BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009371
         (1706 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272768.1| PREDICTED: transcription elongation factor A...   451   e-124
ref|XP_004138392.1| PREDICTED: transcription elongation factor A...   422   e-115
ref|XP_002308256.1| predicted protein [Populus trichocarpa] gi|2...   413   e-113
ref|XP_002528699.1| transcription elongation factor s-II, putati...   395   e-107
ref|XP_003523285.1| PREDICTED: putative transcription elongation...   389   e-105

>ref|XP_002272768.1| PREDICTED: transcription elongation factor A protein 3 [Vitis
            vinifera]
          Length = 367

 Score =  451 bits (1160), Expect = e-124
 Identities = 233/374 (62%), Positives = 279/374 (74%), Gaps = 3/374 (0%)
 Frame = +2

Query: 287  KKELLELFETXXXXXXXXXXXXXXX---EESRCVDALKRLKIIPVTMQLLVDTQVGKRLR 457
            ++EL+ELFE+                  E  RCVDALK+LK  PVT + L  TQVGKRLR
Sbjct: 2    ERELVELFESAKKAADAAATDGVSSNGPEVGRCVDALKQLKSFPVTYEALASTQVGKRLR 61

Query: 458  HLTKHPKEKIQAVASDLLEVWKKIVLEENSKIKNNGNSETKASAKVEISKGESVKVEKIQ 637
            HLTKHPK KIQ++ASDLLE+WKK+V++E ++ K NG  +   SAK E+SK E+VKVE   
Sbjct: 62   HLTKHPKGKIQSLASDLLEMWKKVVIDE-TRNKKNGGLDNNGSAKAEVSKTETVKVEMAH 120

Query: 638  IGDSLKVEKVSRAETIKVEKSNRTEIIKSEKVSRSETVKVEKIGGVEPMKVDRMPXXXXX 817
                +KVEK S+ ET+K+EK +R    K   VSRSET+KVEK       +V+ +      
Sbjct: 121  KAGGVKVEKASKVETVKIEKFDRGSSTKPGSVSRSETIKVEK-------RVENVDERKQF 173

Query: 818  XXXXXXVQAPKGPLKLTSMVKCNDSNRDKVRELLAEAFSRVCKEADEDMLDEVNAFDPIR 997
                   QA  GP KLT+M+KCND+ RDKVRELLAEA  +V  EADED+ DEVNA DPIR
Sbjct: 174  SSVKKPPQASNGPPKLTAMIKCNDALRDKVRELLAEALFKVASEADEDIKDEVNACDPIR 233

Query: 998  VAVSVESVLFEKMGRQSGPQKSKYRSIMFNIRDENNPDLRRRVLLGHVKPEKLINMTAAE 1177
            VAVSVESV+FEKMGR +G QK KYRSIMFNI+D NNPDLRR+VLLG VKP++LINM+  E
Sbjct: 234  VAVSVESVMFEKMGRSNGTQKFKYRSIMFNIKDPNNPDLRRKVLLGEVKPDRLINMSPEE 293

Query: 1178 MASDKRKQENNQIQEKAMFDCEREAAPKATTDQFRCGRCGQRKTTYYQLQTRSADEPMTT 1357
            MAS++R++EN+QI+EKA+FDCER   PKATTDQF+CGRCGQRKTTYYQLQTRSADEPMTT
Sbjct: 294  MASNQRQRENSQIKEKALFDCERGGPPKATTDQFKCGRCGQRKTTYYQLQTRSADEPMTT 353

Query: 1358 FVTCVNCNNHWKFC 1399
            FVTCVNCNNHWKFC
Sbjct: 354  FVTCVNCNNHWKFC 367


>ref|XP_004138392.1| PREDICTED: transcription elongation factor A protein 3-like [Cucumis
            sativus]
          Length = 369

 Score =  422 bits (1085), Expect = e-115
 Identities = 222/377 (58%), Positives = 274/377 (72%), Gaps = 6/377 (1%)
 Frame = +2

