BLASTX nr result
ID: Coptis24_contig00009250
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00009250
(1476 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004145915.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 626 e-177
ref|XP_002273212.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 624 e-176
ref|XP_003631346.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP... 616 e-174
ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putativ... 612 e-172
ref|XP_003620373.1| ATP-dependent RNA helicase [Medicago truncat... 608 e-172
>ref|XP_004145915.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Cucumis
sativus]
Length = 449
Score = 626 bits (1615), Expect = e-177
Identities = 323/422 (76%), Positives = 358/422 (84%)
Frame = -1
Query: 1377 MEEEKEEVKTFKDLGLKEQLVEACESMGWKTPSKIQIEAIPHALQGNDLIGLAQTGSGKT 1198
ME++ EEVKTF+ LG+ EQLVEAC+S+GWK PSKIQ EAIPHAL+G DLIGLAQTGSGKT
Sbjct: 1 MEQDNEEVKTFQSLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGKDLIGLAQTGSGKT 60
Query: 1197 GAFALPILDALLDANQAFFACVLSPTRELAIQISEQFQALGSIIGVKSTVLVGGIDMMQQ 1018
GAFALPIL ALL+A QAFFACVLSPTRELAIQI+EQF+ALGS IG+K VLVGG+DM+QQ
Sbjct: 61 GAFALPILQALLEAPQAFFACVLSPTRELAIQIAEQFEALGSGIGIKCAVLVGGVDMVQQ 120
Query: 1017 SIALAKRPHIVVATPGRLXXXXXXXXXXXXXXXXXXXXL*VNL*APRTPLVPTKHVLDEA 838
+I LAKRPH+VV TPGRL VLDEA
Sbjct: 121 AINLAKRPHVVVGTPGRLVDHLTNTKGFSLRTLKYL-------------------VLDEA 161
Query: 837 DRLLNEEFEESIDNILKAIPRERKTYLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVD 658
DRLLNE+FE+SID IL IPRER+TYLFSATMTKKVRKLQRACLRNPVKIEAA+KYSTVD
Sbjct: 162 DRLLNEDFEKSIDEILNEIPRERRTYLFSATMTKKVRKLQRACLRNPVKIEAATKYSTVD 221
Query: 657 TLKQQYRFVPAKYKDCYLVFILSDIPGSTSMVFTRTCESTRLLALILRNLGFGAIPISGQ 478
TLKQQY F+PAKYK+CYLV+IL+++ GSTSMVFTRTC++TRLL+LILRNLG AIPISGQ
Sbjct: 222 TLKQQYCFIPAKYKECYLVYILTEMSGSTSMVFTRTCDATRLLSLILRNLGLRAIPISGQ 281
Query: 477 MSQAKRLGALNKFKAGECPILICTDVASRGLDIPSVDMVINYDIPANSKDYIHRVGRTAR 298
M+QAKRLGALNKFKAGEC ILICTDVASRGLDIPSVDMVINYDIP+NSKDYIHRVGRTAR
Sbjct: 282 MTQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTAR 341
Query: 297 AGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVLFFSERVAQAKRLALTKVKE 118
AGRSGVAISLVNQYELEWYIQIEKLIGKKLP+F AQEEEVL ERVA+AKR++L K+KE
Sbjct: 342 AGRSGVAISLVNQYELEWYIQIEKLIGKKLPQFSAQEEEVLMLLERVAEAKRISLMKIKE 401
Query: 117 QG 112
G
Sbjct: 402 TG 403
>ref|XP_002273212.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 10-like [Vitis
