BLASTX nr result
ID: Coptis24_contig00009348
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00009348
(258 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula] 80 2e-13
ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arab... 79 4e-13
gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana] 79 5e-13
ref|NP_172730.3| helicase domain and pentatricopeptide repeat-co... 79 5e-13
ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi... 79 5e-13
>gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 80.1 bits (196), Expect = 2e-13
Identities = 41/84 (48%), Positives = 58/84 (69%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G C+S + A ELL++MI G +P+ FTYSSL+DGL ++G S++AMEL VM
Sbjct: 235 GLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLP 294
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEI 6
N+ Y+++I+G+CKEGK EA EI
Sbjct: 295 NMVTYSTLINGLCKEGKHREAVEI 318
Score = 69.7 bits (169), Expect = 2e-10
Identities = 37/84 (44%), Positives = 52/84 (61%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G CK G++S AKELL +M G P +Y+SLI GL ++ EA+EL M NG +
Sbjct: 200 GLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEP 259
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEI 6
NV Y+S++DG+CK G +A E+
Sbjct: 260 NVFTYSSLMDGLCKSGHSSQAMEL 283
Score = 58.5 bits (140), Expect = 5e-07
Identities = 33/81 (40%), Positives = 44/81 (54%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G CKSG S A ELL+ M+ P+ TYS+LI+GL + G EA+E+ M G K
Sbjct: 270 GLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKP 329
Query: 77 NVPIYNSIIDGMCKEGKLVEA 15
+ +Y II G+C EA
Sbjct: 330 DAGMYGRIISGLCAACNYQEA 350
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = -2
Query: 251 CKSGE-VSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKAN 75
CK+ E V A L ++M G +PD +TY +LI+GL + G ++A EL ME G +
Sbjct: 166 CKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPS 225
Query: 74 VPIYNSIIDGMCKEGKLVEAKEI 6
V Y S+I G+C+ L EA E+
Sbjct: 226 VVSYTSLIHGLCQSNNLDEAIEL 248
>ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata] gi|297338544|gb|EFH68961.1| hypothetical protein
ARALYDRAFT_471420 [Arabidopsis lyrata subsp. lyrata]
Length = 667
Score = 79.0 bits (193), Expect = 4e-13
Identities = 37/77 (48%), Positives = 52/77 (67%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G CKSG+ S+A +LL+ M K D FTYS++ID L R+GC A+ LF+ ME G K+
Sbjct: 179 GICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 238
Query: 77 NVPIYNSIIDGMCKEGK 27
++ YNS++ G+CK GK
Sbjct: 239 SLVTYNSLVGGLCKAGK 255
Score = 77.0 bits (188), Expect = 1e-12
Identities = 34/85 (40%), Positives = 57/85 (67%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
GFC+SG++ +A+EL ++M++ G PD TY L+DGL NG +A+E+F ++ +
Sbjct: 389 GFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNL 448
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
++ +Y II+GMCK GK+ +A +F
Sbjct: 449 DIVMYTIIIEGMCKGGKVEDAWNLF 473
Score = 61.2 bits (147), Expect = 8e-08
Identities = 29/85 (34%), Positives = 54/85 (63%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G C +VS A L+ M+ G +P+ TY+S+++G+ ++G ++ A++L R M+ KA
Sbjct: 144 GLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKA 203
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
+V Y++IID +C++G + A +F
Sbjct: 204 DVFTYSTIIDSLCRDGCIDAAISLF 228
Score = 58.9 bits (141), Expect = 4e-07
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G CK+G+ + +LLKDM + P+ T++ LID + G EA EL++ M G
Sbjct: 249 GLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISP 308
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEI 6
N YNS++DG C + +L EA +
Sbjct: 309 NTITYNSLMDGYCMQNRLSEANNM 332
Score = 58.9 bits (141), Expect = 4e-07
Identities = 38/119 (31%), Positives = 53/119 (44%), Gaps = 35/119 (29%)
Frame = -2
Query: 254 FCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDG----------------LFRNGCSA- 126
F K G++ A EL K+MI G P+ TY+SL+DG + RN CS
Sbjct: 285 FVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPD 344
Query: 125 ------------------EAMELFRVMEHNGTKANVPIYNSIIDGMCKEGKLVEAKEIF 3
