BLASTX nr result
ID: Coptis24_contig00009235
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis24_contig00009235
(895 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O82797.1|PCNA_TOBAC RecName: Full=Proliferating cell nuclear ... 374 e-124
gb|ADA70357.1| proliferation cell nuclear antigen [Persea americ... 372 e-124
gb|AAG24908.1|AF305075_1 proliferating cell nuclear antigen [Nic... 372 e-123
ref|XP_002281090.1| PREDICTED: proliferating cell nuclear antige... 372 e-123
ref|NP_001234844.1| proliferating cell nuclear antigen [Solanum ... 374 e-123
>sp|O82797.1|PCNA_TOBAC RecName: Full=Proliferating cell nuclear antigen; Short=PCNA
gi|3366661|gb|AAC27992.1| proliferating cell nuclear
antigen [Nicotiana tabacum] gi|3514105|gb|AAC34126.1|
proliferating cell nuclear antigen [Nicotiana tabacum]
gi|4586306|dbj|BAA76349.1| proliferating cell nuclear
antigen [Nicotiana tabacum]
Length = 264
Score = 374 bits (960), Expect(2) = e-124
Identities = 186/208 (89%), Positives = 198/208 (95%)
Frame = +1
Query: 40 MLELRLLQGSLLKKVLESIKDLVTEANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHF 219
MLELRL+QGSLLKKVLESIKDLV +ANFDCSATGFSLQAMDSSHVALVALLLRSEGFEH+
Sbjct: 1 MLELRLVQGSLLKKVLESIKDLVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
Query: 220 RCDRNISMGMKLVNMAMMLKCAGNDDIITIKADDGGDTVTFMFESPNQDKIADFEMKLMN 399
RCDRNISMGM L NMA MLKCAGNDDIIT+KADDG DTVTFMFESP QDKIADFEMKLM+
Sbjct: 61 RCDRNISMGMNLANMAKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
Query: 400 IDSEHLGIPEAEYQAIVRMPSSEFARICKDLSTIGDTVIISVTKEGVKFSTKGDIGTANI 579
IDSEHLGIPEAEY AIVRMPS+EF+RICKDLS+IGDTV+ISVTKEGVKFST+GDIGTANI
Sbjct: 121 IDSEHLGIPEAEYHAIVRMPSAEFSRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANI 180
Query: 580 VCRQNATVDKPEDAIIIEMKEPVSLTFA 663
VCRQN TVDKPE+A +IEM EPVSLTFA
Sbjct: 181 VCRQNTTVDKPEEATVIEMNEPVSLTFA 208
Score = 98.2 bits (243), Expect(2) = e-124
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +2
Query: 743 RYMNSFTKATPLANIVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 895
RY+NSFTKATPL+N VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE
Sbjct: 210 RYLNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 260
>gb|ADA70357.1| proliferation cell nuclear antigen [Persea americana]
Length = 290
Score = 372 bits (955), Expect(2) = e-124
Identities = 185/208 (88%), Positives = 199/208 (95%)
Frame = +1
Query: 40 MLELRLLQGSLLKKVLESIKDLVTEANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHF 219
MLELRL+QGSLLKKVLES+KDLVT+ANFDCSATGFSLQAMDSSHVALVALLLRSEGFEH+
Sbjct: 1 MLELRLVQGSLLKKVLESVKDLVTDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
Query: 220 RCDRNISMGMKLVNMAMMLKCAGNDDIITIKADDGGDTVTFMFESPNQDKIADFEMKLMN 399
RCDRN+SMGM L NM+ MLKCAGNDDIITIKADDG DTVTFMFESP QDKIADFEMKLM+
Sbjct: 61 RCDRNLSMGMNLNNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
Query: 400 IDSEHLGIPEAEYQAIVRMPSSEFARICKDLSTIGDTVIISVTKEGVKFSTKGDIGTANI 579
IDSEHLGIPEAEY AIVRMPS+EFARICKDLS+IGDTV+ISVTKEGVKFST+GDIGTANI
Sbjct: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANI 180
Query: 580 VCRQNATVDKPEDAIIIEMKEPVSLTFA 663
VCRQN +VDKPE++ IIEM EPVSLTFA
Sbjct: 181 VCRQNTSVDKPEESTIIEMNEPVSLTFA 208
Score = 99.0 bits (245), Expect(2) = e-124
Identities = 49/51 (96%), Positives = 50/51 (98%)
Frame = +2
Query: 743 RYMNSFTKATPLANIVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 895
RYMNSFTKATPLAN VTISLSSELPVVVEYKIAEMGYIRFYLAPKIE+DEE
Sbjct: 210 RYMNSFTKATPLANSVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEDDEE 260
>gb|AAG24908.1|AF305075_1 proliferating cell nuclear antigen [Nicotiana benthamiana]
Length = 264
Score = 372 bits (955), Expect(2) = e-123
Identities = 185/208 (88%), Positives = 198/208 (95%)
Frame = +1
Query: 40 MLELRLLQGSLLKKVLESIKDLVTEANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHF 219
MLELRL+QGSLLKKVLESIK+LV +ANFDCSATGFSLQAMDSSHVALVALLLRSEGFEH+
