BLASTX nr result

ID: Coptis24_contig00009101 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009101
         (313 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312032.1| predicted protein [Populus trichocarpa] gi|2...   142   4e-32
ref|XP_002529715.1| conserved hypothetical protein [Ricinus comm...   139   2e-31
emb|CBI31497.3| unnamed protein product [Vitis vinifera]              132   3e-29
ref|XP_002274888.1| PREDICTED: nucleolar complex protein 2 homol...   132   3e-29
emb|CAN66646.1| hypothetical protein VITISV_018784 [Vitis vinifera]   130   1e-28

>ref|XP_002312032.1| predicted protein [Populus trichocarpa] gi|222851852|gb|EEE89399.1|
           predicted protein [Populus trichocarpa]
          Length = 624

 Score =  142 bits (357), Expect = 4e-32
 Identities = 67/100 (67%), Positives = 81/100 (81%)
 Frame = -1

Query: 313 FSQWGFHISFPEVATIPLIRLRQFQEKVTAESLRRPVKRFIDQVQQNIEFVEKKRDEAAF 134
           F+QW +HISFP++ATIPLI LR+F E  T ESLRR VKRFIDQV+QNIEFV KKRDE  F
Sbjct: 487 FAQWSYHISFPDLATIPLIYLRKFYETTTIESLRRVVKRFIDQVEQNIEFVRKKRDEVTF 546

Query: 133 SPKDLESVESFVQLKACGGNAPFVQYYESVVRKSLNQGAL 14
           SP D +SVESF+QL+ CGGNAPF +YY SV+ K+ ++  L
Sbjct: 547 SPNDQQSVESFLQLEKCGGNAPFTKYYTSVIEKAGSRNLL 586


>ref|XP_002529715.1| conserved hypothetical protein [Ricinus communis]
           gi|223530817|gb|EEF32681.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 561

 Score =  139 bits (350), Expect = 2e-31
 Identities = 65/94 (69%), Positives = 75/94 (79%)
 Frame = -1

Query: 313 FSQWGFHISFPEVATIPLIRLRQFQEKVTAESLRRPVKRFIDQVQQNIEFVEKKRDEAAF 134
           F+QW +HISFPE+ATIPLIRLR F E  T ES RR VKRFIDQV+ NIEFV KKRDE AF
Sbjct: 427 FAQWSYHISFPELATIPLIRLRNFHEITTTESFRRVVKRFIDQVEHNIEFVRKKRDEVAF 486

Query: 133 SPKDLESVESFVQLKACGGNAPFVQYYESVVRKS 32
           SP+D +SVESF+Q + C GN PF QYY S++ KS
Sbjct: 487 SPRDQQSVESFLQQEMCSGNLPFTQYYRSLIEKS 520


>emb|CBI31497.3| unnamed protein product [Vitis vinifera]
          Length = 710

 Score =  132 bits (332), Expect = 3e-29
 Identities = 65/101 (64%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
 Frame = -1

Query: 313 FSQWGFHISFPEVATIPLIRLRQFQEKVTAESLRRPVKRFIDQVQQNIEFVEKKRDEAAF 134
           F QW +HISFPE+A+IPLIRLR+F E +T E+LR  VKR IDQV+QN+EFV+KKRDE AF
Sbjct: 578 FGQWSYHISFPELASIPLIRLRKFHE-ITIENLRHVVKRLIDQVEQNVEFVQKKRDEVAF 636

Query: 133 SPKDLESVESFVQL-KACGGNAPFVQYYESVVRKSLNQGAL 14
           SP D +SVESF+QL K  GGNAPF QYY S++ K+ ++  L
Sbjct: 637 SPNDQQSVESFLQLEKGGGGNAPFTQYYNSIMEKAASRSLL 677


>ref|XP_002274888.1| PREDICTED: nucleolar complex protein 2 homolog [Vitis vinifera]
          Length = 704

 Score =  132 bits (332), Expect = 3e-29
 Identities = 65/101 (64%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
 Frame = -1

Query: 313 FSQWGFHISFPEVATIPLIRLRQFQEKVTAESLRRPVKRFIDQVQQNIEFVEKKRDEAAF 134
           F QW +HISFPE+A+IPLIRLR+F E +T E+LR  VKR IDQV+QN+EFV+KKRDE AF
Sbjct: 578 FGQWSYHISFPELASIPLIRLRKFHE-ITIENLRHVVKRLIDQVEQNVEFVQKKRDEVAF 636

Query: 133 SPKDLESVESFVQL-KACGGNAPFVQYYESVVRKSLNQGAL 14
           SP D +SVESF+QL K  GGNAPF QYY S++ K+ ++  L
Sbjct: 637 SPNDQQSVESFLQLEKGGGGNAPFTQYYNSIMEKAASRSLL 677


>emb|CAN66646.1| hypothetical protein VITISV_018784 [Vitis vinifera]
          Length = 700

 Score =  130 bits (327), Expect = 1e-28
 Identities = 64/101 (63%), Positives = 80/101 (79%), Gaps = 1/101 (0%)
 Frame = -1

Query: 313 FSQWGFHISFPEVATIPLIRLRQFQEKVTAESLRRPVKRFIDQVQQNIEFVEKKRDEAAF 134
           F QW +HISFPE+A+IPLIRLR+F E +T E+LR  VKR IDQV+QN+EFV+KKRDE AF
Sbjct: 559 FGQWSYHISFPELASIPLIRLRKFHE-ITIENLRHVVKRLIDQVEQNVEFVQKKRDEVAF 617

Query: 133 SPKDLESVESFVQL-KACGGNAPFVQYYESVVRKSLNQGAL 14
           SP D +SVESF+QL K  GGN PF QYY S++ K+ ++  L
Sbjct: 618 SPNDQQSVESFLQLEKGGGGNXPFTQYYNSIMEKAASRSLL 658


Top