
+V G + IAKEY+ AR +A+ AK + DK+ QE +G IR+LKQE+
Sbjct: 207 -EDEVDGIDPRNKVSGPRPFDVIAKEYYSARSDAIKAKEKRDKRGQEQAGLAIRKLKQEI 265
Query: 595 SNLGLSDDILTPGLEKEYASYCMSEGS----VSDFNVCEGLE----MINLCDTENRGNTT 440
S+LGLS+ +L ++E+A +E +SD N+ E ++ + + D
Sbjct: 266 SDLGLSEAMLESEFQREHAFESATEQESTCPISD-NLHESVDADDVSVQMLDNLTLNTNP 324
Query: 439 GDEIEPPD-------XXXXXXXXXXXXXXEPDVELNSLFSEDTSFNEILSPEVVKPQKKG 281
+ E + DVEL F E+ +EI E+++ QK+
Sbjct: 325 AESYESEEIQTKALPSSSSGQDFVASDEDSEDVELGDTFFEEIPPSEISPHELLELQKEE 384
Query: 280 KVAQLSSKHNLEKIDGIWKKGDSPKIPKAALQQLCQRSGWGAPKFTKLPATGERFSYSVS 101
K+ +L S+ NL K+DGIWKKG++ KIPKA L QLCQRSGW APKF K G FSY+VS
Sbjct: 385 KMRELRSEKNLGKLDGIWKKGEAQKIPKAFLHQLCQRSGWEAPKFNKETGEGRNFSYTVS 444
Query: 100 IVRTAXXXXXXXXXXGLVTLQLPDINETFESAE 2
I+R A GLVTLQLP +E FES E
Sbjct: 445 ILRKASGRGKNRQAGGLVTLQLPPKDENFESIE 477