Sbjct: 1 MLELRLVQGSLLKKVLESIKELVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
Query: 220 RCDRNISMGMKLVNMAMMLKCAGNDDIITIKADDGGDTVTFMFESPNQDKIADFEMKLMN 399
RCDRNISMGM L NMA MLKCAGNDDIIT+KADDG DTVTFMFESP QDKIADFEMKLM+
Sbjct: 61 RCDRNISMGMNLGNMAKMLKCAGNDDIITLKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
Query: 400 IDSEHLGIPEAEYQAIVRMPSSEFARICKDLSTIGDTVIISVTKEGVKFSTKGDIGTANI 579
IDSEHLGIPEAEY AIVRMPS+EFARICKDLS+IGDTV+ISVTKEGVKFST+GDIGTAN+
Sbjct: 121 IDSEHLGIPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANV 180
Query: 580 VCRQNATVDKPEDAIIIEMKEPVSLTFA 663
VCRQN TVDKPE+A +IEM EPVSLTFA
Sbjct: 181 VCRQNTTVDKPEEATVIEMNEPVSLTFA 208
Score = 98.2 bits (243), Expect(2) = e-123
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +2
Query: 743 RYMNSFTKATPLANIVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 895
RY+NSFTKATPL+N VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE
Sbjct: 210 RYLNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 260
>ref|XP_002281090.1| PREDICTED: proliferating cell nuclear antigen [Vitis vinifera]
gi|147789518|emb|CAN72062.1| hypothetical protein
VITISV_031803 [Vitis vinifera]
Length = 266
Score = 372 bits (954), Expect(2) = e-123
Identities = 186/208 (89%), Positives = 197/208 (94%)
Frame = +1
Query: 40 MLELRLLQGSLLKKVLESIKDLVTEANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHF 219
MLELRL+QGSLLKKVLE+IKDLV +ANFDCSATGFSLQAMDSSHVALVALLLRSEGFEH+
Sbjct: 1 MLELRLVQGSLLKKVLEAIKDLVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
Query: 220 RCDRNISMGMKLVNMAMMLKCAGNDDIITIKADDGGDTVTFMFESPNQDKIADFEMKLMN 399
RCDRNISMGM L NM+ MLKCAGNDDIITIKADDG DTVTFMFESP QDKIADFEMKLM+
Sbjct: 61 RCDRNISMGMNLNNMSKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
Query: 400 IDSEHLGIPEAEYQAIVRMPSSEFARICKDLSTIGDTVIISVTKEGVKFSTKGDIGTANI 579
IDSEHLGIPEAEY AIVRMPSSEF RICKDLS+IGDTV+ISVTKEGVKFST+GDIGTANI
Sbjct: 121 IDSEHLGIPEAEYHAIVRMPSSEFQRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANI 180
Query: 580 VCRQNATVDKPEDAIIIEMKEPVSLTFA 663
VCRQN TVDKPE+A +IEM EPVSLTFA
Sbjct: 181 VCRQNTTVDKPEEATVIEMNEPVSLTFA 208
Score = 98.2 bits (243), Expect(2) = e-123
Identities = 48/51 (94%), Positives = 50/51 (98%)
Frame = +2
Query: 743 RYMNSFTKATPLANIVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 895
RYMNSFTKATPL+N VTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDE+
Sbjct: 210 RYMNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDED 260
>ref|NP_001234844.1| proliferating cell nuclear antigen [Solanum lycopersicum]
gi|25005275|emb|CAD56690.1| proliferating cell nuclear
antigen [Solanum lycopersicum]
Length = 264
Score = 374 bits (961), Expect(2) = e-123
Identities = 187/208 (89%), Positives = 197/208 (94%)
Frame = +1
Query: 40 MLELRLLQGSLLKKVLESIKDLVTEANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHF 219
MLELRL+QGSLLKKVLESIKDLV +ANFDCSATGFSLQAMDSSHVALVALLLRSEGFEH+
Sbjct: 1 MLELRLVQGSLLKKVLESIKDLVNDANFDCSATGFSLQAMDSSHVALVALLLRSEGFEHY 60
Query: 220 RCDRNISMGMKLVNMAMMLKCAGNDDIITIKADDGGDTVTFMFESPNQDKIADFEMKLMN 399
RCDRNISMGM L NMA MLKCAGNDDIITIKADDG DTVTFMFESP QDKIADFEMKLM+
Sbjct: 61 RCDRNISMGMNLTNMAKMLKCAGNDDIITIKADDGSDTVTFMFESPTQDKIADFEMKLMD 120
Query: 400 IDSEHLGIPEAEYQAIVRMPSSEFARICKDLSTIGDTVIISVTKEGVKFSTKGDIGTANI 579
IDSEHLGIPEAEY AIVRMPS+EF RICKDLS+IGDTV+ISVTKEGVKFST+GDIGTANI
Sbjct: 121 IDSEHLGIPEAEYHAIVRMPSAEFGRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANI 180
Query: 580 VCRQNATVDKPEDAIIIEMKEPVSLTFA 663
VCRQN TVDKPE+A +IEM EPVSLTFA
Sbjct: 181 VCRQNTTVDKPEEATVIEMNEPVSLTFA 208
Score = 95.1 bits (235), Expect(2) = e-123
Identities = 45/51 (88%), Positives = 50/51 (98%)
Frame = +2
Query: 743 RYMNSFTKATPLANIVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEDEE 895
RY+NSFTKA+PL+N VTISLSSELPVVVEYKIAEMGY+R+YLAPKIEEDEE
Sbjct: 210 RYLNSFTKASPLSNTVTISLSSELPVVVEYKIAEMGYVRYYLAPKIEEDEE 260