Query: 287  KKELLELFETXXXXXXXXXXXXXXX--EESRCVDALKRLKIIPVTMQLLVDTQVGKRLRH 460
            + EL+ELFE                  EESRC+DAL++LK  PVT Q+LV TQVGKRLRH
Sbjct: 2    ENELVELFEAAKKAADAAAAPSNDGGAEESRCLDALRQLKKFPVTYQILVSTQVGKRLRH 61

Query: 461  LTKHPKEKIQAVASDLLEVWKKIVLEENSKIKNNGNSETKASAKVEISKGESVKVEKIQI 640
            LTKHPK+KIQ  ASDL+E+WK+IV++E +K K NGN+ +K S K+     ESVKVEK Q 
Sbjct: 62   LTKHPKKKIQEHASDLIEMWKEIVIKETNKNKKNGNASSKDSPKIGSPSAESVKVEKFQK 121

Query: 641  GDSLKVEKVSRAETIKVEKSNRTEIIKSEK----VSRSETVKVEKIGGVEPMKVDRMPXX 808
              S+KVE+VS+ E  + +++  T  +K  K    VS   +VKVEK   +  +KV+R+   
Sbjct: 122  SSSMKVERVSKVE--QFDRNGATSSVKYSKSESVVSERNSVKVEKTDSM--VKVERVVKE 177

Query: 809  XXXXXXXXXVQAPKGPLKLTSMVKCNDSNRDKVRELLAEAFSRVCKEADEDMLDEVNAFD 988
                           P KLTSM+K  D+ RDK+RELL EAFS+V  EADE+ +DEVNA D
Sbjct: 178  EKKPS-----SGAAAPPKLTSMIKSKDAARDKIRELLFEAFSKVPGEADEEFMDEVNASD 232

Query: 989  PIRVAVSVESVLFEKMGRQSGPQKSKYRSIMFNIRDENNPDLRRRVLLGHVKPEKLINMT 1168
            PIRVAVSVESV+FE  G  +G QK+KYRSIMFN++D  NPD RR+VLLG +KPE++INM+
Sbjct: 233  PIRVAVSVESVMFENWGGSTGAQKAKYRSIMFNLKDPKNPDFRRKVLLGLIKPERMINMS 292

Query: 1169 AAEMASDKRKQENNQIQEKAMFDCEREAAPKATTDQFRCGRCGQRKTTYYQLQTRSADEP 1348
             A+MASD+RK+EN +I +KA+FDCER  APKATTDQF+CGRCGQRKTTYYQLQTRSADEP
Sbjct: 293  TADMASDQRKRENEEIAQKALFDCERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSADEP 352

Query: 1349 MTTFVTCVNCNNHWKFC 1399
            MTTFVTCVNCNNHWKFC
Sbjct: 353  MTTFVTCVNCNNHWKFC 369


>ref|XP_002308256.1| predicted protein [Populus trichocarpa] gi|222854232|gb|EEE91779.1|
            predicted protein [Populus trichocarpa]
          Length = 352

 Score =  413 bits (1061), Expect = e-113
 Identities = 207/346 (59%), Positives = 265/346 (76%)
 Frame = +2

Query: 362  EESRCVDALKRLKIIPVTMQLLVDTQVGKRLRHLTKHPKEKIQAVASDLLEVWKKIVLEE 541
            E +RCVD+LK+L+   VT +LLV TQVGK+LR L KHPKEKI+AVASDLLE+WKK+V++E
Sbjct: 30   EVTRCVDSLKQLRKFKVTSELLVSTQVGKKLRPLAKHPKEKIRAVASDLLEMWKKMVIDE 89

Query: 542  NSKIKNNGNSETKASAKVEISKGESVKVEKIQIGDSLKVEKVSRAETIKVEKSNRTEIIK 721
              K   NG+ ++K+S K E+SK E+VKVEK++    +KVE+ S +ET+KVEK ++ + +K
Sbjct: 90   TRK--KNGSIDSKSSVKAEVSKSETVKVEKLRKTSVVKVERASTSETVKVEKMDQDKTVK 147

