BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009374
         (1366 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531352.1| ribosomal RNA methyltransferase, putative [R...   514   e-165
ref|XP_002278921.1| PREDICTED: putative ribosomal RNA methyltran...   506   e-163
ref|XP_002325916.1| predicted protein [Populus trichocarpa] gi|2...   501   e-162
ref|XP_004137730.1| PREDICTED: putative ribosomal RNA methyltran...   503   e-160
ref|XP_003543050.1| PREDICTED: putative ribosomal RNA methyltran...   497   e-159

>ref|XP_002531352.1| ribosomal RNA methyltransferase, putative [Ricinus communis]
           gi|223529050|gb|EEF31036.1| ribosomal RNA
           methyltransferase, putative [Ricinus communis]
          Length = 316

 Score =  514 bits (1323), Expect(2) = e-165
 Identities = 250/267 (93%), Positives = 262/267 (98%)
 Frame = +2

Query: 68  MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 247
           MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF+GVK VVDLCAAPGSWSQVLS
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60

Query: 248 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 427
           RK+YLPAKL+ + RD++LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVI+HFDGCKA
Sbjct: 61  RKLYLPAKLTQDSRDDNLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120

Query: 428 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 607
           DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIV+HILR GGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILREGGKFIAKIFRGKDTSLLYCQL 180

Query: 608 KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 787
           KLFF VVTFAKPKSSRNSSIEAFAVCENYSPPEGFNP+DLHRLLEKVGSP+G+DDLDCSS
Sbjct: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGMDDLDCSS 240

Query: 788 GWLEGPNKVYIPFLACGDLSGFDSDRS 868
           GWLEGPNKVYIPFLACGDLSG+DSDRS
Sbjct: 241 GWLEGPNKVYIPFLACGDLSGYDSDRS 267



 Score = 95.5 bits (236), Expect(2) = e-165
 Identities = 45/50 (90%), Positives = 48/50 (96%)
 Frame = +1

Query: 874  SYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKKASSHGVSELEKLSLDS 1023
            SYPLPKVA+GTYQSLDPVQPPIAPPYKRALEMKKAS+ G+ ELEKLSLDS
Sbjct: 267  SYPLPKVAEGTYQSLDPVQPPIAPPYKRALEMKKASNRGIRELEKLSLDS 316


>ref|XP_002278921.1| PREDICTED: putative ribosomal RNA methyltransferase 1 [Vitis
           vinifera] gi|297740237|emb|CBI30419.3| unnamed protein
           product [Vitis vinifera]
          Length = 316

 Score =  506 bits (1302), Expect(2) = e-163
 Identities = 245/267 (91%), Positives = 258/267 (96%)
 Frame = +2

Query: 68  MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 247
           MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF+GVK VVDLCAAPGSWSQVLS
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60

Query: 248 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 427
           RK++LPAKLSP  RD DLPLIVAIDLQPMAPIEGVIQVQGDITNARTAE+VI+HFDGCKA
Sbjct: 61  RKLFLPAKLSPASRDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAELVIRHFDGCKA 120

Query: 428 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 607
           DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIV+H+L+ GGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKKGGKFIAKIFRGKDTSLLYCQL 180

Query: 608 KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 787
           KLFF +VTFAKPKSSRNSSIEAFAVCENYSPPEGFN +DLHRLLEKVGSP+G DDLDC S
Sbjct: 181 KLFFPIVTFAKPKSSRNSSIEAFAVCENYSPPEGFNEKDLHRLLEKVGSPSGADDLDCRS 240

Query: 788 GWLEGPNKVYIPFLACGDLSGFDSDRS 868
           GWLEGPNKVYIPFLACGDLSG+DSD+S
Sbjct: 241 GWLEGPNKVYIPFLACGDLSGYDSDQS 267



 Score = 97.4 bits (241), Expect(2) = e-163
 Identities = 45/50 (90%), Positives = 49/50 (98%)
 Frame = +1

Query: 874  SYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKKASSHGVSELEKLSLDS 1023
            SYPLPKVA+GTYQSLDPVQPPIAPPYKRALE+KKASSHG+ ELE+LSLDS
Sbjct: 267  SYPLPKVAEGTYQSLDPVQPPIAPPYKRALELKKASSHGIRELERLSLDS 316


>ref|XP_002325916.1| predicted protein [Populus trichocarpa] gi|222862791|gb|EEF00298.1|
           predicted protein [Populus trichocarpa]
          Length = 316

 Score =  501 bits (1289), Expect(2) = e-162
 Identities = 244/267 (91%), Positives = 258/267 (96%)
 Frame = +2

Query: 68  MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 247
           MG+ASRDKRDIYYRKAKEEGWRARSAFKL+QIDEEFNIF+GVK VVDLCAAPGSWSQVLS
Sbjct: 1   MGRASRDKRDIYYRKAKEEGWRARSAFKLIQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60

Query: 248 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 427
           RK+YLPAKLSP+ RD DLPLIVAIDLQPMA IEGVIQVQGDITNARTAEVVI+HFDG KA
Sbjct: 61  RKLYLPAKLSPDSRDNDLPLIVAIDLQPMALIEGVIQVQGDITNARTAEVVIRHFDGSKA 120

Query: 428 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 607
           DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIV+H+L+ GGKFIAKIFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHVLKEGGKFIAKIFRGKDTSLLYCQL 180

