BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009154
         (1373 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    97   5e-25
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    92   4e-24
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...    74   2e-19
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            76   3e-18
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]              84   4e-18

>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 96.7 bits (239), Expect(2) = 5e-25
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 10/277 (3%)
 Frame = -2

Query: 1156 AWAWRSILKSKNEVKEFVLYSIANGESTLLWHDIWC*SIPLL--HNAQAVAELQLPLYAK 983
            +W WR +LK ++    F  Y I NG+    WHD W    PL+     +   ++ + ++A 
Sbjct: 146  SWMWRKLLKYRHLASGFTQYEIRNGKGVSFWHDNWSPLGPLIAISGTRGCIDMGIDIHAT 205

Query: 982  VSHLILNGRGIT*WAIYSEITSGKP**ALPSILICWRIVIWVPHPSGHFSPSSAYKAL-- 809
            V+  + + R        +++ +         ++    +V+W     G F PS + K    
Sbjct: 206  VAEALTHRRRRHRADHLNQMEAQLEELRTKGLVETEDVVLW-KGKGGRFKPSFSTKETWA 264

Query: 808  --SPARPKIRWQRLVWGK**SQDILLLVGNCFSNSLPMQDRLVQKKIITHSSCCLCDQSR 635
                 +P+  W + +W    +     +      N L   DR++      + SC  C +  
Sbjct: 265  DTREQKPRNEWYQGIWFSHATPKYSFITWLATKNRLSTGDRMMSWNAGVNLSCVFCQEQT 324

Query: 634  EYSNHLFFECVYSREIIDGIKAFLGFLSDTRSSNREWFSLLKLCKRKAQIGE----VYKA 467
            E  NHLFF C YSRE+  G+ + L     TR  + +W ++LKL   K  +G     + + 
Sbjct: 325  ETRNHLFFTCRYSREVWSGLTSKL----LTRHYSTDWTTILKLLTDKT-LGNNRLFLLRY 379

Query: 466  FICATVDAIWKERNAKRFNSNSKPAAVVLGRIIRDMR 356
                 V +IWKERN++R      P+A++L R+ +++R
Sbjct: 380  AFQILVYSIWKERNSRRHGEEPLPSALLLKRLDKEVR 416



 Score = 45.4 bits (106), Expect(2) = 5e-25
 Identities = 22/66 (33%), Positives = 39/66 (59%)
 Frame = -1

Query: 1373 LKRCHHQASFSTICKTKEEGGLGIMNMGLWNKGTYCGLVYRIAAKEESVWVDWVWRNLIQ 1194
            L R   + S++ +C  KEEGGLG+ ++   NK     L++R+ +   S+WV W+ + +I+
Sbjct: 73   LNRKKAKVSWNDVCMPKEEGGLGLRSLTEANKVCCLKLIWRLLS-SSSLWVQWLRQYVIR 131

Query: 1193 NKYFWT 1176
               FW+
Sbjct: 132  KGSFWS 137


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
            predicted protein [Populus trichocarpa]
          Length = 517

 Score = 92.4 bits (228), Expect(2) = 4e-24
 Identities = 83/290 (28%), Positives = 132/290 (45%), Gaps = 6/290 (2%)
 Frame = -2

Query: 1177 LEVPSDCAWAWRSILKSKNEVKEFVLYSIANGESTLLWHDIWC*SIPLL--HNAQAVAEL 1004
            ++ P +C+WAW  ILK ++     + Y I +G +T LW D W    PL   +  + + + 
Sbjct: 207  IKTPQNCSWAWGKILKLRSLAWPKMKYIIGDGMTTSLWFDNWHPHSPLADSYGERFIYDS 266

Query: 1003 QLPLYAKVSHLILNG--RGIT*WAI-YSEITSGKP**ALPSILICWRIVIWVPHPSGHFS 833
             +   AKV+ LI N   +  T  AI +  I    P  + P +     +V W+  P+  FS
Sbjct: 267  GMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELV-WLDSPNHRFS 325

Query: 832  PSSAYKALSPARPKIRWQRLVWGK**SQDILLLVGNCFSNSLPMQDRLVQKKIITHSSCC 653
               A++ L   R  + W  +VW K        L+       L  QD+L +  I   + C 
Sbjct: 326  VKVAWEQLRRHRQMVEWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCS 385

Query: 652  LCDQSREYSNHLFFECVYSREIIDGIKAFLGFLSDTRSSNREWFSLLKLC-KRKAQIGEV 476
            LC ++ E  NHLFFEC Y++ I   +         T+  + EW     +    K+ +   
Sbjct: 386  LCLRNNEDHNHLFFECSYTKAIWWDVCDRCDIPRMTKGWD-EWIRWATVSWHGKSFVNFS 444