vinifera]
Length = 470
Score = 624 bits (1610), Expect = e-176
Identities = 324/422 (76%), Positives = 353/422 (83%)
Frame = -1
Query: 1377 MEEEKEEVKTFKDLGLKEQLVEACESMGWKTPSKIQIEAIPHALQGNDLIGLAQTGSGKT 1198
M E+ +EVK+FKDLG+ EQLVEACE++GWKTPSKIQ EAIPHAL+G DLIGLAQTGSGKT
Sbjct: 35 MAEDNKEVKSFKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKT 94
Query: 1197 GAFALPILDALLDANQAFFACVLSPTRELAIQISEQFQALGSIIGVKSTVLVGGIDMMQQ 1018
GAFALPIL ALLD Q FACVLSPTRELAIQI+EQF+ALGS IG+K VLVGG+D QQ
Sbjct: 95 GAFALPILQALLDTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQ 154
Query: 1017 SIALAKRPHIVVATPGRLXXXXXXXXXXXXXXXXXXXXL*VNL*APRTPLVPTKHVLDEA 838
+IALAKRPHIVV TPGRL VLDEA
Sbjct: 155 AIALAKRPHIVVGTPGRLMDHLSNTKGFSLRTMKYL-------------------VLDEA 195
Query: 837 DRLLNEEFEESIDNILKAIPRERKTYLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVD 658
DRLLN++FE++ID IL IPRERKTYLFSATMTKKVRKLQRACLRNPVKIE ASKYSTVD
Sbjct: 196 DRLLNDDFEKAIDEILSVIPRERKTYLFSATMTKKVRKLQRACLRNPVKIEVASKYSTVD 255
Query: 657 TLKQQYRFVPAKYKDCYLVFILSDIPGSTSMVFTRTCESTRLLALILRNLGFGAIPISGQ 478
TLKQQYRFVPAKYK+CYLV+IL+++ GST+MVFTRTC++TRLLAL+LRNLG AIPISG
Sbjct: 256 TLKQQYRFVPAKYKECYLVYILTELSGSTTMVFTRTCDATRLLALLLRNLGLRAIPISGH 315
Query: 477 MSQAKRLGALNKFKAGECPILICTDVASRGLDIPSVDMVINYDIPANSKDYIHRVGRTAR 298
MSQAKRLGALNKFKAGEC ILICTDVASRGLDIPSVDMVINYDIP+NSKDYIHRVGRTAR
Sbjct: 316 MSQAKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTAR 375
Query: 297 AGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVLFFSERVAQAKRLALTKVKE 118
AGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVL ERV +AKR++ KVKE
Sbjct: 376 AGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVLLLLERVTEAKRISQMKVKE 435
Query: 117 QG 112
G
Sbjct: 436 TG 437
>ref|XP_003631346.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
10-like [Vitis vinifera]
Length = 436
Score = 616 bits (1588), Expect = e-174
Identities = 319/422 (75%), Positives = 350/422 (82%)
Frame = -1
Query: 1377 MEEEKEEVKTFKDLGLKEQLVEACESMGWKTPSKIQIEAIPHALQGNDLIGLAQTGSGKT 1198
M E+ +EVK+FKDLG+ EQLVEACE++GWKTPSKIQ EAIPHAL+G DLIGLAQTGSGKT
Sbjct: 1 MAEDNKEVKSFKDLGICEQLVEACENLGWKTPSKIQAEAIPHALEGKDLIGLAQTGSGKT 60
Query: 1197 GAFALPILDALLDANQAFFACVLSPTRELAIQISEQFQALGSIIGVKSTVLVGGIDMMQQ 1018
GAFALPIL ALLD Q FACVLSPTRELAIQI+EQF+ALGS IG+K VLVGG+D QQ
Sbjct: 61 GAFALPILQALLDTPQVLFACVLSPTRELAIQIAEQFEALGSGIGLKCAVLVGGVDHTQQ 120
Query: 1017 SIALAKRPHIVVATPGRLXXXXXXXXXXXXXXXXXXXXL*VNL*APRTPLVPTKHVLDEA 838
