BLASTX nr result

ID: Coptis24_contig00009173 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009173
         (798 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAZ09809.1| hypothetical protein OsI_32097 [Oryza sativa Indi...    71   1e-14
gb|ABG73439.1| unknown protein [Oryza brachyantha]                     71   3e-14
ref|NP_001063717.1| Os09g0525200 [Oryza sativa Japonica Group] g...    71   4e-14
ref|XP_002460547.1| hypothetical protein SORBIDRAFT_02g030390 [S...    70   5e-14
ref|XP_002282782.1| PREDICTED: ribosomal RNA processing protein ...    67   6e-14

>gb|EAZ09809.1| hypothetical protein OsI_32097 [Oryza sativa Indica Group]
          Length = 270

 Score = 70.9 bits (172), Expect(2) = 1e-14
 Identities = 36/51 (70%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
 Frame = +1

Query: 166 YYLA-AEIRKRDLMKKFNSLKTAGAGKLEAFIEKKRRKNASKDHRYVPYRR 315
           YYL  +EIR+R LM K+N LK AG  KL+AF+EK+RRKNASKDHRY+PYRR
Sbjct: 217 YYLKKSEIRERKLMNKYNELKEAG--KLDAFMEKRRRKNASKDHRYMPYRR 265



 Score = 35.0 bits (79), Expect(2) = 1e-14
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +3

Query: 12  KHTADKAIVAEHMRSEREAAKEGKHLYHLKQ 104
           K   +  I+ EH++ EREAAK GK  Y+LK+
Sbjct: 191 KKNVESEILREHIKKEREAAKTGKRPYYLKK 221


>gb|ABG73439.1| unknown protein [Oryza brachyantha]
          Length = 281

 Score = 70.9 bits (172), Expect(2) = 3e-14
 Identities = 36/51 (70%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
 Frame = +1

Query: 166 YYLA-AEIRKRDLMKKFNSLKTAGAGKLEAFIEKKRRKNASKDHRYVPYRR 315
           YYL  +EIR+R LM K+N LK AG  KL+AF+EK+RRKNASKDHRY+PYRR
Sbjct: 227 YYLKKSEIRERKLMNKYNELKEAG--KLDAFMEKRRRKNASKDHRYMPYRR 275



 Score = 33.9 bits (76), Expect(2) = 3e-14
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +3

Query: 12  KHTADKAIVAEHMRSEREAAKEGKHLYHLKQ 104
           +   +  I+ EH++ EREAAK GK  Y+LK+
Sbjct: 201 RKNVESEILREHIKKEREAAKTGKQPYYLKK 231


>ref|NP_001063717.1| Os09g0525200 [Oryza sativa Japonica Group]
           gi|52076037|dbj|BAD46490.1| unknown protein [Oryza
           sativa Japonica Group] gi|113631950|dbj|BAF25631.1|
           Os09g0525200 [Oryza sativa Japonica Group]
           gi|215704225|dbj|BAG93065.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|222641940|gb|EEE70072.1| hypothetical protein
           OsJ_30058 [Oryza sativa Japonica Group]
          Length = 270

 Score = 70.9 bits (172), Expect(2) = 4e-14
 Identities = 36/51 (70%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
 Frame = +1

Query: 166 YYLA-AEIRKRDLMKKFNSLKTAGAGKLEAFIEKKRRKNASKDHRYVPYRR 315
           YYL  +EIR+R LM K+N LK AG  KL+AF+EK+RRKNASKDHRY+PYRR
Sbjct: 217 YYLKKSEIRERKLMNKYNELKEAG--KLDAFMEKRRRKNASKDHRYMPYRR 265



 Score = 33.5 bits (75), Expect(2) = 4e-14
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 12  KHTADKAIVAEHMRSEREAAKEGKHLYHLKQ 104
           K   +  I+ EH++ EREA K GK  Y+LK+
Sbjct: 191 KKNVESEILREHIKKEREATKTGKRPYYLKK 221


>ref|XP_002460547.1| hypothetical protein SORBIDRAFT_02g030390 [Sorghum bicolor]
           gi|241923924|gb|EER97068.1| hypothetical protein
           SORBIDRAFT_02g030390 [Sorghum bicolor]
          Length = 274

 Score = 70.1 bits (170), Expect(2) = 5e-14
 Identities = 35/51 (68%), Positives = 43/51 (84%), Gaps = 1/51 (1%)
 Frame = +1

Query: 166 YYLA-AEIRKRDLMKKFNSLKTAGAGKLEAFIEKKRRKNASKDHRYVPYRR 315
           YYL  +E+R+R LM K+N LK AG  KL+AFIE++RRKNASKDHRY+PYRR
Sbjct: 221 YYLKKSELRERKLMNKYNELKEAG--KLDAFIERRRRKNASKDHRYMPYRR 269



 Score = 33.9 bits (76), Expect(2) = 5e-14
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = +3

Query: 24  DKAIVAEHMRSEREAAKEGKHLYHLKQ 104
           +  I+ EH++ EREAAK GK  Y+LK+
Sbjct: 199 ESEILREHIKKEREAAKSGKRPYYLKK 225


>ref|XP_002282782.1| PREDICTED: ribosomal RNA processing protein 36 homolog [Vitis
           vinifera] gi|297742597|emb|CBI34746.3| unnamed protein
           product [Vitis vinifera]
          Length = 236

 Score = 66.6 bits (161), Expect(2) = 6e-14
 Identities = 32/50 (64%), Positives = 42/50 (84%)
 Frame = +1

Query: 166 YYLAAEIRKRDLMKKFNSLKTAGAGKLEAFIEKKRRKNASKDHRYVPYRR 315
           Y   +EIRK+  ++K+NSLK +G  KLE+FIEK+RR+NASKDHRY+PYRR
Sbjct: 184 YIKKSEIRKQRNIEKYNSLKASG--KLESFIEKRRRRNASKDHRYMPYRR 231



 Score = 37.0 bits (84), Expect(2) = 6e-14
 Identities = 17/34 (50%), Positives = 24/34 (70%)
 Frame = +3

Query: 3   GPSKHTADKAIVAEHMRSEREAAKEGKHLYHLKQ 104
           G  KHT D  I+AEH + EREA K+GK  +++K+
Sbjct: 155 GSVKHT-DSKILAEHKKKEREATKQGKRPFYIKK 187


Top