BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009334
         (467 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, pu...   114   6e-24
ref|XP_002276502.1| PREDICTED: splicing factor U2af small subuni...   110   9e-23
ref|XP_004145565.1| PREDICTED: splicing factor U2af small subuni...   110   2e-22
ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|2...   110   2e-22
gb|AAY84879.1| U2AF small subunit [Triticum aestivum]                  89   3e-16

>ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
           communis] gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary
           factor, small subunit, putative [Ricinus communis]
          Length = 272

 Score =  114 bits (286), Expect = 6e-24
 Identities = 73/151 (48%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
 Frame = -1

Query: 467 DQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXNFMHVKEIGRD 288
           DQAAAAL ALQGRFYSGRPII  FS VT+FR+ATCRQF           NFMHVK IGRD
Sbjct: 120 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 179

Query: 287 LRRKLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKRKPR-SLRH 111
           LRRKLF                                            +   R   R 
Sbjct: 180 LRRKLFGRYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRDRDYRGNGRRSGDRHDRRR 239

Query: 110 NGS-----SPVREGSEERRARIEQWNREKDE 33
           +GS     SPVREGSEERRARIEQWNRE++E
Sbjct: 240 HGSPRRSRSPVREGSEERRARIEQWNREREE 270


>ref|XP_002276502.1| PREDICTED: splicing factor U2af small subunit B isoform 1 [Vitis
           vinifera] gi|359491881|ref|XP_003634337.1| PREDICTED:
           splicing factor U2af small subunit B isoform 2 [Vitis
           vinifera]
          Length = 272

 Score =  110 bits (276), Expect = 9e-23
 Identities = 69/151 (45%), Positives = 76/151 (50%), Gaps = 6/151 (3%)
 Frame = -1

Query: 467 DQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXNFMHVKEIGRD 288
           +QAAAAL ALQGRFYSGRPII  FS VT+FR+ATCRQF           NFMHVK IGRD
Sbjct: 120 EQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 179

Query: 287 LRRKLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEK------RKP 126
           LRRKLF                                           +K      R+ 
Sbjct: 180 LRRKLFGRYSGYGRSRSRSRSLSPRYRRDSDRRRSGDRGDYRGNGRRSGDKHGSDGGRRR 239

Query: 125 RSLRHNGSSPVREGSEERRARIEQWNREKDE 33
                   SPVREGSEERRARIE WNRE++E
Sbjct: 240 HGSPRRSRSPVREGSEERRARIELWNREREE 270


>ref|XP_004145565.1| PREDICTED: splicing factor U2af small subunit B-like [Cucumis
           sativus] gi|449485076|ref|XP_004157064.1| PREDICTED:
           splicing factor U2af small subunit B-like [Cucumis
           sativus]
          Length = 276

 Score =  110 bits (274), Expect = 2e-22
 Identities = 69/155 (44%), Positives = 76/155 (49%), Gaps = 10/155 (6%)
 Frame = -1

Query: 467 DQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXNFMHVKEIGRD 288
           DQAAAAL ALQGRFYSGRPII  FS VT+FR+ATCRQ+           NFMHVK IG+D
Sbjct: 120 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENNCNRGGYCNFMHVKMIGKD 179

Query: 287 LRRKLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKR-------- 132
           LRRKLF                                           E+         
Sbjct: 180 LRRKLFGRYRGYRASRSRSRSLSPRNRKEHDRRERDYRDRDYRGNGRSKERHDRDGGRRR 239

Query: 131 --KPRSLRHNGSSPVREGSEERRARIEQWNREKDE 33
              PR  R      VREGSEERRARIEQWNRE++E
Sbjct: 240 QGSPRRSRSRSPVIVREGSEERRARIEQWNREREE 274


>ref|XP_002300614.1| predicted protein [Populus trichocarpa] gi|222842340|gb|EEE79887.1|
           predicted protein [Populus trichocarpa]
          Length = 273

 Score =  110 bits (274), Expect = 2e-22
 Identities = 72/160 (45%), Positives = 79/160 (49%), Gaps = 15/160 (9%)
 Frame = -1

Query: 467 DQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXNFMHVKEIGRD 288
           DQAAAAL ALQGRFYSGRPII  FS VT+FR+ATCRQF           NFMHVK IGRD
Sbjct: 120 DQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGRD 179

Query: 287 LRRKLFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEKRKPRSLRHN 108
           LRRKLF                                           ++ + R  R N
Sbjct: 180 LRRKLF--------GRYRGYRVSRSRSRSVSPRKRERDYDRRERDYRDRDRDRDRDYRGN 231

Query: 107 G---------------SSPVREGSEERRARIEQWNREKDE 33
           G                S VREGSEERRARIEQWNRE++E
Sbjct: 232 GRRNDKYDREGGRKRHGSTVREGSEERRARIEQWNREREE 271


>gb|AAY84879.1| U2AF small subunit [Triticum aestivum]
          Length = 314

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 45/66 (68%), Positives = 50/66 (75%)
 Frame = -1

Query: 467 DQAAAALYALQGRFYSGRPIIVSFSTVTNFRDATCRQFXXXXXXXXXXXNFMHVKEIGRD 288
           DQAA AL ALQGRFYSGRPII  FS VT+FR+ATCRQF           NFMHVKEIGRD
Sbjct: 120 DQAAKALQALQGRFYSGRPIIAEFSPVTDFREATCRQFEEHNCNRGGYCNFMHVKEIGRD 179

Query: 287 LRRKLF 270
           LR++L+
Sbjct: 180 LRKRLY 185