BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009239
         (1318 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284709.1| PREDICTED: eukaryotic translation initiation...   234   4e-59
ref|XP_002519577.1| Eukaryotic translation initiation factor 3 s...   231   3e-58
ref|XP_002888479.1| hypothetical protein ARALYDRAFT_475711 [Arab...   228   3e-57
ref|NP_564865.1| Translation initiation factor eIF3 subunit [Ara...   218   2e-54
ref|XP_002305897.1| predicted protein [Populus trichocarpa] gi|2...   217   6e-54

>ref|XP_002284709.1| PREDICTED: eukaryotic translation initiation factor 3 subunit J
            [Vitis vinifera] gi|296088327|emb|CBI36772.3| unnamed
            protein product [Vitis vinifera]
          Length = 222

 Score =  234 bits (597), Expect = 4e-59
 Identities = 122/223 (54%), Positives = 147/223 (65%), Gaps = 1/223 (0%)
 Frame = +2

Query: 359  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSIKKA 538
            M DWEDEP++P+ KK   +  WDDED +DD +KESWED                K  KK 
Sbjct: 1    MEDWEDEPITPLGKKEEPKNKWDDEDLDDDNVKESWEDEDEPAPAPVIQPPAE-KPPKKP 59

Query: 539  GAKSTXXXXXXXXXXXXXXLDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDTFIPK 718
              K+T              LDPVAEK+RQQRL+EEADYKSTTELFA++GDEK+LD+FIPK
Sbjct: 60   VEKATEKKGKAVEAVTEVTLDPVAEKIRQQRLIEEADYKSTTELFAKRGDEKTLDSFIPK 119

Query: 719  SENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIVN-XX 895
            SE+DF+EYAEL++HKLR YEKSFHYI LLKA MRLSM SLK A+AKE+ASS+TAI N   
Sbjct: 120  SESDFVEYAELISHKLRSYEKSFHYIGLLKAVMRLSMASLKAADAKEIASSVTAIANEKL 179

Query: 896  XXXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 1024
                              Q+ VDKPDDD+  + Y+ +DDYDFM
Sbjct: 180  KAEKEANTGKKKIGAKKKQLHVDKPDDDVVVNAYDDIDDYDFM 222


>ref|XP_002519577.1| Eukaryotic translation initiation factor 3 subunit, putative [Ricinus
            communis] gi|223541235|gb|EEF42788.1| Eukaryotic
            translation initiation factor 3 subunit, putative
            [Ricinus communis]
          Length = 222

 Score =  231 bits (589), Expect = 3e-58
 Identities = 123/223 (55%), Positives = 145/223 (65%), Gaps = 1/223 (0%)
 Frame = +2

Query: 359  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSIKKA 538
            M DWEDE + P+  K   ++ WDDED +D+ +KESWED                K+ KK 
Sbjct: 1    MEDWEDEQIPPLILKEQPKSKWDDEDVDDNDVKESWEDEDEPAPEPVAKPPPE-KATKKP 59

Query: 539  GAKSTXXXXXXXXXXXXXX-LDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDTFIP 715
              KS                LDPVAEKLRQQRLVEEADY+STTELF ++GDEK+LD FIP
Sbjct: 60   VTKSIEKKGKTVVAKEESQPLDPVAEKLRQQRLVEEADYRSTTELFGKRGDEKTLDNFIP 119

Query: 716  KSENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIVNXX 895
            KSE+DFLEYAELV+HKLRPYEKSFHYI LLKA MRLSMT++K A+AK+VASS+TAI N  
Sbjct: 120  KSESDFLEYAELVSHKLRPYEKSFHYIGLLKAVMRLSMTAMKAADAKDVASSVTAIANEK 179

Query: 896  XXXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 1024
                              Q+ VDKPD+DL    Y+ALDDYDFM
Sbjct: 180  LKAEKEANAGKKKGGKKKQLHVDKPDEDLVVDSYDALDDYDFM 222


>ref|XP_002888479.1| hypothetical protein ARALYDRAFT_475711 [Arabidopsis lyrata subsp.
            lyrata] gi|297334320|gb|EFH64738.1| hypothetical protein
            ARALYDRAFT_475711 [Arabidopsis lyrata subsp. lyrata]
          Length = 222

 Score =  228 bits (580), Expect = 3e-57
 Identities = 112/222 (50%), Positives = 144/222 (64%)
 Frame = +2

Query: 359  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSIKKA 538
            M DWEDE ++P+P K  +++NWDDED + + IKESWED                K+ KKA
Sbjct: 1    MDDWEDEQIAPLPAKVELKSNWDDEDVDVNEIKESWEDDDEEPAQPPVVKPAPEKAPKKA 60

Query: 539  GAKSTXXXXXXXXXXXXXXLDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDTFIPK 718
              K+               LDP+ EKLRQQRLVEEADY+ST ELF  K +EK+LD FIPK
Sbjct: 61   APKTVEKKGKAIEVPKEEPLDPIVEKLRQQRLVEEADYRSTAELFGVKDEEKNLDMFIPK 120

