BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008456
         (429 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI39303.3| unnamed protein product [Vitis vinifera]              162   3e-38
ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containi...   162   3e-38
ref|XP_002521822.1| pentatricopeptide repeat-containing protein,...   138   5e-31
ref|NP_001172752.1| Os01g0959600 [Oryza sativa Japonica Group] g...   127   9e-28
gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indi...   127   9e-28

>emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  162 bits (410), Expect = 3e-38
 Identities = 84/142 (59%), Positives = 96/142 (67%)
 Frame = +2

Query: 2   GKQIHAQILKSNLQSDEFIGSALFDLYSLSGCIEGGLRCFHSTPKLDIVSWTSLMAGCVR 181
           GKQIHAQI K NLQSDEFIG+AL +LYSLSG IE GL+CFHSTPKLD+VSWTSL+ G V+
Sbjct: 269 GKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQ 328

Query: 182 NSQXXXXXXXXXXXXVSGRKLD*FTIXXXXXXXXXXXXXXXGEQIQGHAVKTGLGCFVIV 361
           N Q             SGRK D FTI               GEQI  +A+KTG+G F I+
Sbjct: 329 NGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTII 388

Query: 362 GTSLICMYAKSGDIDAANLTFK 427
             S ICMYAK GDID+AN+TFK
Sbjct: 389 QNSQICMYAKCGDIDSANMTFK 410



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 47/144 (32%), Positives = 65/144 (45%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   GKQIHAQILKSNLQSDEFIGSALFDLYSLSGCIEGGLRCFHSTPKLDIVSWTSLMAGCVR 181
           G+ IHA I  S L     + ++L D+Y   G I+     F S  +LD VSW SL+AG VR
Sbjct: 60  GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 119

Query: 182 NSQXXXXXXXXXXXXVSGRKLD*FTI--XXXXXXXXXXXXXXXGEQIQGHAVKTGLGCFV 355
                            G  L+ + +                 G+ + G AVK GL   V
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 356 IVGTSLICMYAKSGDIDAANLTFK 427
           +VGT+L+  YAK GD++ A   FK
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFK 203


>ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  162 bits (410), Expect = 3e-38
 Identities = 84/142 (59%), Positives = 96/142 (67%)
 Frame = +2

Query: 2   GKQIHAQILKSNLQSDEFIGSALFDLYSLSGCIEGGLRCFHSTPKLDIVSWTSLMAGCVR 181
           GKQIHAQI K NLQSDEFIG+AL +LYSLSG IE GL+CFHSTPKLD+VSWTSL+ G V+
Sbjct: 348 GKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQ 407

Query: 182 NSQXXXXXXXXXXXXVSGRKLD*FTIXXXXXXXXXXXXXXXGEQIQGHAVKTGLGCFVIV 361
           N Q             SGRK D FTI               GEQI  +A+KTG+G F I+
Sbjct: 408 NGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTII 467

Query: 362 GTSLICMYAKSGDIDAANLTFK 427
             S ICMYAK GDID+AN+TFK
Sbjct: 468 QNSQICMYAKCGDIDSANMTFK 489



 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 47/144 (32%), Positives = 65/144 (45%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   GKQIHAQILKSNLQSDEFIGSALFDLYSLSGCIEGGLRCFHSTPKLDIVSWTSLMAGCVR 181
           G+ IHA I  S L     + ++L D+Y   G I+     F S  +LD VSW SL+AG VR
Sbjct: 139 GRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVR 198

Query: 182 NSQXXXXXXXXXXXXVSGRKLD*FTI--XXXXXXXXXXXXXXXGEQIQGHAVKTGLGCFV 355
                            G  L+ + +                 G+ + G AVK GL   V
Sbjct: 199 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 258

Query: 356 IVGTSLICMYAKSGDIDAANLTFK 427
           +VGT+L+  YAK GD++ A   FK
Sbjct: 259 VVGTALLDTYAKIGDLEDATKIFK 282



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 40/142 (28%), Positives = 60/142 (42%)
 Frame = +2

Query: 2   GKQIHAQILKSNLQSDEFIGSALFDLYSLSGCIEGGLRCFHSTPKLDIVSWTSLMAGCVR 181
           GK  H  ++K+  +   F+ + L  +Y   G  +   + F   PK ++VSW SL++G  +
Sbjct: 38  GKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQ 97

Query: 182 NSQXXXXXXXXXXXXVSGRKLD*FTIXXXXXXXXXXXXXXXGEQIQGHAVKTGLGCFVIV 361
                          +S  +LD FT                G  I      +GLG  V++
Sbjct: 98  MGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLL 157