E M+LFR + G AN Y+ ++ G C+ GKL A+E+F
Sbjct: 345 IVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELF 403
Score = 55.5 bits (132), Expect = 5e-06
Identities = 28/75 (37%), Positives = 44/75 (58%)
Frame = -2
Query: 254 FCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKAN 75
FC+ + A +L ++ G +PD T+++LI+GL +EA+ L M NG + N
Sbjct: 110 FCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPN 169
Query: 74 VPIYNSIIDGMCKEG 30
V YNSI++G+CK G
Sbjct: 170 VVTYNSIVNGICKSG 184
>gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
Length = 1245
Score = 78.6 bits (192), Expect = 5e-13
Identities = 37/77 (48%), Positives = 52/77 (67%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G C+SG+ S+A +LL+ M K D FTYS++ID L R+GC A+ LF+ ME G K+
Sbjct: 192 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 251
Query: 77 NVPIYNSIIDGMCKEGK 27
+V YNS++ G+CK GK
Sbjct: 252 SVVTYNSLVRGLCKAGK 268
Score = 76.6 bits (187), Expect = 2e-12
Identities = 34/85 (40%), Positives = 57/85 (67%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
GFC+SG++ +A+EL ++M++ G PD TY L+DGL NG +A+E+F ++ +
Sbjct: 402 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 461
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
+ +Y +II+GMCK GK+ +A +F
Sbjct: 462 GIVMYTTIIEGMCKGGKVEDAWNLF 486
Score = 63.5 bits (153), Expect = 2e-08
Identities = 32/85 (37%), Positives = 54/85 (63%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G G+VS A L+ M+ G +PD TY+S+++G+ R+G ++ A++L R ME KA
Sbjct: 157 GLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKA 216
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
+V Y++IID +C++G + A +F
Sbjct: 217 DVFTYSTIIDSLCRDGCIDAAISLF 241
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/84 (34%), Positives = 48/84 (57%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G CK+G+ + LLKDM++ P+ T++ L+D + G EA EL++ M G
Sbjct: 262 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 321
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEI 6
N+ YN+++DG C + +L EA +
Sbjct: 322 NIITYNTLMDGYCMQNRLSEANNM 345
Score = 56.6 bits (135), Expect = 2e-06
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = -2
Query: 254 FCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKAN 75
FC+ + A +L ++ G +PD T+++LI GLF G +EA+ L M NG + +
Sbjct: 123 FCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPD 182
Query: 74 VPIYNSIIDGMCKEG 30
V YNSI++G+C+ G
Sbjct: 183 VVTYNSIVNGICRSG 197
>ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana] gi|332190794|gb|AEE28915.1|
helicase domain and pentatricopeptide repeat-containing
protein [Arabidopsis thaliana]
Length = 735
Score = 78.6 bits (192), Expect = 5e-13
Identities = 37/77 (48%), Positives = 52/77 (67%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G C+SG+ S+A +LL+ M K D FTYS++ID L R+GC A+ LF+ ME G K+
Sbjct: 202 GICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKS 261
Query: 77 NVPIYNSIIDGMCKEGK 27
+V YNS++ G+CK GK
Sbjct: 262 SVVTYNSLVRGLCKAGK 278
Score = 76.6 bits (187), Expect = 2e-12
Identities = 34/85 (40%), Positives = 57/85 (67%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
GFC+SG++ +A+EL ++M++ G PD TY L+DGL NG +A+E+F ++ +
Sbjct: 412 GFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDL 471
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
+ +Y +II+GMCK GK+ +A +F
Sbjct: 472 GIVMYTTIIEGMCKGGKVEDAWNLF 496
Score = 63.5 bits (153), Expect = 2e-08
Identities = 32/85 (37%), Positives = 54/85 (63%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G G+VS A L+ M+ G +PD TY+S+++G+ R+G ++ A++L R ME KA
Sbjct: 167 GLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKA 226
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
+V Y++IID +C++G + A +F
Sbjct: 227 DVFTYSTIIDSLCRDGCIDAAISLF 251
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/84 (34%), Positives = 48/84 (57%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G CK+G+ + LLKDM++ P+ T++ L+D + G EA EL++ M G
Sbjct: 272 GLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISP 331
