BLASTX nr result

ID: Coptis24_contig00009010 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009010
         (566 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281176.1| PREDICTED: uncharacterized protein LOC100249...   106   2e-21
gb|ABK94391.1| unknown [Populus trichocarpa]                          106   3e-21
ref|XP_003523745.1| PREDICTED: uncharacterized protein LOC100820...    98   1e-18
ref|XP_003526495.1| PREDICTED: uncharacterized protein LOC100796...    97   1e-18
ref|XP_003603622.1| hypothetical protein MTR_3g109720 [Medicago ...    92   4e-17

>ref|XP_002281176.1| PREDICTED: uncharacterized protein LOC100249040 [Vitis vinifera]
           gi|296081836|emb|CBI20841.3| unnamed protein product
           [Vitis vinifera]
          Length = 90

 Score =  106 bits (265), Expect = 2e-21
 Identities = 59/92 (64%), Positives = 71/92 (77%), Gaps = 2/92 (2%)
 Frame = -2

Query: 556 MASRYRSISKPAFNFLKSSLNKPKLTKPISPPPQPTRSSLPTFPRLPSELGCVQSLLPLH 377
           MASRYRS+SKP  + LKS++ K KL+ P   P   T  + PT PR  S++ C+QSLLPLH
Sbjct: 1   MASRYRSLSKPTLSLLKSTITKTKLSNPT--PLLCTPGASPTLPRSFSQIRCLQSLLPLH 58

Query: 376 SAISSARLTSCLGI--SNSRSLSQELGLSVPR 287
           +A+SSARLTSCLGI  S+SRSLSQELGLSVPR
Sbjct: 59  TAVSSARLTSCLGIDSSSSRSLSQELGLSVPR 90


>gb|ABK94391.1| unknown [Populus trichocarpa]
          Length = 91

 Score =  106 bits (264), Expect = 3e-21
 Identities = 60/92 (65%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
 Frame = -2

Query: 556 MASRYRSISKPAFNFLKSSLNKPKLTKPISPPPQPTRSSLPTFPRLPSELGCVQSLLPLH 377
           MASRYRS+SKP F+ LKS+ NKP L    +P   P R SL TF R   +LG +QSLLP H
Sbjct: 1   MASRYRSLSKPTFSLLKSTTNKPTLQPKSTPSLLPARPSL-TFSRPVPQLGAIQSLLPFH 59

Query: 376 SAISSARLTSCLGIS--NSRSLSQELGLSVPR 287
           SA+SSARLTSCL I   +SRSLSQELGLSVPR
Sbjct: 60  SAVSSARLTSCLSIDSRSSRSLSQELGLSVPR 91


>ref|XP_003523745.1| PREDICTED: uncharacterized protein LOC100820535 [Glycine max]
          Length = 91

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 57/92 (61%), Positives = 68/92 (73%), Gaps = 2/92 (2%)
 Frame = -2

Query: 556 MASRYRSISKPAFNFLKSSLNKPKLTKPISPPPQPTRSSLPTFPRLPSELGCVQSLLPLH 377
           MASRYRS+S+PAF+ +KS++ KP      S     TRS + T   +  ELGC+QSLLPLH
Sbjct: 1   MASRYRSVSQPAFSIIKSTITKPSSKLLPSSFLLKTRSPV-TARWVGGELGCLQSLLPLH 59

Query: 376 SAISSARLTSCLGI--SNSRSLSQELGLSVPR 287
           SA+SSARLTSCLGI  S SRSLSQE+GLS PR
Sbjct: 60  SAVSSARLTSCLGIDSSRSRSLSQEMGLSTPR 91


>ref|XP_003526495.1| PREDICTED: uncharacterized protein LOC100796764 [Glycine max]
          Length = 93

 Score = 97.4 bits (241), Expect = 1e-18
 Identities = 58/94 (61%), Positives = 71/94 (75%), Gaps = 4/94 (4%)
 Frame = -2

Query: 556 MASRYRSISKPAFNFLKSSLNKPKLTKPI-SPPPQPTRSSLPTFP-RLPSELGCVQSLLP 383
           MASRYRS+S+PAF+ +KS++ KP  +KP+ S     TRS +     R   +LGC+QSLLP
Sbjct: 1   MASRYRSVSQPAFSLIKSTITKPA-SKPVPSSFLLKTRSPVTARQVRFGGKLGCLQSLLP 59

Query: 382 LHSAISSARLTSCLGI--SNSRSLSQELGLSVPR 287
           LHSA+SSARLTSCLGI  S SRSLSQE+GLS PR
Sbjct: 60  LHSAVSSARLTSCLGIDSSRSRSLSQEMGLSTPR 93


>ref|XP_003603622.1| hypothetical protein MTR_3g109720 [Medicago truncatula]
           gi|355492670|gb|AES73873.1| hypothetical protein
           MTR_3g109720 [Medicago truncatula]
          Length = 93

 Score = 92.4 bits (228), Expect = 4e-17
 Identities = 54/85 (63%), Positives = 66/85 (77%), Gaps = 3/85 (3%)
 Frame = -2

Query: 556 MASRYRSISKPAFNFLKSSLNKPKLTKP-ISPPPQPTRSSLPTFPRLPSELGCVQSLLPL 380
           MASRYRS S+PAF+ +KS++NKPK +    SP    TR+S+    R  +ELGCVQSLLPL
Sbjct: 1   MASRYRSFSQPAFSLIKSTINKPKSSSSSFSPFLLKTRTSVTV--RSVAELGCVQSLLPL 58

Query: 379 HSAISSARLTSCLGI--SNSRSLSQ 311
           HSA+SSARLTSCLGI  ++SRSLSQ
Sbjct: 59  HSAVSSARLTSCLGIDSTSSRSLSQ 83


Top