BLASTX nr result
ID: Coptis24_contig00009349
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00009349
(230 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI34156.3| unnamed protein product [Vitis vinifera] 89 3e-16
ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat... 89 3e-16
emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera] 89 3e-16
ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat... 84 1e-14
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,... 84 1e-14
>emb|CBI34156.3| unnamed protein product [Vitis vinifera]
Length = 442
Score = 89.4 bits (220), Expect = 3e-16
Identities = 40/74 (54%), Positives = 53/74 (71%)
Frame = +2
Query: 8 YGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLMV 187
+ ++DA CK+G V EA E+ MI+RG E D VTY++LMDG+CLQ M EA+ VFD+MV
Sbjct: 258 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 317
Query: 188 AIGHGPDVVSYSIL 229
G PDV+SY+ L
Sbjct: 318 RKGFAPDVISYTTL 331
Score = 55.5 bits (132), Expect = 5e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Frame = +2
Query: 2 HTYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDL 181
+T I+I++ C V AF + +++ G + D T+++L+ G C++G++ EA+ +FD
Sbjct: 81 YTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK 140
Query: 182 MVAIGHGPDVVSYSIL 229
M+ G P+VV+Y L
Sbjct: 141 MIDEGFQPNVVTYGTL 156
Score = 54.7 bits (130), Expect = 8e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
TYG +I+ CK G A L + M + + D V Y+S++D C ++ EA ++F M
Sbjct: 152 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 211
Query: 185 VAIGHGPDVVSYSIL 229
V G PD+ +Y+ L
Sbjct: 212 VGQGISPDIFTYTSL 226
>ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 89.4 bits (220), Expect = 3e-16
Identities = 40/74 (54%), Positives = 53/74 (71%)
Frame = +2
Query: 8 YGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLMV 187
+ ++DA CK+G V EA E+ MI+RG E D VTY++LMDG+CLQ M EA+ VFD+MV
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 328
Query: 188 AIGHGPDVVSYSIL 229
G PDV+SY+ L
Sbjct: 329 RKGFAPDVISYTTL 342
Score = 64.7 bits (156), Expect = 8e-09
Identities = 33/75 (44%), Positives = 49/75 (65%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
+Y +I+ CK +D+A LF+ M + DT TY++LM G C GR+++AI++F M
Sbjct: 338 SYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEM 397
Query: 185 VAIGHGPDVVSYSIL 229
VA G PD+V+YSIL
Sbjct: 398 VARGQMPDLVTYSIL 412
Score = 55.5 bits (132), Expect = 5e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Frame = +2
Query: 2 HTYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDL 181
+T I+I++ C V AF + +++ G + D T+++L+ G C++G++ EA+ +FD
Sbjct: 92 YTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK 151
Query: 182 MVAIGHGPDVVSYSIL 229
M+ G P+VV+Y L
Sbjct: 152 MIDEGFQPNVVTYGTL 167
Score = 54.7 bits (130), Expect = 8e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
TYG +I+ CK G A L + M + + D V Y+S++D C ++ EA ++F M
Sbjct: 163 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 222
Query: 185 VAIGHGPDVVSYSIL 229
V G PD+ +Y+ L
Sbjct: 223 VGQGISPDIFTYTSL 237
>emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 89.4 bits (220), Expect = 3e-16
Identities = 40/74 (54%), Positives = 53/74 (71%)
Frame = +2
Query: 8 YGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLMV 187
+ ++DA CK+G V EA E+ MI+RG E D VTY++LMDG+CLQ M EA+ VFD+MV
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 337
Query: 188 AIGHGPDVVSYSIL 229
G PDV+SY+ L
Sbjct: 338 RKGFAPDVISYTTL 351
Score = 63.9 bits (154), Expect = 1e-08
Identities = 33/75 (44%), Positives = 49/75 (65%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
