BLASTX nr result

ID: Coptis24_contig00009284 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009284
         (754 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADQ43193.1| unknown [Eutrema parvulum]                             188   1e-45
gb|ACQ90601.1| putative Myb DNA binding protein [Eutrema halophi...   187   2e-45
ref|XP_002329694.1| predicted protein [Populus trichocarpa] gi|2...   183   4e-44
ref|XP_002273214.2| PREDICTED: uncharacterized protein At4g15970...   182   9e-44
ref|NP_172911.1| putative myb DNA binding protein [Arabidopsis t...   181   2e-43

>gb|ADQ43193.1| unknown [Eutrema parvulum]
          Length = 395

 Score =  188 bits (477), Expect = 1e-45
 Identities = 89/147 (60%), Positives = 111/147 (75%)
 Frame = +3

Query: 312 SSNLVDNIGKSRHWTTQYRLEREELGRVLKKASMDDRTIILTTLNKAWAKPGSVFDLFLE 491
           SS++   I  S        LE  +L  VL++A+  D T+ILTTLN+AWA PGSV DLF E
Sbjct: 73  SSSIFSRIFPSFEAFKSLELEEPKLEDVLRRAATRDNTVILTTLNEAWAAPGSVIDLFFE 132

Query: 492 SFRIGEGTSRLLNHLVIVAVDPTAFTRCKSIHPHCFNLTTPGIDFSEDERFMSENYLKLM 671
           SF IGEGTS LLNHLVI+A+D  A++RC+ +H HCF+L T G+DFS +  FM+ +YLK+M
Sbjct: 133 SFGIGEGTSTLLNHLVIIALDDKAYSRCRELHKHCFSLETEGVDFSREAYFMTRSYLKMM 192

Query: 672 WRRIDFLRIVLELGYNFVFTDADIMWF 752
           WRRIDFLR VLE+GYNFVFTDAD+MWF
Sbjct: 193 WRRIDFLRSVLEMGYNFVFTDADVMWF 219


>gb|ACQ90601.1| putative Myb DNA binding protein [Eutrema halophilum]
          Length = 397

 Score =  187 bits (476), Expect = 2e-45
 Identities = 95/172 (55%), Positives = 122/172 (70%), Gaps = 3/172 (1%)
 Frame = +3

Query: 246 FKVSKTFSVFTLVFLACLLFYL---SSNLVDNIGKSRHWTTQYRLEREELGRVLKKASMD 416
           F V+ + S F L   A  L  +   SS+++  I  S        +E  +L  VL++A+  
Sbjct: 49  FLVAISISCFVLYRSAESLHVVPGSSSSIISRIFPSLDSFKSLEIEEPKLEDVLRRAATR 108

Query: 417 DRTIILTTLNKAWAKPGSVFDLFLESFRIGEGTSRLLNHLVIVAVDPTAFTRCKSIHPHC 596
           D T+ILTTLN+AWA PGSV DLF ESF IGEGTS LLNHLVI+A+D  A++RC+ +H HC
Sbjct: 109 DGTVILTTLNEAWAAPGSVIDLFFESFGIGEGTSMLLNHLVIIALDAKAYSRCRELHKHC 168

Query: 597 FNLTTPGIDFSEDERFMSENYLKLMWRRIDFLRIVLELGYNFVFTDADIMWF 752
           F+L T G+DFS +  FM+ +YLK+MWRRIDFLR VLE+GYNFVFTDAD+MWF
Sbjct: 169 FSLETEGVDFSGEAYFMTRSYLKMMWRRIDFLRSVLEMGYNFVFTDADVMWF 220


>ref|XP_002329694.1| predicted protein [Populus trichocarpa] gi|222870602|gb|EEF07733.1|
           predicted protein [Populus trichocarpa]
          Length = 357

 Score =  183 bits (464), Expect = 4e-44
 Identities = 91/166 (54%), Positives = 120/166 (72%), Gaps = 12/166 (7%)
 Frame = +3

