BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009045
         (488 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFW85570.1| 60S ribosomal protein L39, partial [Zea mays]          115   3e-24
emb|CBI25619.3| unnamed protein product [Vitis vinifera]              112   2e-23
emb|CBI25617.3| unnamed protein product [Vitis vinifera]              112   2e-23
ref|XP_002523523.1| ribosomal protein L39e, putative [Ricinus co...   112   2e-23
ref|XP_002869300.1| 60S ribosomal protein L39 [Arabidopsis lyrat...   111   5e-23

>gb|AFW85570.1| 60S ribosomal protein L39, partial [Zea mays]
          Length = 99

 Score =  115 bits (289), Expect = 3e-24
 Identities = 54/79 (68%), Positives = 64/79 (81%), Gaps = 4/79 (5%)
 Frame = -3

Query: 483 LQIRVCSLSQNPLPPPR----TAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTD 316
           +++ +  +  +P PPP     ++P A  MPSHK+F IKKKLAKKMRQNRPIP+WIRMRTD
Sbjct: 21  IRVSISPIRVSPPPPPPPPLPSSPPAEAMPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTD 80

Query: 315 NTIRYNAKRRHWRRTKLGF 259
           NTIRYNAKRRHWRRTKLGF
Sbjct: 81  NTIRYNAKRRHWRRTKLGF 99


>emb|CBI25619.3| unnamed protein product [Vitis vinifera]
          Length = 72

 Score =  112 bits (281), Expect = 2e-23
 Identities = 52/59 (88%), Positives = 54/59 (91%)
 Frame = -3

Query: 435 RTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 259
           R A +   MPSHK+FMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 14  RRARKISKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 72


>emb|CBI25617.3| unnamed protein product [Vitis vinifera]
          Length = 70

 Score =  112 bits (281), Expect = 2e-23
 Identities = 52/59 (88%), Positives = 54/59 (91%)
 Frame = -3

Query: 435 RTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 259
           R A +   MPSHK+FMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 12  RRARKISKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 70


>ref|XP_002523523.1| ribosomal protein L39e, putative [Ricinus communis]
           gi|223537230|gb|EEF38862.1| ribosomal protein L39e,
           putative [Ricinus communis]
          Length = 67

 Score =  112 bits (281), Expect = 2e-23
 Identities = 52/60 (86%), Positives = 54/60 (90%)
 Frame = -3

Query: 438 PRTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 259
           P  A Q   MPSHK+F+IKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 8   PLEALQVAKMPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 67


>ref|XP_002869300.1| 60S ribosomal protein L39 [Arabidopsis lyrata subsp. lyrata]
           gi|297821901|ref|XP_002878833.1| 60S ribosomal protein
           L39 [Arabidopsis lyrata subsp. lyrata]
           gi|297315136|gb|EFH45559.1| 60S ribosomal protein L39
           [Arabidopsis lyrata subsp. lyrata]
           gi|297324672|gb|EFH55092.1| 60S ribosomal protein L39
           [Arabidopsis lyrata subsp. lyrata]
          Length = 51

 Score =  111 bits (278), Expect = 5e-23
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = -3

Query: 411 MPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 259
           MPSHKSFMIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51