BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00009003
         (967 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, ch...   326   6e-87
ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Popu...   319   7e-85
gb|ACD56611.1| putative photosystem II protein [Gossypioides kir...   318   1e-84
ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast p...   316   6e-84
gb|AFK43146.1| unknown [Lotus japonicus]                              313   4e-83

>ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic [Vitis
           vinifera] gi|302141814|emb|CBI19017.3| unnamed protein
           product [Vitis vinifera]
          Length = 270

 Score =  326 bits (835), Expect = 6e-87
 Identities = 178/274 (64%), Positives = 199/274 (72%), Gaps = 3/274 (1%)
 Frame = +1

Query: 79  MAQTMMLMSSVAGHG-LDLKRAPLIHRLKPKPFSHFFLTPXXXXXXXXXXXXXXXIALFX 255
           MAQTM++  SV+GH  LDLKR PL+ RL+PKPFSH  L P               +ALF 
Sbjct: 1   MAQTMLITPSVSGHSVLDLKRQPLLQRLRPKPFSHLLLPPLPTSSSTSSPAFTT-LALFK 59

Query: 256 XXXXXXXXXXXXXXXXEPKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGI 435
                           +PKP+VED            K+NELFVGRVAM+GFAASLLGE I
Sbjct: 60  SKTKAAPSKKVT----KPKPQVEDGIFGTSGGIGFTKKNELFVGRVAMLGFAASLLGEAI 115

Query: 436 TGKGILAQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDD--ATGLEKAVIP 609
           TGKGILAQLN+ETGIPIYEAEP           GAIGALGDRGRFVDD   TG+E AVIP
Sbjct: 116 TGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDDPPTGIEGAVIP 175

Query: 610 TGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 789
            GK  RSALGLREGGP+FGFTK+NELFVGRLAQLG  FS+IGEIITGKGALAQLNIETGV
Sbjct: 176 PGKGLRSALGLREGGPLFGFTKSNELFVGRLAQLGIVFSIIGEIITGKGALAQLNIETGV 235

Query: 790 PINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 891
           PI+++EPLVLFNV+FFF AALNPG+GKFVTD+EE
Sbjct: 236 PISDIEPLVLFNVIFFFFAALNPGSGKFVTDDEE 269


>ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa]
           gi|118488707|gb|ABK96164.1| unknown [Populus
           trichocarpa] gi|222842713|gb|EEE80260.1| hypothetical
           protein POPTRDRAFT_816277 [Populus trichocarpa]
          Length = 272

 Score =  319 bits (817), Expect = 7e-85
 Identities = 180/277 (64%), Positives = 197/277 (71%), Gaps = 6/277 (2%)
 Frame = +1

Query: 79  MAQTMMLMSSVAGHG-LDLKRAPL----IHRLKPKPFSHFFLTPXXXXXXXXXXXXXXXI 243
           MAQTM+LMS V+    +DLKR PL    + RL+P PFS     P               +
Sbjct: 1   MAQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRPAPFSRLLYNP--LPSKASSSNAFTTL 58

Query: 244 ALFXXXXXXXXXXXXXXXXXEPKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLL 423
           ALF                  PKPKVED            KQNELFVGRVAMIGFAASLL
Sbjct: 59  ALF----KPRTKAVPKKAAPPPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLL 114

Query: 424 GEGITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDD-ATGLEKA 600
           GE ITGKGIL+QLN+ETGIPIYEAEP           GAIGALGDRGRFVDD  TG+E A
Sbjct: 115 GEAITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDPTTGIEGA 174

Query: 601 VIPTGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 780
           VIP GKSFR+ALGL+EGGP+FGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLNIE
Sbjct: 175 VIPPGKSFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE 234

Query: 781 TGVPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 891
           TG+P+NE+EPLVLFNVLFFFIAALNPG GKFVTDE+E
Sbjct: 235 TGIPVNEIEPLVLFNVLFFFIAALNPGTGKFVTDEDE 271


>gb|ACD56611.1| putative photosystem II protein [Gossypioides kirkii]
          Length = 277

 Score =  318 bits (815), Expect = 1e-84
 Identities = 180/280 (64%), Positives = 196/280 (70%), Gaps = 9/280 (3%)
 Frame = +1

Query: 79  MAQTMMLMSSV---AGHGLDLKRA-PLIH----RLKPKPFSHFFLTPXXXXXXXXXXXXX 234
           MAQTM++MSS    A H ++LKR  PL+H     LKPKPFSHF   P             
Sbjct: 1   MAQTMLVMSSTSVSASHVVNLKRDHPLLHFQAQGLKPKPFSHFLFNPLSNAVAASSSKAF 60