Query: 722  SEKVSRSETVKVEKIGGVEPMKVDRMPXXXXXXXXXXXVQAPKGPLKLTSMVKCNDSNRD 901
             EK+S+ E   ++     +P                   Q+P GP KL ++VKCND+ RD
Sbjct: 148  VEKMSKQE---IQTSSVKQPS------------------QSPIGPPKLKTLVKCNDALRD 186

Query: 902  KVRELLAEAFSRVCKEADEDMLDEVNAFDPIRVAVSVESVLFEKMGRQSGPQKSKYRSIM 1081
            K+RELLAEA S+V  EADED+ DEV A DPIRVAVSVES++FEK+GR +G QK KYRSIM
Sbjct: 187  KIRELLAEALSKVASEADEDIRDEVEACDPIRVAVSVESMMFEKLGRSNGAQKLKYRSIM 246

Query: 1082 FNIRDENNPDLRRRVLLGHVKPEKLINMTAAEMASDKRKQENNQIQEKAMFDCEREAAPK 1261
            FNI+D+NNPD RR+VLLG V+PE+L+ M   EMAS++RK+ENNQI+EK +FDCER    +
Sbjct: 247  FNIKDQNNPDFRRKVLLGEVQPERLVTMGPEEMASEQRKRENNQIKEKVLFDCERSGQAQ 306

Query: 1262 ATTDQFRCGRCGQRKTTYYQLQTRSADEPMTTFVTCVNCNNHWKFC 1399
            ATTDQF+CGRC QRK TYYQ+QTRSADEPMTT+VTCVNCNNHWKFC
Sbjct: 307  ATTDQFKCGRCRQRKCTYYQMQTRSADEPMTTYVTCVNCNNHWKFC 352


>ref|XP_002528699.1| transcription elongation factor s-II, putative [Ricinus communis]
            gi|223531871|gb|EEF33688.1| transcription elongation
            factor s-II, putative [Ricinus communis]
          Length = 342

 Score =  395 bits (1016), Expect = e-107
 Identities = 212/374 (56%), Positives = 259/374 (69%), Gaps = 3/374 (0%)
 Frame = +2

Query: 287  KKELLELFETXXXXXXXXXXXXXXX---EESRCVDALKRLKIIPVTMQLLVDTQVGKRLR 457
            ++EL+ELFE                   E  RCVDALK+LKI P++  +LV +QVGKRLR
Sbjct: 2    ERELVELFEAAKKAADAAASDGVSSNGPEVVRCVDALKQLKIFPISYDILVSSQVGKRLR 61

Query: 458  HLTKHPKEKIQAVASDLLEVWKKIVLEENSKIKNNGNSETKASAKVEISKGESVKVEKIQ 637
             LTKHP+EKIQ VASDLLE+WKKIV++E ++ K NG  + K+S K E+SK E++KVE   
Sbjct: 62   PLTKHPREKIQTVASDLLEMWKKIVIDETTR-KKNGTVDNKSSVKAEVSKVETIKVE--- 117

Query: 638  IGDSLKVEKVSRAETIKVEKSNRTEIIKSEKVSRSETVKVEKIGGVEPMKVDRMPXXXXX 817
                    KV +A T+KVEK           + R  TVKVEK    +   +D        
Sbjct: 118  --------KVQKASTVKVEK-----------IDRERTVKVEKKSEEKQQAID-------- 150

Query: 818  XXXXXXVQAPKGPLKLTSMVKCNDSNRDKVRELLAEAFSRVCKEADEDMLDEVNAFDPIR 997
                   QA   P KLT++VKCND+ RDK+RELL EA S+V  EA+ED  DE++  DPIR
Sbjct: 151  --VKKPSQASVTPPKLTAIVKCNDALRDKIRELLVEALSKVVSEANEDGRDEISKCDPIR 208