Query: 719  SENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIVNXXX 898
            SE+DFLEYAE+++H+++PYEKS+HYI LLK  MRLS+T++K A+ K+VASSIT I N   
Sbjct: 121  SESDFLEYAEMISHRIKPYEKSYHYIALLKTIMRLSLTNMKAADVKDVASSITTIANEKL 180

Query: 899  XXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 1024
                             Q++VDKPDDDL A  Y+A+DD+DFM
Sbjct: 181  KAEKEAAAGKKKGGKKKQLIVDKPDDDLVAGPYDAMDDFDFM 222


>ref|NP_564865.1| Translation initiation factor eIF3 subunit [Arabidopsis thaliana]
            gi|334183669|ref|NP_001185326.1| Translation initiation
            factor eIF3 subunit [Arabidopsis thaliana]
            gi|12322607|gb|AAG51301.1|AC026480_8 unknown protein
            [Arabidopsis thaliana] gi|17380828|gb|AAL36101.1| unknown
            protein [Arabidopsis thaliana] gi|20259027|gb|AAM14229.1|
            unknown protein [Arabidopsis thaliana]
            gi|332196337|gb|AEE34458.1| Translation initiation factor
            eIF3 subunit [Arabidopsis thaliana]
            gi|332196338|gb|AEE34459.1| Translation initiation factor
            eIF3 subunit [Arabidopsis thaliana]
          Length = 226

 Score =  218 bits (556), Expect = 2e-54
 Identities = 109/226 (48%), Positives = 145/226 (64%), Gaps = 4/226 (1%)
 Frame = +2

Query: 359  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSIKKA 538
            M DWEDE ++P+P K  +++NWDDED +++ IK+SWED                K+ KKA
Sbjct: 1    MDDWEDEKIAPLPAKVELKSNWDDEDVDENEIKDSWEDDDDEPAQPPVINPAPEKAPKKA 60

Query: 539  GAKSTXXXXXXXXXXXXXX----LDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDT 706
              K+                   LDP+AEKLRQQRLVEEADY++T ELF  K D+K+LD 
Sbjct: 61   APKTVEKKGKAVEVPKEAPKEKPLDPIAEKLRQQRLVEEADYRATAELFGVKDDDKNLDM 120

Query: 707  FIPKSENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIV 886
            FIPKSE+DFLEYAE+++H+++PYEKS+HYI LLK  MRLS+T++K A+ K+VASSIT I 
Sbjct: 121  FIPKSESDFLEYAEMISHRIKPYEKSYHYIALLKTIMRLSLTNMKAADVKDVASSITTIA 180

Query: 887  NXXXXXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 1024
            N                    Q++VDK +DDL A  Y+A+DD+DFM
Sbjct: 181  NEKLKAEKEAAAGKKKGGKKKQLIVDKANDDLVAGPYDAMDDFDFM 226


>ref|XP_002305897.1| predicted protein [Populus trichocarpa] gi|222848861|gb|EEE86408.1|
            predicted protein [Populus trichocarpa]
          Length = 222

 Score =  217 bits (552), Expect = 6e-54
 Identities = 116/223 (52%), Positives = 142/223 (63%), Gaps = 1/223 (0%)
 Frame = +2

Query: 359  MSDWEDEPVSPVPKKALIETNWDDEDAEDDGIKESWEDXXXXXXXXXXXXXXXXKSIKKA 538
            M DWEDE V P+  K   ++ WDDED ++D +KESWED                   KK 
Sbjct: 1    MEDWEDEQVPPLVAKDQPKSKWDDEDVDEDDVKESWEDEDEPDPAPVVKPPPEMAP-KKP 59

Query: 539  GAKSTXXXXXXXXXXXXXXLDPVAEKLRQQRLVEEADYKSTTELFARKGDEKSLDTFIPK 718
              KST              LDP+AEKLRQQRLVEEAD++ST ELF +K DEKSLD+FIPK
Sbjct: 60   AVKSTEKKGNTTDVVKDQPLDPLAEKLRQQRLVEEADFRSTAELFGKKDDEKSLDSFIPK 119

Query: 719  SENDFLEYAELVAHKLRPYEKSFHYINLLKATMRLSMTSLKGAEAKEVASSITAIVN-XX 895
            SE+DFLEYAEL+++KLRP+EKS+HYI+LLKA MRLSMTS+K A+AKEV++S++AI N   
Sbjct: 120  SESDFLEYAELISNKLRPFEKSYHYIHLLKAVMRLSMTSMKAADAKEVSTSVSAIANEKI 179

Query: 896  XXXXXXXXXXXXXXXXXXQVLVDKPDDDLAASGYEALDDYDFM 1024
                              Q+ V KP DDL    Y+ALDDYDFM
Sbjct: 180  KAEKEANTGKKKTGGKKKQLHVGKPGDDLEGDSYDALDDYDFM 222