Query: 475  YKAFICATVDAIWKERNAKRFNSNSKPAAVVLGRIIRDMRAYLQIQINVI 326
             K    ATV  +W+ERNA+ F   S+   +VL +I   +R  L +  NV+
Sbjct: 445  CKLSFAATVYHVWQERNARIFAGMSRTPNLVLNQIECIIRDKLDLMRNVV 494



 Score = 46.6 bits (109), Expect(2) = 4e-24
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
 Frame = -1

Query: 1355 QASFSTICKTKEEGGLGIMNMGLWNKGTYCGLVYRIAAKEE-SVWVDWVWRNLIQNKYFW 1179
            + ++  +C  K+EGGLGI ++  WNK      ++ +    + S+W  W+  NL++ + FW
Sbjct: 146  KVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFW 205

Query: 1178 T 1176
            T
Sbjct: 206  T 206


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana] gi|93007380|gb|ABE97193.1| hypothetical protein
            At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score = 74.3 bits (181), Expect(2) = 2e-19
 Identities = 66/270 (24%), Positives = 120/270 (44%), Gaps = 17/270 (6%)
 Frame = -2

Query: 1174 EVPSDCAWAWRSILKSKNEVKEFVLYSIANGESTLLWHDIWC*SIPLLHN---AQAVAEL 1004
            E  S  +W W+ +LK +++ K F    + NGEST  W+D W  S+  L++    +   ++
Sbjct: 80   ETSSRGSWIWKKLLKYRDKAKCFHKVDVRNGESTSFWYDSWS-SLGCLYDKFGERGCIDM 138

Query: 1003 QLPLYAKVSHLILNGRGIT*W-----AIYSEITSGKP**ALPSILICWR-IVIWVPHPSG 842
             +P  + +S  I+  R          A+ +EI   K      S ++  R + +W     G
Sbjct: 139  GIPKDSTLSSAIMTTRRRKHRQPLLNAVETEIQKQK-----QSRIVTERDVALWKGKEDG 193

Query: 841  H---FSPSSAYKALSPARPKIRWQRLVWGK**SQDILLLVGNCFSNSLPMQDRLVQKKII 671
                F     +  +   +P+++  R +W    +    LL      N +   +++      
Sbjct: 194  FHPTFLSKETWSQIRNTQPEMQGYRGIWFSNATPKYALLTWLMVRNRIATGEKMGLWNQN 253

Query: 670  THSSCCLCDQSREYSNHLFFECVYSREIIDGIKAFLGFLSDTRSSNREWFSLLKLCKRKA 491
            T +SC  C    E   HLFF+CVY+R++ +G+    G L D  S    W  ++ +  RK 
Sbjct: 254  TDTSCIFCKNPNETREHLFFQCVYTRKVWNGL--IKGLLLDKYSD--RWQDIILMLTRKD 309

Query: 490  QIGEVYKAFICA-----TVDAIWKERNAKR 416
               +  K+FI       ++ +IW+ER+ +R
Sbjct: 310  --FDTTKSFILGYVLQNSIHSIWRERDDRR 337



 Score = 49.3 bits (116), Expect(2) = 2e-19
 Identities = 21/59 (35%), Positives = 36/59 (61%)
 Frame = -1

Query: 1355 QASFSTICKTKEEGGLGIMNMGLWNKGTYCGLVYRIAAKEESVWVDWVWRNLIQNKYFW 1179
            + ++S +C  K EGGLG+  +   NK     L++RI + + S+WVDWV ++L++    W
Sbjct: 18   KVAWSVVCTPKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDWVKKHLLRGGSLW 76


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 75.9 bits (185), Expect(2) = 3e-18
 Identities = 72/279 (25%), Positives = 113/279 (40%), Gaps = 13/279 (4%)
 Frame = -2

Query: 1153 WAWRSILKSKNEVKEFVLYSIANGESTLLWHDIWC*SIPLLHNAQAVAE--LQLPLYAKV 980
            W W+ +L  +   ++F+   + NG +   W D W    PL+     V    L++P  AKV
Sbjct: 780  WTWKMLLNLRPLAEKFIKAKVGNGGTVSFWFDCWTSLGPLIKYLGDVGSRPLRIPFSAKV 839

Query: 979  SHLILNG-------RGIT*WAIYSEITSGKP**ALPSILICWRIVIWVPHPSG--HFSPS 827
            +  I          R +T  +I S + S  P    PS L+      W         FS +
Sbjct: 840  ADAIDGSGWRLPLSRSLTADSILSHLASLPP----PSPLMVSDSYSWCVDDVDCQGFSAA 895