+IALAKRPHIVV T G L VLDEA
Sbjct: 121 AIALAKRPHIVVGTLGXLMDHLSNTKGFSLRTMKYL-------------------VLDEA 161
Query: 837 DRLLNEEFEESIDNILKAIPRERKTYLFSATMTKKVRKLQRACLRNPVKIEAASKYSTVD 658
DRLLN++FE++ID IL IP+ERKTYLFSATMTKKVRKLQRACLRNPVKIEA SKYSTVD
Sbjct: 162 DRLLNDDFEKAIDEILSVIPQERKTYLFSATMTKKVRKLQRACLRNPVKIEAGSKYSTVD 221
Query: 657 TLKQQYRFVPAKYKDCYLVFILSDIPGSTSMVFTRTCESTRLLALILRNLGFGAIPISGQ 478
TLKQQYRFVPAKYK+CYLV+IL+++ GST+MVFTRTC++TRLLAL+LRNLG GAIPISG
Sbjct: 222 TLKQQYRFVPAKYKECYLVYILTELSGSTTMVFTRTCDATRLLALLLRNLGLGAIPISGH 281
Query: 477 MSQAKRLGALNKFKAGECPILICTDVASRGLDIPSVDMVINYDIPANSKDYIHRVGRTAR 298
MSQ KRLGALNKFKAGEC ILICTDVASRGLDIPSVDMVINYDIP+NSKDYIHRVGRTA
Sbjct: 282 MSQTKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPSNSKDYIHRVGRTAH 341
Query: 297 AGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVLFFSERVAQAKRLALTKVKE 118
AGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVL ERV +AKR++ K+KE
Sbjct: 342 AGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVLLLLERVTEAKRISQMKIKE 401
Query: 117 QG 112
G
Sbjct: 402 TG 403
>ref|XP_002513373.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223547281|gb|EEF48776.1| dead box ATP-dependent RNA
helicase, putative [Ricinus communis]
Length = 442
Score = 612 bits (1577), Expect = e-172
Identities = 314/427 (73%), Positives = 357/427 (83%), Gaps = 4/427 (0%)
Frame = -1
Query: 1377 MEEEKEEVKTFKDLGLKEQLVEACESMGWKTPSKIQIEAIPHALQGNDLIGLAQTGSGKT 1198
MEEEKEEVKTFK+LG+ +QLV AC+++GWK P+KIQIE+IPHAL+G DLIGLAQTGSGKT
Sbjct: 1 MEEEKEEVKTFKELGVCDQLVTACDNLGWKNPTKIQIESIPHALEGKDLIGLAQTGSGKT 60
Query: 1197 GAFALPILDALLDAN----QAFFACVLSPTRELAIQISEQFQALGSIIGVKSTVLVGGID 1030
GAFALPIL +LL+A+ QAFFACVLSPTRELAIQI+EQF+ALGS IGVK VLVGG+D
Sbjct: 61 GAFALPILQSLLEASEKSVQAFFACVLSPTRELAIQIAEQFEALGSDIGVKCAVLVGGVD 120
Query: 1029 MMQQSIALAKRPHIVVATPGRLXXXXXXXXXXXXXXXXXXXXL*VNL*APRTPLVPTKHV 850
M+QQSIAL KRPHIVVATPGRL V
Sbjct: 121 MVQQSIALGKRPHIVVATPGRLVDHLSNTKGFSLRTLKYL-------------------V 161
Query: 849 LDEADRLLNEEFEESIDNILKAIPRERKTYLFSATMTKKVRKLQRACLRNPVKIEAASKY 670
LDEADRLLNE+FE+S+D ILK IPRER+T+LFSATMTKKV+KLQRACLRNPVKIEAASKY
Sbjct: 162 LDEADRLLNEDFEKSLDEILKVIPRERRTFLFSATMTKKVKKLQRACLRNPVKIEAASKY 221
Query: 669 STVDTLKQQYRFVPAKYKDCYLVFILSDIPGSTSMVFTRTCESTRLLALILRNLGFGAIP 490
STVDTLKQ+YRF+PAKYKDCYLV+IL++ GSTSMVFTRTC++T LAL+LRNLG AIP
Sbjct: 222 STVDTLKQEYRFIPAKYKDCYLVYILTEKSGSTSMVFTRTCDATTFLALVLRNLGLRAIP 281