Query: 998  VAVSVESVLFEKMGRQSGPQKSKYRSIMFNIRDENNPDLRRRVLLGHVKPEKLINMTAAE 1177
            VAVSVES +FEKMGR +G QK KYRSIMFN++D NNPDLRR+VLLG VKPE+LI+MT  E
Sbjct: 209  VAVSVESAMFEKMGRSNGAQKFKYRSIMFNLKDPNNPDLRRKVLLGEVKPERLISMTPEE 268

Query: 1178 MASDKRKQENNQIQEKAMFDCEREAAPKATTDQFRCGRCGQRKTTYYQLQTRSADEPMTT 1357
            MAS +R++E NQI+EKA+FDCER    KATTDQF+C RCGQRK TYYQ+QTRSADEPMTT
Sbjct: 269  MASKERQEEINQIKEKALFDCERGGPAKATTDQFKCSRCGQRKCTYYQMQTRSADEPMTT 328

Query: 1358 FVTCVNCNNHWKFC 1399
            +VTCVNCN HWKFC
Sbjct: 329  YVTCVNCNKHWKFC 342


>ref|XP_003523285.1| PREDICTED: putative transcription elongation factor S-II-like
            [Glycine max]
          Length = 368

 Score =  389 bits (998), Expect = e-105
 Identities = 207/380 (54%), Positives = 261/380 (68%), Gaps = 9/380 (2%)
 Frame = +2

Query: 287  KKELLELFETXXXXXXXXXXXXXXXEESRCVDALKRLKIIPVTMQLLVDTQVGKRLRHLT 466
            +KEL+EL+E                EESRC+DAL++LK  PV  ++LV+TQVGK L+ LT
Sbjct: 2    EKELVELYEAAKKAADAAISGDGKHEESRCIDALEQLKKFPVNYKILVNTQVGKHLKVLT 61

Query: 467  KHPKEKIQAVASDLLEVWKKIVLEENSKIKNNGNSETKASAKVEISKG------ESVKVE 628
            KHP+ KI+A A DL+E+WK I+++E SK KN G+     SA  E SK        SVKVE
Sbjct: 62   KHPRLKIKAFAIDLIEIWKGIIIKETSKNKNGGSDSKVESANGEKSKAGKMQKSPSVKVE 121

Query: 629  KIQIGDSLKVEKVSRAETIKVEKSNRTEI---IKSEKVSRSETVKVEKIGGVEPMKVDRM 799
            K   G+++KVEK+ R  T K    N  ++   +K+EK  RS +VKVEKI   E       
Sbjct: 122  K---GETVKVEKIDRNGTTKSSSENMKKVQNDVKNEKTDRSASVKVEKIAKEEK------ 172

Query: 800  PXXXXXXXXXXXVQAPKGPLKLTSMVKCNDSNRDKVRELLAEAFSRVCKEADEDMLDEVN 979
                          +   P KL +M+K ND+ RDK+RE+L EA S+V  EADED++D VN
Sbjct: 173  ----PVSGAKKMSSSSAAPPKLKTMIKSNDATRDKIREILHEALSKVTGEADEDLVDVVN 228

Query: 980  AFDPIRVAVSVESVLFEKMGRQSGPQKSKYRSIMFNIRDENNPDLRRRVLLGHVKPEKLI 1159
              DPIRVAV+VESVLFEK G  +G QK KYRS+MFN++D NNPD RR+VLLG ++PE+LI
Sbjct: 229  NSDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDSNNPDFRRKVLLGVIEPEQLI 288

Query: 1160 NMTAAEMASDKRKQENNQIQEKAMFDCEREAAPKATTDQFRCGRCGQRKTTYYQLQTRSA 1339
            NM+ AEMAS++RKQE  +I EKA+F+CER   PKATTDQF+CGRCGQRKTTYYQ+QTRSA
Sbjct: 289  NMSTAEMASEQRKQEYQKITEKALFECERGGPPKATTDQFKCGRCGQRKTTYYQMQTRSA 348

Query: 1340 DEPMTTFVTCVNCNNHWKFC 1399
            DEPMTT+VTCV CNN WKFC
Sbjct: 349  DEPMTTYVTCVVCNNRWKFC 368