Query: 288 LACLLFYLSSNLV------------DNIGKSRHWTTQYRLEREELGRVLKKASMDDRTII 431
           ++CL+ Y S+N              D++    H T + +++ E LGRVL KASM   T+I
Sbjct: 37  VSCLVLYKSANPFEFPPSSLGSSDSDSLSVLYHQTYKRKVDLE-LGRVLNKASMKGNTVI 95

Query: 432 LTTLNKAWAKPGSVFDLFLESFRIGEGTSRLLNHLVIVAVDPTAFTRCKSIHPHCFNLTT 611
           LTTLN AWA+PGS+FDLFLESF+IGE T  LLN+LVI+++D  A  RC +IHPHC+ L T
Sbjct: 96  LTTLNDAWAEPGSIFDLFLESFQIGEKTKELLNNLVIISLDQKAHARCLAIHPHCYALKT 155

Query: 612 PGIDFSEDERFMSENYLKLMWRRIDFLRIVLELGYNFVFTDADIMW 749
            G++F+ +  FMSE+YLK+MWRRI+FL  VLE+GY+FVFTDADIMW
Sbjct: 156 EGLNFTREASFMSEDYLKMMWRRIEFLNTVLEMGYSFVFTDADIMW 201


>ref|XP_002273214.2| PREDICTED: uncharacterized protein At4g15970 [Vitis vinifera]
          Length = 415

 Score =  182 bits (461), Expect = 9e-44
 Identities = 85/127 (66%), Positives = 101/127 (79%)
 Frame = +3

Query: 372 EREELGRVLKKASMDDRTIILTTLNKAWAKPGSVFDLFLESFRIGEGTSRLLNHLVIVAV 551
           E   L RVLK A+M+D T+ILTTLN+AWA P SV DLFLESFRIG+ T R LNHLVI+A+
Sbjct: 115 EELRLERVLKDAAMEDHTVILTTLNEAWAAPDSVIDLFLESFRIGDHTRRYLNHLVIIAL 174

Query: 552 DPTAFTRCKSIHPHCFNLTTPGIDFSEDERFMSENYLKLMWRRIDFLRIVLELGYNFVFT 731
           D  AF RC  +H HCF L T G+DFS +  FM+ +YLK+MWRRIDFLR VLE+GYNF+F+
Sbjct: 175 DQKAFARCLILHNHCFTLVTEGVDFSGEAYFMTSDYLKMMWRRIDFLRSVLEMGYNFIFS 234

Query: 732 DADIMWF 752
           DADIMWF
Sbjct: 235 DADIMWF 241


>ref|NP_172911.1| putative myb DNA binding protein [Arabidopsis thaliana]
           gi|7527728|gb|AAF63177.1|AC010657_13 T5E21.9
           [Arabidopsis thaliana] gi|332191067|gb|AEE29188.1|
           putative myb DNA binding protein [Arabidopsis thaliana]
          Length = 386

 Score =  181 bits (458), Expect = 2e-43
 Identities = 83/127 (65%), Positives = 102/127 (80%)
 Frame = +3

Query: 372 EREELGRVLKKASMDDRTIILTTLNKAWAKPGSVFDLFLESFRIGEGTSRLLNHLVIVAV 551
           E  +L  VL KA+  DRT++LTTLN AWA PGSV DLF ESFRIGE TS++L+HLVIVA+
Sbjct: 81  EEPKLEDVLSKAATRDRTVVLTTLNAAWAAPGSVIDLFFESFRIGEETSQILDHLVIVAL 140

Query: 552 DPTAFTRCKSIHPHCFNLTTPGIDFSEDERFMSENYLKLMWRRIDFLRIVLELGYNFVFT 731
           D  A++RC  +H HCF+L T G+DFS +  FM+ +YLK+MWRRID LR VLE+GYNFVFT
Sbjct: 141 DAKAYSRCLELHKHCFSLVTEGVDFSREAYFMTRSYLKMMWRRIDLLRSVLEMGYNFVFT 200

Query: 732 DADIMWF 752
           DAD+MWF
Sbjct: 201 DADVMWF 207


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