BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis24_contig00008244
         (809 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002318458.1| predicted protein [Populus trichocarpa] gi|2...   142   7e-32
ref|XP_002519893.1| arginine/serine-rich splicing factor, putati...   140   4e-31
dbj|BAC79849.1| putative pre-mRNA splicing factor SF2 [Oryza sat...   139   6e-31
gb|EEE67802.1| hypothetical protein OsJ_25544 [Oryza sativa Japo...   139   6e-31
dbj|BAG97617.1| unnamed protein product [Oryza sativa Japonica G...   139   6e-31

>ref|XP_002318458.1| predicted protein [Populus trichocarpa] gi|222859131|gb|EEE96678.1|
           predicted protein [Populus trichocarpa]
          Length = 280

 Score =  142 bits (359), Expect = 7e-32
 Identities = 68/90 (75%), Positives = 79/90 (87%), Gaps = 4/90 (4%)
 Frame = +3

Query: 9   GGGG----SRHSEFRVVVRGLPSSASWQDLKDYMRKAGDVTYAQVYRKGDGAIGHVDYTN 176
           GGGG    SRHSEFRV+VRGLPSSASWQDLKD+MRKAGDV +A+V R GDG +G VDYTN
Sbjct: 111 GGGGRLGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDGDGTLGLVDYTN 170

Query: 177 YEDMKYAIRKLDDTEFKNPFSKGYIRVEAF 266
           +EDMKYAIRKLDDTEFKNP+++ YIRV+ +
Sbjct: 171 HEDMKYAIRKLDDTEFKNPWARAYIRVKQY 200


>ref|XP_002519893.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
           gi|223540939|gb|EEF42497.1| arginine/serine-rich
           splicing factor, putative [Ricinus communis]
          Length = 264

 Score =  140 bits (352), Expect = 4e-31
 Identities = 68/96 (70%), Positives = 78/96 (81%), Gaps = 9/96 (9%)
 Frame = +3

Query: 6   SGGGGS---------RHSEFRVVVRGLPSSASWQDLKDYMRKAGDVTYAQVYRKGDGAIG 158
           SGGGGS         RHSEFRV+VRGLPSSASWQDLKD+MRKAGDV +A+V R  DG  G
Sbjct: 98  SGGGGSGSGGRYCISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSDGTFG 157

Query: 159 HVDYTNYEDMKYAIRKLDDTEFKNPFSKGYIRVEAF 266
            VDYTNYEDMKYAIRKLDDTEF+NP+++ YIRV+ +
Sbjct: 158 IVDYTNYEDMKYAIRKLDDTEFRNPWARAYIRVKMY 193


>dbj|BAC79849.1| putative pre-mRNA splicing factor SF2 [Oryza sativa Japonica Group]
          Length = 362

 Score =  139 bits (351), Expect = 6e-31
 Identities = 67/92 (72%), Positives = 78/92 (84%), Gaps = 5/92 (5%)
 Frame = +3

Query: 6   SGGGG-----SRHSEFRVVVRGLPSSASWQDLKDYMRKAGDVTYAQVYRKGDGAIGHVDY 170
           SGGGG     SRH+E+RV+V GLPSSASWQDLKD+MR AGDV Y++VYR+G G IG VDY
Sbjct: 159 SGGGGRRGGVSRHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDY 218

Query: 171 TNYEDMKYAIRKLDDTEFKNPFSKGYIRVEAF 266
           TNY+DMKYAIRKLDD+EFKN FSK YIRV+ +
Sbjct: 219 TNYDDMKYAIRKLDDSEFKNAFSKAYIRVKEY 250


>gb|EEE67802.1| hypothetical protein OsJ_25544 [Oryza sativa Japonica Group]
          Length = 338

 Score =  139 bits (351), Expect = 6e-31
 Identities = 67/92 (72%), Positives = 78/92 (84%), Gaps = 5/92 (5%)
 Frame = +3

Query: 6   SGGGG-----SRHSEFRVVVRGLPSSASWQDLKDYMRKAGDVTYAQVYRKGDGAIGHVDY 170
           SGGGG     SRH+E+RV+V GLPSSASWQDLKD+MR AGDV Y++VYR+G G IG VDY
Sbjct: 159 SGGGGRRGGVSRHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDY 218

Query: 171 TNYEDMKYAIRKLDDTEFKNPFSKGYIRVEAF 266
           TNY+DMKYAIRKLDD+EFKN FSK YIRV+ +
Sbjct: 219 TNYDDMKYAIRKLDDSEFKNAFSKAYIRVKEY 250


>dbj|BAG97617.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 247

 Score =  139 bits (351), Expect = 6e-31
 Identities = 67/92 (72%), Positives = 78/92 (84%), Gaps = 5/92 (5%)
 Frame = +3

Query: 6   SGGGG-----SRHSEFRVVVRGLPSSASWQDLKDYMRKAGDVTYAQVYRKGDGAIGHVDY 170
           SGGGG     SRH+E+RV+V GLPSSASWQDLKD+MR AGDV Y++VYR+G G IG VDY
Sbjct: 93  SGGGGRRGGVSRHTEYRVLVTGLPSSASWQDLKDHMRNAGDVCYSEVYREGGGTIGIVDY 152

Query: 171 TNYEDMKYAIRKLDDTEFKNPFSKGYIRVEAF 266
           TNY+DMKYAIRKLDD+EFKN FSK YIRV+ +
Sbjct: 153 TNYDDMKYAIRKLDDSEFKNAFSKAYIRVKEY 184