Query: 489 ISGQMSQAKRLGALNKFKAGECPILICTDVASRGLDIPSVDMVINYDIPANSKDYIHRVG 310
I+G M+Q+KRLGALNKFKAGEC ILICTDVASRGLDIPSVDMVINYDIP NSKDYIHRVG
Sbjct: 282 INGHMTQSKRLGALNKFKAGECNILICTDVASRGLDIPSVDMVINYDIPTNSKDYIHRVG 341
Query: 309 RTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEVLFFSERVAQAKRLALT 130
RTARAGRSGVAISLVNQYE+EW+IQIEKLIGKKLPE+PA+EEEVL E + +AKR++ T
Sbjct: 342 RTARAGRSGVAISLVNQYEVEWFIQIEKLIGKKLPEYPAREEEVLLLLEPITEAKRISQT 401
Query: 129 KVKEQGN 109
+K G+
Sbjct: 402 SIKNSGD 408
>ref|XP_003620373.1| ATP-dependent RNA helicase [Medicago truncatula]
gi|355495388|gb|AES76591.1| ATP-dependent RNA helicase
[Medicago truncatula]
Length = 502
Score = 608 bits (1569), Expect = e-172
Identities = 324/465 (69%), Positives = 365/465 (78%), Gaps = 3/465 (0%)
Frame = -1
Query: 1428 QNLEALKGREEIVLINSMEEEKEEVKTFKDLGLKEQLVEACESMGWKTPSKIQIEAIPHA 1249
QN ++ GRE++ MEEE +E+K+FKDLGL E LVEACE MGWK P KIQIEAIP A
Sbjct: 52 QNRKSQAGREKL----RMEEENKEMKSFKDLGLPESLVEACEKMGWKNPLKIQIEAIPPA 107
Query: 1248 LQGNDLIGLAQTGSGKTGAFALPILDALLDANQA--FFACVLSPTRELAIQISEQFQALG 1075
L+G DLIGLA+TGSGKTGAFALPIL ALL+A + FFACV+SPTRELAIQISEQF+ALG
Sbjct: 108 LEGKDLIGLAETGSGKTGAFALPILHALLEAPRPNHFFACVMSPTRELAIQISEQFEALG 167
Query: 1074 SIIGVKSTVLVGGIDMMQQSIALAKRPHIVVATPGRLXXXXXXXXXXXXXXXXXXXXL*V 895
S IGVK VLVGGIDM+QQS+ +AK PHI+V TPGR+
Sbjct: 168 SEIGVKCAVLVGGIDMVQQSVKIAKLPHIIVGTPGRVLDHLKNTKGFS------------ 215
Query: 894 NL*APRTPLVPTKH-VLDEADRLLNEEFEESIDNILKAIPRERKTYLFSATMTKKVRKLQ 718
L K+ VLDEADRLLNE+FEES++ IL IPRER+T+LFSATMTKKV KLQ
Sbjct: 216 --------LARLKYLVLDEADRLLNEDFEESLNEILGMIPRERRTFLFSATMTKKVEKLQ 267
Query: 717 RACLRNPVKIEAASKYSTVDTLKQQYRFVPAKYKDCYLVFILSDIPGSTSMVFTRTCEST 538
R CLRNPVKIE +SKYSTVDTLKQQYRF+PAK+KDCYLV+IL+++ GSTSMVFTRTC+ST
Sbjct: 268 RVCLRNPVKIETSSKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDST 327
Query: 537 RLLALILRNLGFGAIPISGQMSQAKRLGALNKFKAGECPILICTDVASRGLDIPSVDMVI 358
RLLALILRNLG AIPI+G MSQ KRLGALNKFK+G+C IL+CTDVASRGLDIP+VDMVI
Sbjct: 328 RLLALILRNLGLKAIPINGHMSQPKRLGALNKFKSGDCNILLCTDVASRGLDIPAVDMVI 387
Query: 357 NYDIPANSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEFPAQEEEV 178
NYDIP NSKDYIHRVGRTARAGRSGVAISLVNQYELEWY+QIEKLIGKKLPE+PA EEEV
Sbjct: 388 NYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYVQIEKLIGKKLPEYPANEEEV 447
Query: 177 LFFSERVAQAKRLALTKVKEQGNXXXXXXXXXXXXXDADTYASLK 43
L ERV +AKRLA TK+KE G D D Y LK
Sbjct: 448 LLLEERVGEAKRLAATKMKESGGKKRRGEGDVGEDDDVDKYFGLK 492