+Y +I+ CK +D+A LF+ M + DT TY++LM G C GR+++AI++F M
Sbjct: 347 SYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEM 406
Query: 185 VAIGHGPDVVSYSIL 229
VA G PD+V+YSIL
Sbjct: 407 VARGQMPDLVTYSIL 421
Score = 55.5 bits (132), Expect = 5e-06
Identities = 25/76 (32%), Positives = 47/76 (61%)
Frame = +2
Query: 2 HTYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDL 181
+T I+I++ C V AF + +++ G + D T+++L+ G C++G++ EA+ +FD
Sbjct: 101 YTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK 160
Query: 182 MVAIGHGPDVVSYSIL 229
M+ G P+VV+Y L
Sbjct: 161 MIDEGFQPNVVTYGTL 176
Score = 54.7 bits (130), Expect = 8e-06
Identities = 26/75 (34%), Positives = 41/75 (54%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
TYG +I+ CK G A L + M + + D V Y+S++D C ++ EA ++F M
Sbjct: 172 TYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQM 231
Query: 185 VAIGHGPDVVSYSIL 229
V G PD+ +Y+ L
Sbjct: 232 VGQGISPDIFTYTSL 246
>ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 84.0 bits (206), Expect = 1e-14
Identities = 39/74 (52%), Positives = 52/74 (70%)
Frame = +2
Query: 8 YGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLMV 187
+ ++DA CK+G V EA ++ MI+RG E + VTY++LMDG+CL+ M EA+ VFD MV
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 331
Query: 188 AIGHGPDVVSYSIL 229
G PDVVSYS L
Sbjct: 332 CKGFAPDVVSYSTL 345
Score = 62.0 bits (149), Expect = 5e-08
Identities = 32/75 (42%), Positives = 47/75 (62%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
+Y +I+ CK +++A LF+ M + +TVTYS+LM G C GR+++AI++F M
Sbjct: 341 SYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEM 400
Query: 185 VAIGHGPDVVSYSIL 229
V G PD VSY IL
Sbjct: 401 VTRGQIPDFVSYCIL 415
>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 594
Score = 84.0 bits (206), Expect = 1e-14
Identities = 42/75 (56%), Positives = 51/75 (68%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
T+ I +D CK GMV EA + MIERG + VTY+SLMDGYCL +M EA VFD+M
Sbjct: 386 TFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIM 445
Query: 185 VAIGHGPDVVSYSIL 229
V G PDV+SY+IL
Sbjct: 446 VNKGCAPDVLSYNIL 460
Score = 63.9 bits (154), Expect = 1e-08
Identities = 32/74 (43%), Positives = 48/74 (64%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
T+ I++DA CK+G+V EA +F MI+ E D VTYSSL+ G C KE+ ++ + M
Sbjct: 316 TFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEM 375
Query: 185 VAIGHGPDVVSYSI 226
++ PDVV++SI
Sbjct: 376 LSRNIRPDVVTFSI 389
Score = 61.6 bits (148), Expect = 6e-08
Identities = 33/75 (44%), Positives = 47/75 (62%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
+Y IIID+ CK+ +V+EA +LF M G VTY+SL+ G C G+ K+A +F M
Sbjct: 246 SYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEM 305
Query: 185 VAIGHGPDVVSYSIL 229
+ PDVV++SIL
Sbjct: 306 LEWNMKPDVVTFSIL 320
Score = 60.1 bits (144), Expect = 2e-07
Identities = 31/75 (41%), Positives = 44/75 (58%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
TY +I C G +A LF+ M+E + D VT+S L+D C +G + EA+SVF M
Sbjct: 281 TYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKM 340
Query: 185 VAIGHGPDVVSYSIL 229
+ I PD+V+YS L
Sbjct: 341 IQIAMEPDIVTYSSL 355
Score = 55.1 bits (131), Expect = 6e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Frame = +2
Query: 5 TYGIIIDACCKDGMVDEAFELFQPMIERGDEADTVTYSSLMDGYCLQGRMKEAISVFDLM 184
+Y I+I CK +DEA +LF M +G +++T+++L+ G C GR A +F M
Sbjct: 456 SYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKM 515
Query: 185 VAIGHGPDVVSYSIL 229
+ G PD+++YS L
Sbjct: 516 GSHGCPPDLITYSTL 530