BLASTX nr result

ID: Coptis24_contig00009228 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009228
         (859 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004144722.1| PREDICTED: zinc finger CCCH domain-containin...    76   1e-11
emb|CBI16011.3| unnamed protein product [Vitis vinifera]               76   1e-11
ref|XP_002280897.1| PREDICTED: zinc finger CCCH domain-containin...    76   1e-11
ref|XP_002314129.1| predicted protein [Populus trichocarpa] gi|2...    74   3e-11
ref|XP_002314127.1| predicted protein [Populus trichocarpa] gi|2...    74   3e-11

>ref|XP_004144722.1| PREDICTED: zinc finger CCCH domain-containing protein 40-like
           [Cucumis sativus] gi|449525922|ref|XP_004169965.1|
           PREDICTED: zinc finger CCCH domain-containing protein
           40-like [Cucumis sativus]
          Length = 517

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
 Frame = -3

Query: 650 ICRSCFGPNMQARLKKGNWDRDCMICKQPFCVVKWLAVCGC-IGETELCHTCSELENVCE 474
           IC SC G N   R+ K ++D++C IC +PF V +W         +TE+C TCS+L+NVC+
Sbjct: 22  ICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQ 81

Query: 473 VCGQVCQKNEHGFLPVRLNETAADIRANIAI 381
           VC       E+G LPV++ +TA  I +N AI
Sbjct: 82  VC---LLDLEYG-LPVQVRDTALSINSNDAI 108


>emb|CBI16011.3| unnamed protein product [Vitis vinifera]
          Length = 349

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
 Frame = -3

Query: 650 ICRSCFGPNMQARLKKGNWDRDCMICKQPFCVVKWLAVCGC-IGETELCHTCSELENVCE 474
           IC SC G N   R+ K ++D++C IC +PF V +W         +TE+C TCS+L+NVC+
Sbjct: 22  ICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQ 81

Query: 473 VCGQVCQKNEHGFLPVRLNETAADIRANIAI 381
           VC       E+G LPV++ +TA  I +N AI
Sbjct: 82  VC---LLDLEYG-LPVQVRDTALSINSNDAI 108


>ref|XP_002280897.1| PREDICTED: zinc finger CCCH domain-containing protein 49-like
           [Vitis vinifera]
          Length = 474

 Score = 75.9 bits (185), Expect = 1e-11
 Identities = 39/91 (42%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
 Frame = -3

Query: 650 ICRSCFGPNMQARLKKGNWDRDCMICKQPFCVVKWLAVCGC-IGETELCHTCSELENVCE 474
           IC SC G N   R+ K ++D++C IC +PF V +W         +TE+C TCS+L+NVC+
Sbjct: 22  ICESCLGDNPYVRMTKADYDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQ 81

Query: 473 VCGQVCQKNEHGFLPVRLNETAADIRANIAI 381
           VC       E+G LPV++ +TA  I +N AI
Sbjct: 82  VC---LLDLEYG-LPVQVRDTALSINSNDAI 108


>ref|XP_002314129.1| predicted protein [Populus trichocarpa] gi|222850537|gb|EEE88084.1|
           predicted protein [Populus trichocarpa]
          Length = 531

 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
 Frame = -3

Query: 650 ICRSCFGPNMQARLKKGNWDRDCMICKQPFCVVKWLAVCGC-IGETELCHTCSELENVCE 474
           IC SC G N   R+ + ++D++C IC +PF V +W         +TE+C TCS+L+NVC+
Sbjct: 22  ICESCLGDNPYVRMTRADFDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQ 81

Query: 473 VCGQVCQKNEHGFLPVRLNETAADIRANIAI 381
           VC       E+G LPV++ +TA  I +N AI
Sbjct: 82  VC---LLDLEYG-LPVQVRDTALSINSNDAI 108


>ref|XP_002314127.1| predicted protein [Populus trichocarpa] gi|222850535|gb|EEE88082.1|
           predicted protein [Populus trichocarpa]
          Length = 531

 Score = 74.3 bits (181), Expect = 3e-11
 Identities = 38/91 (41%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
 Frame = -3

Query: 650 ICRSCFGPNMQARLKKGNWDRDCMICKQPFCVVKWLAVCGC-IGETELCHTCSELENVCE 474
           IC SC G N   R+ + ++D++C IC +PF V +W         +TE+C TCS+L+NVC+
Sbjct: 22  ICESCLGDNPYVRMTRADFDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQ 81

Query: 473 VCGQVCQKNEHGFLPVRLNETAADIRANIAI 381
           VC       E+G LPV++ +TA  I +N AI
Sbjct: 82  VC---LLDLEYG-LPVQVRDTALSINSNDAI 108


Top