Query: 826  SAYKALSPARPKIRWQRLVWGK**SQDILLLVGNCFSNSLPMQDRLVQKKIITHSSCCLC 647
              ++ L P RP  RW R VW K               N LP + RLV   +++ + CCLC
Sbjct: 896  KTWEVLRPRRPVKRWARSVWFKGAVPKHAFNFWTAQLNRLPTRQRLVSWGLVSSAECCLC 955

Query: 646  DQSREYSNHLFFECVYSREIIDGIKAFLGFLSDTRSSNREWFSLLKLCKRK--AQIGEVY 473
                E  +HL   C +S ++   +  FL  L   +     W  LL   ++   A    + 
Sbjct: 956  SFDTETRDHLLLLCDFSSQVWRMV--FLR-LCPRQRLLCTWAELLSWTRQSTAAAPSLLR 1012

Query: 472  KAFICATVDAIWKERNAKRFNSNSKPAAVVLGRIIRDMR 356
            K      V  +W++RN    +S     +VV   + R++R
Sbjct: 1013 KVVAQLVVYNLWRQRNLVLHSSLRVSCSVVFRLVDRELR 1051



 Score = 43.5 bits (101), Expect(2) = 3e-18
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 1355 QASFSTICKTKEEGGLGIMNMGLWNKGTYCGLVYRIAAKEESVWVDWVWRNLIQNKYFW 1179
            + S+   C  K EGGLG  + G WNK     L++ +  ++ S+W  W   + + +  FW
Sbjct: 712  KVSWVDCCLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFW 770


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score = 84.0 bits (206), Expect(2) = 4e-18
 Identities = 74/336 (22%), Positives = 132/336 (39%), Gaps = 9/336 (2%)
 Frame = -2

Query: 1177 LEVPSDCAWAWRSILKSKNEVKEFVLYSIANGESTLLWHDIWC*SIPLLHNAQAVAELQL 998
            L+  S+C+W WRSI+K K+ +   + +++ NG     W+D W    PL  N   + +  +
Sbjct: 902  LQSQSNCSWGWRSIMKGKDVLAGAIKWNVGNGRKINFWNDWWVGDGPLASNTDCINQPHM 961

Query: 997  PLYAKVSHLILNGRGIT*WAIYSEITSGKP**ALPSILICWRIVI---------WVPHPS 845
                KV  LI + R     A+++ + +      +  ++    I I         W    +
Sbjct: 962  -TDIKVEDLITSQRRWDTGALHNILPTN-----MIDMVRATPIAINSEQEDFLSWPHSTT 1015

Query: 844  GHFSPSSAYKALSPARPKIRWQRLVWGK**SQDILLLVGNCFSNSLPMQDRLVQKKIITH 665
            G  + SSAY  ++      R    +W    ++ I L +     N L +     ++ +   
Sbjct: 1016 GMVTVSSAYSLIAGHDGDDRSHDWIWRATCTEKIKLFMWKIVKNGLMVNVERKRRGLADA 1075

Query: 664  SSCCLCDQSREYSNHLFFECVYSREIIDGIKAFLGFLSDTRSSNREWFSLLKLCKRKAQI 485
            +SC +C +  E  +HLF  C+ +    D     L F +        W       ++K   
Sbjct: 1076 ASCPVCGEEDETLDHLFRRCLLAEACWDSAVPPLTFQTSNHLHMHSWMKAACSSQQKDGY 1135

Query: 484  GEVYKAFICATVDAIWKERNAKRFNSNSKPAAVVLGRIIRDMRAYLQIQINVIQDTPES* 305
            G  +       +  +WK RN   F++N    + +L R             + ++ +    
Sbjct: 1136 GTNWSLIFPYILWNLWKARNRLVFDNNITAPSDILNR-------------SFMESSEARC 1182

Query: 304  VLC*TLGIQVQFKTIERKWCQWYPPLDPRVKLNIDG 197
            +L    G+Q  F+T    W  W PP     KLN DG
Sbjct: 1183 LLAKRTGLQTAFQT----WVVWSPPAAGFTKLNSDG 1214



 Score = 35.0 bits (79), Expect(2) = 4e-18
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = -1

Query: 1358 HQASFSTICKTKEEGGLGIMNMGLWNKGTYCGLVYRIAAKEESVWVDWVWRNLIQNKYF 1182
            H  +++ ICK + EGGLG+     +N+     + ++I +  + +WV  +    ++N  F
Sbjct: 841  HSVNWAEICKPRNEGGLGLRMARDFNRAFLTKMAWQIFSNIDKLWVKVLREKYVKNADF 899