Query: 235 XXIALFXXXXXXXXXXXXXXXXXEPKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAA 414
              ALF                 +PKPKVED            KQNELFVGRVAMIGFAA
Sbjct: 61  TTFALFKSKTKAAPKKAEP----KPKPKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAA 116

Query: 415 SLLGEGITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDA-TGL 591
           SLLGE ITGKGILAQLN+ETGIPIYEAEP           GAIGALGDRGRFVD+  TG+
Sbjct: 117 SLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPPTGV 176

Query: 592 EKAVIPTGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQL 771
           E AVIP GK  R ALGL+EGGP+FGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQL
Sbjct: 177 EGAVIPPGKGVRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQL 236

Query: 772 NIETGVPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 891
           NIETG+PI+++EPLVLFNV FFF AA+NPG GKFVTDEEE
Sbjct: 237 NIETGIPISDIEPLVLFNVAFFFAAAINPGTGKFVTDEEE 276


>ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast precursor, putative
           [Ricinus communis] gi|223546847|gb|EEF48344.1|
           Photosystem II 22 kDa protein, chloroplast precursor,
           putative [Ricinus communis]
          Length = 275

 Score =  316 bits (809), Expect = 6e-84
 Identities = 176/278 (63%), Positives = 197/278 (70%), Gaps = 7/278 (2%)
 Frame = +1

Query: 79  MAQTMMLMSSVAG-HGLDLKRAPLIH----RLKPKPFSHFFLTPXXXXXXXXXXXXXXX- 240
           MAQTM+ MS V+  H +DLKR PL+     RL+PKPFS    +P                
Sbjct: 1   MAQTMLFMSGVSTRHVVDLKRDPLLQFQVDRLRPKPFSSLLFSPLPTNSSSFAPSKTFTT 60

Query: 241 IALFXXXXXXXXXXXXXXXXXEPKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASL 420
            ALF                 +PK KVED            KQNELFVGRVAM+GFAASL
Sbjct: 61  FALFKSKAKAAPKKTVV----KPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMLGFAASL 116

Query: 421 LGEGITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDA-TGLEK 597
           LGEG+TGKGILAQLN+ETGIPIYEAEP           GAIGALGDRG+FVDD  TG+E 
Sbjct: 117 LGEGLTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPTGIEG 176

Query: 598 AVIPTGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 777
           AVIP GK FR+ALGL+EGGP+FGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLNI
Sbjct: 177 AVIPPGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNI 236

Query: 778 ETGVPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 891
           ETG+P+NE+EPLVLFNV+FFF AALNPG GKFVTDEE+
Sbjct: 237 ETGIPVNEIEPLVLFNVIFFFFAALNPGTGKFVTDEED 274


>gb|AFK43146.1| unknown [Lotus japonicus]
          Length = 273

 Score =  313 bits (802), Expect = 4e-83
 Identities = 177/278 (63%), Positives = 196/278 (70%), Gaps = 7/278 (2%)
 Frame = +1

Query: 79  MAQTMMLMSSVAG-HGLDLKRAPLIH----RLKPKPFSHFFLTPXXXXXXXXXXXXXXXI 243
           MAQTM+LMSSV+  + +DLK+ PL+H    RL+PK FS     P               +
Sbjct: 1   MAQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPK-FSQLSFNPLPSNSSLFSSRTFTTL 59

Query: 244 ALFXXXXXXXXXXXXXXXXXEPKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLL 423
           ALF                 + KPKVED            KQNELFVGRVAMIGFAASLL
Sbjct: 60  ALFKSKAKAPPPKVV-----KQKPKVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASLL 114

Query: 424 GEGITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGRFVDDA--TGLEK 597
           GE +TGKGILAQLN+ETGIPIYEAEP           GAIGALGDRG+FVDD   TGL+K
Sbjct: 115 GEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDESPTGLDK 174

Query: 598 AVIPTGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 777
           AVIP GK  R ALGL EGGP+FGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNI
Sbjct: 175 AVIPPGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNI 234

Query: 778 ETGVPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 891
           ETG+PINE+EPLVLFNV FFFIAALNPG GKFV+D+ E
Sbjct: 235 ETGIPINEIEPLVLFNVAFFFIAALNPGTGKFVSDDGE 272