Query: 608 KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 787
           KLFF VVTFAKPKSSRNSSIEAFAVCENYSPPEGF+P+DLHRLLEKVGSP+G DDLDCSS
Sbjct: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFDPKDLHRLLEKVGSPSGADDLDCSS 240

Query: 788 GWLEGPNKVYIPFLACGDLSGFDSDRS 868
           GWLEG +KVYIPFLACGDLSG+DSDRS
Sbjct: 241 GWLEGASKVYIPFLACGDLSGYDSDRS 267



 Score = 99.4 bits (246), Expect(2) = e-162
 Identities = 48/50 (96%), Positives = 48/50 (96%)
 Frame = +1

Query: 874  SYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKKASSHGVSELEKLSLDS 1023
            SYPLPK ADGTYQSLDPVQPPIAPPYKRALEMKKASSHGV ELEKLSLDS
Sbjct: 267  SYPLPKDADGTYQSLDPVQPPIAPPYKRALEMKKASSHGVKELEKLSLDS 316


>ref|XP_004137730.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Cucumis
           sativus] gi|449483463|ref|XP_004156599.1| PREDICTED:
           putative ribosomal RNA methyltransferase 1-like [Cucumis
           sativus]
          Length = 316

 Score =  503 bits (1295), Expect(2) = e-160
 Identities = 247/267 (92%), Positives = 258/267 (96%)
 Frame = +2

Query: 68  MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 247
           MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIF+GVK VVDLCAAPGSWSQVLS
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60

Query: 248 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 427
           RK+YLPAKLSP+ +D +LPLIVAIDLQPMAPIEGVI+VQGDITNARTAEVVI+HFDGCKA
Sbjct: 61  RKLYLPAKLSPDLKDGELPLIVAIDLQPMAPIEGVIEVQGDITNARTAEVVIRHFDGCKA 120

Query: 428 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 607
           DLVVCDGAPDVTGLHDMDEFVQ QLILAGLTIV+HILR GGKFIAKIFRGKDTSLLY QL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQFQLILAGLTIVTHILREGGKFIAKIFRGKDTSLLYSQL 180

Query: 608 KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 787
           KLFF VVTFAKPKSSRNSSIEAFAVCENYSPPEGFN +DLHRLLEKVGSP+G DDLDCSS
Sbjct: 181 KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNSKDLHRLLEKVGSPSGGDDLDCSS 240

Query: 788 GWLEGPNKVYIPFLACGDLSGFDSDRS 868
           GWLEGPNKVYIPFLACGDLSG+DSDRS
Sbjct: 241 GWLEGPNKVYIPFLACGDLSGYDSDRS 267



 Score = 91.3 bits (225), Expect(2) = e-160
 Identities = 43/50 (86%), Positives = 47/50 (94%)
 Frame = +1

Query: 874  SYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKKASSHGVSELEKLSLDS 1023
            SYPLP+ A+GTY+SLDPVQPPIAPPYKRALEMKKASS G+ ELEKLSLDS
Sbjct: 267  SYPLPRGAEGTYRSLDPVQPPIAPPYKRALEMKKASSQGIRELEKLSLDS 316


>ref|XP_003543050.1| PREDICTED: putative ribosomal RNA methyltransferase 1-like [Glycine
           max]
          Length = 313

 Score =  497 bits (1279), Expect(2) = e-159
 Identities = 242/267 (90%), Positives = 256/267 (95%)
 Frame = +2

Query: 68  MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFQGVKHVVDLCAAPGSWSQVLS 247
           MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFN+F+GVK VVDLCAAPGSWSQVLS
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNLFEGVKRVVDLCAAPGSWSQVLS 60

Query: 248 RKIYLPAKLSPEQRDEDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIKHFDGCKA 427
           RK+YLPAKL+P+ +DE+LPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVI+HFDGCKA
Sbjct: 61  RKLYLPAKLAPDAKDENLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120

Query: 428 DLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVSHILRVGGKFIAKIFRGKDTSLLYCQL 607
           DLVVCDGAPDVTGLHDMDEFVQSQLIL GLTIV+H+L+ GGK    IFRGKDTSLLYCQL
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLILPGLTIVTHVLKEGGKL---IFRGKDTSLLYCQL 177

Query: 608 KLFFSVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPEDLHRLLEKVGSPTGVDDLDCSS 787
           KLFF VVTFAKPKSSRNSSIEAFAVCENYSPPEGFNP+DLHRLLEKVGSP+GVDD DC S
Sbjct: 178 KLFFPVVTFAKPKSSRNSSIEAFAVCENYSPPEGFNPKDLHRLLEKVGSPSGVDDTDCCS 237

Query: 788 GWLEGPNKVYIPFLACGDLSGFDSDRS 868
           GWLEGPNKVYIPFLACGDLSG+DSDRS
Sbjct: 238 GWLEGPNKVYIPFLACGDLSGYDSDRS 264



 Score = 92.8 bits (229), Expect(2) = e-159
 Identities = 45/50 (90%), Positives = 46/50 (92%)
 Frame = +1

Query: 874  SYPLPKVADGTYQSLDPVQPPIAPPYKRALEMKKASSHGVSELEKLSLDS 1023
            SYPLPKVA GTYQSLDPVQPPIAPPYKRALE+KKASS G  ELEKLSLDS
Sbjct: 264  SYPLPKVAGGTYQSLDPVQPPIAPPYKRALELKKASSQGFRELEKLSLDS 313