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEI 6
N+ YN+++DG C + +L EA +
Sbjct: 332 NIITYNTLMDGYCMQNRLSEANNM 355
Score = 56.6 bits (135), Expect = 2e-06
Identities = 28/75 (37%), Positives = 45/75 (60%)
Frame = -2
Query: 254 FCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKAN 75
FC+ + A +L ++ G +PD T+++LI GLF G +EA+ L M NG + +
Sbjct: 133 FCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPD 192
Query: 74 VPIYNSIIDGMCKEG 30
V YNSI++G+C+ G
Sbjct: 193 VVTYNSIVNGICRSG 207
>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product
[Vitis vinifera]
Length = 627
Score = 78.6 bits (192), Expect = 5e-13
Identities = 38/83 (45%), Positives = 54/83 (65%)
Frame = -2
Query: 251 CKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKANV 72
CK+G++ A LLK MI GE PD FTY++LIDG G +A +LF ME G + +
Sbjct: 319 CKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDA 378
Query: 71 PIYNSIIDGMCKEGKLVEAKEIF 3
YN +I+G CK G++VEAK+++
Sbjct: 379 VSYNVLINGYCKSGRMVEAKKLY 401
Score = 65.5 bits (158), Expect = 4e-09
Identities = 33/85 (38%), Positives = 49/85 (57%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G+CKSG + AK+L ++M+ P TY++L+ GLFR G +A LF M+ +
Sbjct: 387 GYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTP 446
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
YN ++DG+CK L EA E+F
Sbjct: 447 ESCTYNILLDGLCKNNHLSEAMELF 471
Score = 64.3 bits (155), Expect = 1e-08
Identities = 32/85 (37%), Positives = 52/85 (61%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G + G+V A L +M P+ TY+ L+DGL +N +EAMELF +E++ +
Sbjct: 422 GLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQP 481
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
++ I+N +IDG+CK K+ A+E+F
Sbjct: 482 SIQIFNCLIDGLCKARKIEIARELF 506
Score = 61.2 bits (147), Expect = 8e-08
Identities = 30/85 (35%), Positives = 48/85 (56%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G C +G AK L +M+ G P+ T++ LID L + G EA L ++M G
Sbjct: 282 GMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESP 341
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
+ YN++IDG C EG++ +A+++F
Sbjct: 342 DTFTYNTLIDGFCLEGRIDDARDLF 366
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/82 (39%), Positives = 41/82 (50%)
Frame = -2
Query: 251 CKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKANV 72
CK G + KEL +M G PD YSS+I G+ G A LF M G NV
Sbjct: 249 CKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNV 308
Query: 71 PIYNSIIDGMCKEGKLVEAKEI 6
+N +ID +CK GK+ EA +
Sbjct: 309 VTFNVLIDALCKAGKMEEANHL 330
Score = 55.5 bits (132), Expect = 5e-06
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELF-RVMEHNG-- 87
G C +S A LL+ M+ G +P+ TY +L++GL G + A++L ++ NG
Sbjct: 171 GLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGF 230
Query: 86 ---TKANVPIYNSIIDGMCKEGKLVEAKEIF 3
K N+ Y +IID +CK+G + + KE+F
Sbjct: 231 GVTIKPNLVCYCTIIDSLCKDGLIDKGKELF 261
Score = 55.5 bits (132), Expect = 5e-06
Identities = 31/85 (36%), Positives = 45/85 (52%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G CK+ +S A EL + +P ++ LIDGL + A ELF + H G +
Sbjct: 457 GLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEP 516
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
NV Y +I G+CK G+L AK++F
Sbjct: 517 NVITYTVMIHGLCKSGQLENAKDLF 541
Score = 54.7 bits (130), Expect = 8e-06
Identities = 28/85 (32%), Positives = 48/85 (56%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
GFC G + A++L M + G + D +Y+ LI+G ++G EA +L+R M
Sbjct: 352 GFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMP 411
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEIF 3
V YN+++ G+ +EGK+ +A +F
Sbjct: 412 TVITYNTLLTGLFREGKVRDAWNLF 436
Score = 54.7 bits (130), Expect = 8e-06
Identities = 25/84 (29%), Positives = 48/84 (57%)
Frame = -2
Query: 257 GFCKSGEVSVAKELLKDMIACGEKPDQFTYSSLIDGLFRNGCSAEAMELFRVMEHNGTKA 78
G CK+ ++ +A+EL + G +P+ TY+ +I GL ++G A +LF ME G
Sbjct: 492 GLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAP 551
Query: 77 NVPIYNSIIDGMCKEGKLVEAKEI 6
N+ +N+++ G C+ ++ + E+
Sbjct: 552 NLVTFNTLMRGFCQNDEMQKVVEL 575