Query: 362 GTSLICMYAKSGDIDAANLTFK 427
             SLI MY K G ID A L F+
Sbjct: 158 TNSLIDMYCKCGRIDWARLVFE 179


>ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539035|gb|EEF40632.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 793

 Score =  138 bits (347), Expect = 5e-31
 Identities = 72/142 (50%), Positives = 89/142 (62%)
 Frame = +2

Query: 2   GKQIHAQILKSNLQSDEFIGSALFDLYSLSGCIEGGLRCFHSTPKLDIVSWTSLMAGCVR 181
           GKQIHA I K N+QSDEFIGS L +LYSL G  E  L+CF+STPKLDIVSWT+++AG  +
Sbjct: 338 GKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQ 397

Query: 182 NSQXXXXXXXXXXXXVSGRKLD*FTIXXXXXXXXXXXXXXXGEQIQGHAVKTGLGCFVIV 361
           N Q             SG+K D F I               GEQ+ G+AVKTG+G   IV
Sbjct: 398 NGQFESALALFYELLASGKKPDEFIITTMLSACADVAAERSGEQVHGYAVKTGIGTLAIV 457

Query: 362 GTSLICMYAKSGDIDAANLTFK 427
             S I MYAKSG++D+A +TF+
Sbjct: 458 QNSQISMYAKSGNLDSAKITFE 479



 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 2/144 (1%)
 Frame = +2

Query: 2   GKQIHAQILKSNLQSDEFIGSALFDLYSLSGCIEGGLRCFHSTPKLDIVSWTSLMAGCVR 181
           GK IH   +   L    F+ + L D+Y     I+     F S+ +LD VSW SL+ G  R
Sbjct: 129 GKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYAR 188

Query: 182 NSQXXXXXXXXXXXXVSGRKLD*FTI--XXXXXXXXXXXXXXXGEQIQGHAVKTGLGCFV 355
                           +G +L+ FT+                 G+ + G+ VK GL   +
Sbjct: 189 VGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDI 248

Query: 356 IVGTSLICMYAKSGDIDAANLTFK 427
           +VGT+L+ MYAK+G +  A   F+
Sbjct: 249 VVGTALLDMYAKTGYLGDAIQLFR 272


>ref|NP_001172752.1| Os01g0959600 [Oryza sativa Japonica Group]
           gi|255674093|dbj|BAH91482.1| Os01g0959600 [Oryza sativa
           Japonica Group]
          Length = 542

 Score =  127 bits (319), Expect = 9e-28
 Identities = 65/142 (45%), Positives = 84/142 (59%)
 Frame = +2

Query: 2   GKQIHAQILKSNLQSDEFIGSALFDLYSLSGCIEGGLRCFHSTPKLDIVSWTSLMAGCVR 181
           GKQIH Q++K   Q D+FIGSAL DLY  SGC+E G RCF S+PK DIV+WT++++GCV+
Sbjct: 338 GKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQ 397

Query: 182 NSQXXXXXXXXXXXXVSGRKLD*FTIXXXXXXXXXXXXXXXGEQIQGHAVKTGLGCFVIV 361
           N               +G K D FTI               GEQIQ  A K+G   F ++
Sbjct: 398 NELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVM 457

Query: 362 GTSLICMYAKSGDIDAANLTFK 427
           G S + MYA+SGD+DAA   F+
Sbjct: 458 GNSCVHMYARSGDVDAATRRFQ 479


>gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  127 bits (319), Expect = 9e-28
 Identities = 65/142 (45%), Positives = 84/142 (59%)
 Frame = +2

Query: 2   GKQIHAQILKSNLQSDEFIGSALFDLYSLSGCIEGGLRCFHSTPKLDIVSWTSLMAGCVR 181
           GKQIH Q++K   Q D+FIGSAL DLY  SGC+E G RCF S+PK DIV+WT++++GCV+
Sbjct: 338 GKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQ 397

Query: 182 NSQXXXXXXXXXXXXVSGRKLD*FTIXXXXXXXXXXXXXXXGEQIQGHAVKTGLGCFVIV 361
           N               +G K D FTI               GEQIQ  A K+G   F ++
Sbjct: 398 NELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGEQIQCFATKSGFDRFTVM 457

Query: 362 GTSLICMYAKSGDIDAANLTFK 427
           G S + MYA+SGD+DAA   F+
Sbjct: 458 GNSCVHMYARSGDVDAATRRFQ 479